mRNA_Ecto-sp13_S_contig6579.17409.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6579.17409.1
Unique NamemRNA_Ecto-sp13_S_contig6579.17409.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6579.17409.1 vs. uniprot
Match: D8LCL7_ECTSI (Flagellar associated protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCL7_ECTSI)

HSP 1 Score: 634 bits (1634), Expect = 3.440e-223
Identity = 433/470 (92.13%), Postives = 438/470 (93.19%), Query Frame = 1 
Query:  118 MTTRGELSVGGTTNVPSLADQIKRFQPRVFSNTESASRVFDRSAKDNPAREALTIKCVKVIVDNFERLPAHDATGGFNVGYRKDDGENGDCRQDETKDGGXXXXXXXXVDASPATATWSAAERTDAARGDAGFGGMSGREGGETKLKGDDELPYPQQQEGKVIPAKLLQLISAGLSTDLDPKVGALYVFDENYWKRRCVEKLGWQNCQIAEHGLTWKQLFFEAYVSTQLETFDAQKETFGHLLEFLASCQEYVFTLRIRQLLAHPDMRAVCEVLQNLTMLDVTYSVNSIGMKYERMLFGMKISDANCLAKAIQATQTMASLVLQGNLIDDDLMRMLMTGLIRNSTITYLDVSHNKITNHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIAREACSSLSMVLRKPGKVLATLDLSCNELQ 1527
            M TRGELSVGGTTNVPSLADQIKRFQPRVFSNTESASRVFDRSAKDNPAREALTIKCVKVIVDNFERLPAHDATGGFNVGYRK+D ENGD          XXXXXXXXVDAS       AAERTD A GDAGFGGM   EGG+TKL+GDDE P+PQQQEG+VIPAK LQLISAGLSTDLDPKVGALYVFDENYWKRRCVEKLGWQNCQIAEHGLTWKQLFFEAYVSTQLETFDAQKETF HLLEFLASCQEYVF LRIRQLLAHPDMRAVCEVLQNLTMLDVTYSVNSIGMKYERMLFGMKISDANCLA AIQATQTMASLVLQGNLIDDDLMRMLMTGLIRNSTITYLDVSHNKIT   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIAREACSSLSMVLRKPGKVLATLDLSCNELQ
Sbjct:    1 MATRGELSVGGTTNVPSLADQIKRFQPRVFSNTESASRVFDRSAKDNPAREALTIKCVKVIVDNFERLPAHDATGGFNVGYRKNDDENGDXXXXXXXX--XXXXXXXXVDAS-------AAERTDTAGGDAGFGGMVEGEGGDTKLEGDDEQPHPQQQEGRVIPAKFLQLISAGLSTDLDPKVGALYVFDENYWKRRCVEKLGWQNCQIAEHGLTWKQLFFEAYVSTQLETFDAQKETFDHLLEFLASCQEYVFNLRIRQLLAHPDMRAVCEVLQNLTMLDVTYSVNSIGMKYERMLFGMKISDANCLANAIQATQTMASLVLQGNLIDDDLMRMLMTGLIRNSTITYLDVSHNKITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIAREACSSLSMVLRKPGKVLATLDLSCNELQ 461
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BLAST of mRNA_Ecto-sp13_S_contig6579.17409.1 vs. uniprot
Match: A0A835Z8G8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G8_9STRA)

