mRNA_Ecto-sp13_S_contig6593.17435.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6593.17435.1
Unique NamemRNA_Ecto-sp13_S_contig6593.17435.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6593.17435.1 vs. uniprot
Match: D8LFE0_ECTSI (DNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFE0_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 4.970e-21
Identity = 83/106 (78.30%), Postives = 89/106 (83.96%), Query Frame = 3 
Query:  123 MQKSITSFFGGPKDGAVDPPSPPKPRXXXXXXXXXXXXXXXXXXXXXXATKKS--RRVVDGDGEDEATPAPHSPAGTSNAEDKGDGENLTPEKNTAVASGKRKQSA 434
            MQKSITSFFGGPKDGA DPPSPPK  XXXXXXXXXXXXXXXXXXXXXX TK    RRVVDG       PA  SPAGTSNAE+KG+GE+L+PEKNTAVA+GKRKQ+A
Sbjct:    1 MQKSITSFFGGPKDGAADPPSPPKXXXXXXXXXXXXXXXXXXXXXXXXXTKXXXXRRVVDGXXXXXXKPASPSPAGTSNAEEKGNGESLSPEKNTAVAAGKRKQAA 106
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6593.17435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFE0_ECTSI4.970e-2178.30DNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8L... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6593contigEcto-sp13_S_contig6593:6005..7515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score105.5
Seed ortholog evalue2.3e-20
Seed eggNOG ortholog2880.D8LFE0
Preferred nameLIG1
Model size607
KEGG rclassRC00005
KEGG koko:K10747
KEGG ReactionR00381,R00382,R10822,R10823
KEGG Pathwayko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430
Hectar predicted targeting categoryother localisation
GOsGO:0000012,GO:0000228,GO:0000278,GO:0000302,GO:0000726,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003909,GO:0003910,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006271,GO:0006273,GO:0006281,GO:0006283,GO:0006284,GO:0006289,GO:0006297,GO:0006298,GO:0006302,GO:0006303,GO:0006304,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009636,GO:0009653,GO:0009987,GO:0010035,GO:0016043,GO:0016070,GO:0016874,GO:0016886,GO:0022402,GO:0022616,GO:0031974,GO:0031981,GO:0032502,GO:0033260,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0035510,GO:0035753,GO:0042221,GO:0042493,GO:0042542,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043570,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044728,GO:0044786,GO:0046483,GO:0046677,GO:0048856,GO:0050896,GO:0051103,GO:0051276,GO:0051716,GO:0070013,GO:0070988,GO:0071704,GO:0071840,GO:0080111,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363,GO:1901576,GO:1901700,GO:1902969,GO:1903047,GO:1903461
Exons2
EggNOG free text desc.DNA ligase (ATP) activity
EggNOG OGsCOG1793@1,KOG0967@2759
EC6.5.1.1,6.5.1.6,6.5.1.7
Cds size483
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463908.3574646-UTR-Ecto-sp13_S_contig6593:6004..61261681463908.3574646-UTR-Ecto-sp13_S_contig6593:6004..6126Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6593 6005..6126 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463908.380501-CDS-Ecto-sp13_S_contig6593:6126..61431681463908.380501-CDS-Ecto-sp13_S_contig6593:6126..6143Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6593 6127..6143 +
1681463908.393883-CDS-Ecto-sp13_S_contig6593:7049..75151681463908.393883-CDS-Ecto-sp13_S_contig6593:7049..7515Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6593 7050..7515 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6593.17435.1prot_Ecto-sp13_S_contig6593.17435.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6593 6127..7515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6593.17435.1

