prot_Ecto-sp13_S_contig6593.17435.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6593.17435.1
Unique Nameprot_Ecto-sp13_S_contig6593.17435.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length161
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6593.17435.1 vs. uniprot
Match: D8LFE0_ECTSI (DNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFE0_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 7.380e-22
Identity = 83/106 (78.30%), Postives = 89/106 (83.96%), Query Frame = 0 
Query:    1 MQKSITSFFGGPKDGAVDPPSPPKPRXXXXXXXXXXXXXXXXXXXXXXATKKS--RRVVDGDGEDEATPAPHSPAGTSNAEDKGDGENLTPEKNTAVASGKRKQSA 104
            MQKSITSFFGGPKDGA DPPSPPK  XXXXXXXXXXXXXXXXXXXXXX TK    RRVVDG       PA  SPAGTSNAE+KG+GE+L+PEKNTAVA+GKRKQ+A
Sbjct:    1 MQKSITSFFGGPKDGAADPPSPPKXXXXXXXXXXXXXXXXXXXXXXXXXTKXXXXRRVVDGXXXXXXKPASPSPAGTSNAEEKGNGESLSPEKNTAVAAGKRKQAA 106
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6593.17435.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFE0_ECTSI7.380e-2278.30DNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8L... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6593contigEcto-sp13_S_contig6593:6127..7515 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6593.17435.1mRNA_Ecto-sp13_S_contig6593.17435.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6593 6005..7515 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6593.17435.1 ID=prot_Ecto-sp13_S_contig6593.17435.1|Name=mRNA_Ecto-sp13_S_contig6593.17435.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=161bp
MQKSITSFFGGPKDGAVDPPSPPKPRPPSAKPSPKAKPKAAKKAAKPAAT
KKSRRVVDGDGEDEATPAPHSPAGTSNAEDKGDGENLTPEKNTAVASGKR
KQSAGEAGGGEEEEETAAAAAPRAGKAGDDELEGGEDASAQKKPRRLRRL
AEKKANAAAED
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