HSP 1 Score: 279 bits (714), Expect = 3.620e-85
Identity = 154/354 (43.50%), Postives = 192/354 (54.24%), Query Frame = 1 
Query:  136 LSVGGTTNVPSLADQIKRFQPRVFSNTESASRVFDRSAKDNPAREALTIKCVKVIVDNFERLPAHDATGGFNVGYRKDDGENGDCRQDETKDGGXXXXXXXXVDASPATATWSAAERTDAARGDAGFGGMSGREGGETKLKGDDELPYPQQQEGKVIPAKLLQLISAGLSTDLDPKVGALYVFDENYWKRRCVEKLGWQNCQIAEHGLTWKQLFFEAYVSTQLETFDAQKETFGHLLEFLASCQEYVFTLRIRQLLAHPDMRAVCEVLQNLTMLDVTYSVNSIGMKYERMLFGMKISDANCLAKAIQATQTMASLVLQGNLIDDDLMRMLMTGLIRNSTITYLDVSHNKITNHG 1197
            L+VGGTT+V SL DQ++RF PR F      +  F R A D  A+E L+ KCV+ IVDNFER+P ++                                                                                          +PAK L  I+  LST LDP+V ALYVFDENYWKRRCVE+LGW  CQ+ EHGLTWKQLFFE YV+  +E F A       LL+ L SCQ+YVFTL++ Q+L H DM  VC  L NL  LD+TY V +IGMKYERML GMKISDA  LA+A+ A   + +L L+G L+DDDL+RML  GL R +T+T+LD+SHN+I +HG
Sbjct:    3 LTVGGTTDVSSLKDQVQRFVPRKFEAPPEGTSAFLRPALDGLAKEQLSHKCVRTIVDNFERIPVYNG-----------------------------------------------------------------------------------------VPAKFLSAITTNLSTSLDPQVAALYVFDENYWKRRCVEQLGWSACQLIEHGLTWKQLFFENYVARSIEAFKAPPPPGDALLQLLRSCQDYVFTLQVGQMLGHLDMERVCACLPNLACLDLTYGVRNIGMKYERMLLGMKISDAAALARALPAAPCLTTLALRGGLVDDDLLRMLAAGLARAATLTHLDLSHNRIADHG 267
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BLAST of mRNA_Ecto-sp13_S_contig6579.17409.1 vs. uniprot
Match: A0A7S2S000_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S000_9STRA)

HSP 1 Score: 208 bits (529), Expect = 3.590e-59
Identity = 104/182 (57.14%), Postives = 128/182 (70.33%), Query Frame = 1 
Query:  679 VFDENYWKRRCVEKLGWQNCQIAEHGLTWKQLFFEAYVSTQLETFDAQKETFGHLLEFLASCQEYVFTLRIRQLLAHPDMRAVCEVLQNLTMLDVTYSVNSIGMKYERMLFGMKISDANCLAKAIQ---------ATQTMASLVLQGNLIDDDLMRMLMTGLIRNSTITYLDVSHNKITNHG 1197
            VFDENYWKR C+ K GW+NC++ EHGLTWKQL+FE  +  +LE F    +    L +FL +CQ+Y+FTL IR+L +H DM  VC  L NLT LD+TY V   GM+Y RM+FGMKISDAN LA  +              + S+VL  NLIDDDL+RMLMTGLI+N +IT+LDVSHNKITNHG
Sbjct:    1 VFDENYWKRCCISKFGWENCELIEHGLTWKQLYFEKLLQEKLEDFAPDGDR-DELFDFLEACQDYIFTLTIRELRSHLDMSEVCSRLPNLTKLDLTYGVKKCGMEYVRMMFGMKISDANSLATCLALGGGPGTGVGGGILTSVVLTCNLIDDDLLRMLMTGLIKNDSITHLDVSHNKITNHG 181
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BLAST of mRNA_Ecto-sp13_S_contig6579.17409.1 vs. uniprot
Match: A0A7S2E3F2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2E3F2_9STRA)