>prot_Ecto-sp13_S_contig6593.17435.1 ID=prot_Ecto-sp13_S_contig6593.17435.1|Name=mRNA_Ecto-sp13_S_contig6593.17435.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=161bp
MQKSITSFFGGPKDGAVDPPSPPKPRPPSAKPSPKAKPKAAKKAAKPAAT
KKSRRVVDGDGEDEATPAPHSPAGTSNAEDKGDGENLTPEKNTAVASGKR
KQSAGEAGGGEEEEETAAAAAPRAGKAGDDELEGGEDASAQKKPRRLRRL
AEKKANAAAED
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mRNA from alignment at Ecto-sp13_S_contig6593:6005..7515+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6593.17435.1 ID=mRNA_Ecto-sp13_S_contig6593.17435.1|Name=mRNA_Ecto-sp13_S_contig6593.17435.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1511bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6593:6005..7515+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAACGACACGAGCAAGAGACGTACCATAGCACCTACAGAAGGCTGGTGAG
ATCTCCCAGCCGATTGGCTTGTGAGGGGAACTAGGAAGGAATCCGCCTGC
ATTCGAGAACGACAAGCAACCCATGCAGAAGTCAATCACGTGAGCTTTGA
CTGACTGTGGATCTCTTTTTTCTTGAATTTGAAATTTGGCATGTTGCAGC
AACGTGTCTGTCGTTCTCTTCCCGTGTGATCGACGCGTTGTCCCCTCTCC
CGTTCCCTTCGCTCGACCAGATAAGCGCCACTTTATCGTTCCACGTGTTG
GCTGTACATGGTTCCCATGCCAGGATCGCCAACGTGCTCACGCGCTACCA
GACCGAACTGCGGTTCAAAGCACAAGCGTTTTTTTTTTTTACAGTTCAAA
AGTTTGCCGCTCCTTCCTGGCAAGTCTGACCCCTTACGCGAGAGATAGAG
CAAGAGCGCACACCTACCAGCCCCGGTGCGGTAGTCGAGGAAAGTTGAAC
TTTGGGTCACAGAGGAAGTCAATTACTGCTTCTGTCGCCGCGGGGTGAGA
GCTTGAGACCTTGACATGTTGGCGCGGGGGAAATTAGTTTAGTGTGGATC
TCTGGAAGTTGCGCGAATTCGCGGCATGCTTTTATCGCCGCGGGGTGAGA
GCTTGAGACCTTGACATGTTGGCGCGGGGGAAATTAGTATAGTGTGGAAC
TCTGGAAGTTGCGCGAATTCGCGGCAATGTTTTACTTGAAAAATAGACTC
GGAAGCTTCAAGCAGCGGTAGTTGCACCAAGCACATGGAGCGTGCCGCGG
AAGTGCGGTGTAAAGCAATGGGTGCTGTCATAACTCCTCGGTGTGATAGT
TATAGAACCTTTATCTAGACGCAGGAAATGTGCTACCAACAGCAGTTTTG
TAGCCAAGGCAGCAATCACATGTCAACGCGTCCCGCATACGTGCCGGTCG
AAAGACATTCCGCTTCCAAGTCTCCTCTTACAACGCCGCCGCCCGGTTGC
CCCCCCCCCCCACCGCCGGTGCCCGACGCCTATCCCTGCGCGAAGCTCAT
TTTTCGGAGGGCCGAAAGACGGGGCAGTAGACCCGCCTTCCCCCCCCAAG
CCGCGCCCGCCTTCTGCCAAACCATCTCCCAAGGCCAAGCCGAAGGCGGC
CAAGAAGGCCGCCAAGCCCGCCGCTACCAAGAAATCGAGGCGCGTTGTCG
ACGGCGACGGTGAGGATGAGGCGACGCCGGCGCCTCACTCTCCGGCGGGG
ACCAGCAACGCCGAGGACAAGGGCGACGGGGAGAACCTCACCCCGGAGAA
GAACACGGCGGTAGCCTCCGGAAAGCGGAAGCAGTCCGCGGGAGAGGCGG
GCGGCGGCGAGGAGGAGGAGGAGACGGCAGCCGCGGCGGCACCCCGAGCC
GGGAAGGCCGGGGACGACGAGCTCGAGGGGGGGGAGGATGCGTCGGCCCA
GAAGAAGCCTAGGAGGTTGCGCCGCCTCGCCGAGAAGAAGGCCAACGCCG
CTGCGGAGGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6593:6005..7515+

>mRNA_Ecto-sp13_S_contig6593.17435.1 ID=mRNA_Ecto-sp13_S_contig6593.17435.1|Name=mRNA_Ecto-sp13_S_contig6593.17435.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6593:6005..7515+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGAAGTCAATCACCTCATTTTTCGGAGGGCCGAAAGACGGGGCAGT
AGACCCGCCTTCCCCCCCCAAGCCGCGCCCGCCTTCTGCCAAACCATCTC
CCAAGGCCAAGCCGAAGGCGGCCAAGAAGGCCGCCAAGCCCGCCGCTACC
AAGAAATCGAGGCGCGTTGTCGACGGCGACGGTGAGGATGAGGCGACGCC
GGCGCCTCACTCTCCGGCGGGGACCAGCAACGCCGAGGACAAGGGCGACG
GGGAGAACCTCACCCCGGAGAAGAACACGGCGGTAGCCTCCGGAAAGCGG
AAGCAGTCCGCGGGAGAGGCGGGCGGCGGCGAGGAGGAGGAGGAGACGGC
AGCCGCGGCGGCACCCCGAGCCGGGAAGGCCGGGGACGACGAGCTCGAGG
GGGGGGAGGATGCGTCGGCCCAGAAGAAGCCTAGGAGGTTGCGCCGCCTC
GCCGAGAAGAAGGCCAACGCCGCTGCGGAGGAC
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