HSP 1 Score: 202 bits (514), Expect = 6.300e-56
Identity = 99/198 (50.00%), Postives = 133/198 (67.17%), Query Frame = 1 
Query:  604 IPAKLLQLISAGLSTDLDPKVGALYVFDENYWKRRCVEKLGWQNCQIAEHGLTWKQLFFEAYVSTQLETFDAQK---------------ETFGHLLEFLASCQEYVFTLRIRQLLAHPDMRAVCEVLQNLTMLDVTYSVNSIGMKYERMLFGMKISDANCLAKAIQATQTMASLVLQGNLIDDDLMRMLMTGLIRNST 1152
            IPA+ ++ I A L  +LDP++ A+ VFDENYWKR C+E+ GW +C + EHGLTWK+LFFE Y    LE+  A +               +    +LE L  CQ+Y+FTL ++QL +HPDM  V  +L NL+ L+++Y V   GM YERM+FGMKISDAN L++A+  T  + +LVLQGNLIDDDL+RML TGLI N +
Sbjct:   33 IPAEHMREIVARLPVELDPRITAVSVFDENYWKRCCIERFGWHHCHLVEHGLTWKRLFFETYAQECLESLQADEGKEXXXXXXXXXXXEDPLDEVLELLKVCQDYIFTLTVKQLPSHPDMERVLALLPNLSKLELSYGVGKCGMNYERMMFGMKISDANHLSRALMVTPNLTTLVLQGNLIDDDLLRMLTTGLINNES 230
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BLAST of mRNA_Ecto-sp13_S_contig6579.17409.1 vs. uniprot
Match: K3WV20_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WV20_GLOUD)

HSP 1 Score: 198 bits (503), Expect = 2.270e-54
Identity = 99/188 (52.66%), Postives = 132/188 (70.21%), Query Frame = 1 
Query:  592 EGKV--IPAKLLQLISAGLSTDLDPKVGALYVFDENYWKRRCVEKLGWQNCQIAEHGLTWKQLFFEAYVSTQLETFDAQKETFGHLLEFLASCQEYVFTLRIRQLLAHPDMRAVCEVLQNLTMLDVTYSVNSIGMKYERMLFGMKISDANCLAKAIQATQTMASLVLQGNLIDDDLMRMLMTGLIRNS 1149
            E KV  +P K L  + A L  DL+  V A  V DENYWKR C+ KL W+N QI +HGLTWKQLF E ++   LE FDA  +   HL++ + +CQEY+FTL I QLL+H D+  +C  ++NLT L +TY V  +GMKYERMLFGMKISDA  L+  ++ T+T+ +L L  NL+DDDL+RM+MTGL++N+
Sbjct:   67 ESKVHSVPRKFLPDVMARLPLDLNVCVSAPNVSDENYWKRCCMSKLAWKNLQIEDHGLTWKQLFLEKHLQDLLEDFDATTDDPDHLVDVVKACQEYIFTLEITQLLSHLDLNELCSHMKNLTRLQLTYGVKQVGMKYERMLFGMKISDATNLSHIVKNTKTLTTLWLPSNLLDDDLLRMVMTGLVKNN 254
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BLAST of mRNA_Ecto-sp13_S_contig6579.17409.1 vs. uniprot
Match: A0A2P4XTG6_9STRA (Myosin-like protein (Fragment) n=2 Tax=Phytophthora TaxID=4783 RepID=A0A2P4XTG6_9STRA)

HSP 1 Score: 192 bits (489), Expect = 3.220e-53
Identity = 98/169 (57.99%), Postives = 120/169 (71.01%), Query Frame = 1 
Query:  664 VGALYVFDENYWKRRCVEKLGWQNCQIAEHGLTWKQLFFEAYVSTQLETFDAQKETFGHLLEFLASCQEYVFTLRIRQLLAHPDMRAVCEVLQNLTMLDVTYSVNSIGMKYERMLFGMKISDANCLAKAIQATQTMASLVLQGNLIDDDLMRMLMTGLIRNSTITYLDV 1170
            V A  V DENYWKR C+ K  W+N QIA+HGLTWKQLF E ++   LE FD   +   HLL  + +  EYVFTL I QLL+H D+  VC  L+NLT L VTY V  IGMKYERMLFGMKISDA  L+  I+ T T+ +L L  NL+DDDL+RMLMTGL++N++IT LD+
Sbjct:    3 VTAPNVTDENYWKRCCLSKTQWKNIQIADHGLTWKQLFLEKHLQDLLEDFDPSVDDHDHLLAVVKASSEYVFTLEINQLLSHLDLNEVCAQLRNLTRLRVTYGVKQIGMKYERMLFGMKISDATNLSHIIKMTSTLTTLWLPSNLLDDDLLRMLMTGLVKNTSITSLDL 171
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BLAST of mRNA_Ecto-sp13_S_contig6579.17409.1 vs. uniprot
Match: A0A7R9UD69_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UD69_9STRA)

HSP 1 Score: 195 bits (495), Expect = 3.770e-53
Identity = 97/182 (53.30%), Postives = 119/182 (65.38%), Query Frame = 1 
Query:  601 VIPAKLLQLISAGLSTDLDPKVGALYVFDENYWKRRCVEKLGWQNCQIAEHGLTWKQLFFEAYVSTQLETFDAQKETFGHLLEFLASCQEYVFTLRIRQLLAHPDMRAVCEVLQNLTMLDVTYSVNSIGMKYERMLFGMKISDANCLAKAIQATQTMASLVLQGNLIDDDLMRMLMTGLIRN 1146
            VIP+   QL ++ L T ++P V A Y+F E YWKRRC  K  W NC+I EHGL WKQL+FE +    LE +D + E    LL  LA C EY+FTL   QLL HPDM  VC +  NL  L + Y V   GM YER+LFGMKISDA  L K ++AT T+ +L+L  NL+DDDL+RMLM GLI N
Sbjct:   74 VIPSTHAQLFTSQLPTTINPIVAAQYIFSEGYWKRRCASKYAWHNCRIQEHGLMWKQLYFETHAQETLEAWDDEDEPEETLLNQLAVCAEYIFTLTAHQLLGHPDMSRVCALFPNLCRLRIRYGVRKTGMDYERILFGMKISDAQGLTKYLKATDTLTTLILSMNLLDDDLLRMLMVGLIVN 255
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BLAST of mRNA_Ecto-sp13_S_contig6579.17409.1 vs. uniprot
Match: H3GJR7_PHYRM (Uncharacterized protein n=16 Tax=Phytophthora TaxID=4783 RepID=H3GJR7_PHYRM)

HSP 1 Score: 195 bits (495), Expect = 3.950e-53
Identity = 99/190 (52.11%), Postives = 129/190 (67.89%), Query Frame = 1 
Query:  586 QQEGKVIPAKLLQLISAGLSTDLDPKVGALYVFDENYWKRRCVEKLGWQNCQIAEHGLTWKQLFFEAYVSTQLETFDAQKETFGHLLEFLASCQEYVFTLRIRQLLAHPDMRAVCEVLQNLTMLDVTYSVNSIGMKYERMLFGMKISDANCLAKAIQATQTMASLVLQGNLIDDDLMRMLMTGLIRNSTI 1155
            Q + + +P + L  + A L  DLD  V A  V DENYWKR C+ +  W+N QIA+HGLTWKQLF E Y+   LE FD   +   HL+  + +  EY+FTL I QLL+H D+  +C  L NLT L VTY V  IGM+YERMLFGMKISDA  L+  I+A+ T+ +L L  NL+DDDL+RMLMTGL++N++I
Sbjct:   65 QPKAQNVPRQFLPEVMARLPLDLDVCVTAPNVTDENYWKRCCLSQTQWKNTQIADHGLTWKQLFLEKYLQDLLEDFDPAGDDHDHLMAVVKASSEYIFTLEIDQLLSHLDLNEICAQLHNLTRLRVTYGVKQIGMRYERMLFGMKISDATNLSHIIKASNTLTTLWLPSNLLDDDLLRMLMTGLVKNTSI 254
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BLAST of mRNA_Ecto-sp13_S_contig6579.17409.1 vs. uniprot
Match: A0A8K1FGP6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FGP6_PYTOL)

HSP 1 Score: 194 bits (492), Expect = 8.310e-53
Identity = 94/182 (51.65%), Postives = 127/182 (69.78%), Query Frame = 1 
Query:  604 IPAKLLQLISAGLSTDLDPKVGALYVFDENYWKRRCVEKLGWQNCQIAEHGLTWKQLFFEAYVSTQLETFDAQKETFGHLLEFLASCQEYVFTLRIRQLLAHPDMRAVCEVLQNLTMLDVTYSVNSIGMKYERMLFGMKISDANCLAKAIQATQTMASLVLQGNLIDDDLMRMLMTGLIRNS 1149
            +P K L  + + L  D+D  + A  + DENYWKR C+ K  W+N QI+EHGLTWKQLF E  +   LE FD+  +    L++ + +CQEY+FTL I QLL+H D+  VC  L+NLT L +TY V  IGMKYERMLFGMKISDA  L+  ++ T+T+ +L L  NL+DDDL+RM+MTGL++N+
Sbjct:   70 VPRKFLPEVMSRLPLDMDVCISAPNITDENYWKRCCMSKSAWKNLQISEHGLTWKQLFMEKNLQDMLEGFDSSTDDNDELIDVVKACQEYIFTLEIDQLLSHLDLNEVCSHLKNLTRLRLTYGVKQIGMKYERMLFGMKISDATNLSHIVKNTKTLTTLWLPNNLLDDDLLRMVMTGLVKNN 251
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6579.17409.1 vs. uniprot
Match: A0A2D4C6H8_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C6H8_PYTIN)

HSP 1 Score: 192 bits (489), Expect = 2.600e-52
Identity = 96/191 (50.26%), Postives = 128/191 (67.02%), Query Frame = 1 
Query:  577 YPQQQEGKVIPAKLLQLISAGLSTDLDPKVGALYVFDENYWKRRCVEKLGWQNCQIAEHGLTWKQLFFEAYVSTQLETFDAQKETFGHLLEFLASCQEYVFTLRIRQLLAHPDMRAVCEVLQNLTMLDVTYSVNSIGMKYERMLFGMKISDANCLAKAIQATQTMASLVLQGNLIDDDLMRMLMTGLIRNS 1149
            Y Q  +   +P K L  + A L  D+D  V A  + DENYWKR C     W+N QI +HGLTWKQ++ E ++   LE FDA  +    L++ + +CQE +FTL I QLL+H D+  +C  L+NLT L +TY V SIGMKYERMLFGMKISDA  L+  ++ T+T+ SL L  NL+DDDL+RMLMTGL++N+
Sbjct:   58 YRQDPKVYNVPTKFLPEVMARLPLDMDVCVSAPNITDENYWKRCCKHNSAWKNLQIQDHGLTWKQMYLEKHLQDLLEGFDANADDIDRLVDIVKACQELIFTLEIDQLLSHLDLNEICVHLKNLTRLRLTYGVKSIGMKYERMLFGMKISDATNLSHIVKNTKTLTSLWLPSNLLDDDLLRMLMTGLVKNT 248
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6579.17409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCL7_ECTSI3.440e-22392.13Flagellar associated protein n=2 Tax=Ectocarpus Ta... [more]
A0A835Z8G8_9STRA3.620e-8543.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2S000_9STRA3.590e-5957.14Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2E3F2_9STRA6.300e-5650.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
K3WV20_GLOUD2.270e-5452.66Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2P4XTG6_9STRA3.220e-5357.99Myosin-like protein (Fragment) n=2 Tax=Phytophthor... [more]
A0A7R9UD69_9STRA3.770e-5353.30Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
H3GJR7_PHYRM3.950e-5352.11Uncharacterized protein n=16 Tax=Phytophthora TaxI... [more]
A0A8K1FGP6_PYTOL8.310e-5351.65Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4C6H8_PYTIN2.600e-5250.26Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6579contigEcto-sp13_S_contig6579:192..7016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score631.3
Seed ortholog evalue3.8e-178
Seed eggNOG ortholog2880.D8LCL7
Model size1529
KEGG koko:K20865
KEGG Pathwayko04621,map04621
Hectar predicted targeting categoryother localisation
Exons10
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
Ec32 ortholog descriptionflagellar associated protein
Ec32 orthologEc-03_002410.1
Cds size1527
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6579.17409.1prot_Ecto-sp13_S_contig6579.17409.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6579 192..7016 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463906.3487813-CDS-Ecto-sp13_S_contig6579:191..2941681463906.3487813-CDS-Ecto-sp13_S_contig6579:191..294Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6579 192..294 -
1681463906.3610861-CDS-Ecto-sp13_S_contig6579:1096..12541681463906.3610861-CDS-Ecto-sp13_S_contig6579:1096..1254Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6579 1097..1254 -
1681463906.3739917-CDS-Ecto-sp13_S_contig6579:1431..15021681463906.3739917-CDS-Ecto-sp13_S_contig6579:1431..1502Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6579 1432..1502 -
1681463906.3865836-CDS-Ecto-sp13_S_contig6579:1978..20841681463906.3865836-CDS-Ecto-sp13_S_contig6579:1978..2084Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6579 1979..2084 -
1681463906.4023678-CDS-Ecto-sp13_S_contig6579:2769..29041681463906.4023678-CDS-Ecto-sp13_S_contig6579:2769..2904Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6579 2770..2904 -
1681463906.414878-CDS-Ecto-sp13_S_contig6579:3708..37951681463906.414878-CDS-Ecto-sp13_S_contig6579:3708..3795Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6579 3709..3795 -
1681463906.428517-CDS-Ecto-sp13_S_contig6579:4216..43001681463906.428517-CDS-Ecto-sp13_S_contig6579:4216..4300Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6579 4217..4300 -
1681463906.4373448-CDS-Ecto-sp13_S_contig6579:4668..47881681463906.4373448-CDS-Ecto-sp13_S_contig6579:4668..4788Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6579 4669..4788 -
1681463906.4460552-CDS-Ecto-sp13_S_contig6579:5417..58281681463906.4460552-CDS-Ecto-sp13_S_contig6579:5417..5828Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6579 5418..5828 -
1681463906.4547777-CDS-Ecto-sp13_S_contig6579:6764..70161681463906.4547777-CDS-Ecto-sp13_S_contig6579:6764..7016Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6579 6765..7016 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6579.17409.1

>prot_Ecto-sp13_S_contig6579.17409.1 ID=prot_Ecto-sp13_S_contig6579.17409.1|Name=mRNA_Ecto-sp13_S_contig6579.17409.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=509bp
ACSPYSQTFSRFCSTHSSDSGQFTPAAEKQRVISAQQPDMTTRGELSVGG
TTNVPSLADQIKRFQPRVFSNTESASRVFDRSAKDNPAREALTIKCVKVI
VDNFERLPAHDATGGFNVGYRKDDGENGDCRQDETKDGGGGGGGGGGVDA
SPATATWSAAERTDAARGDAGFGGMSGREGGETKLKGDDELPYPQQQEGK
VIPAKLLQLISAGLSTDLDPKVGALYVFDENYWKRRCVEKLGWQNCQIAE
HGLTWKQLFFEAYVSTQLETFDAQKETFGHLLEFLASCQEYVFTLRIRQL
LAHPDMRAVCEVLQNLTMLDVTYSVNSIGMKYERMLFGMKISDANCLAKA
IQATQTMASLVLQGNLIDDDLMRMLMTGLIRNSTITYLDVSHNKITNHGA
RLLSKLLGENSVLTTLNLADNQIHAEGGRYIGRALRGNTSLVTLNLRLNR
LTDEGGRMLVEGLHDNPTLACLNLSANSIAREACSSLSMVLRKPGKVLAT
LDLSCNELQ
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mRNA from alignment at Ecto-sp13_S_contig6579:192..7016-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6579.17409.1 ID=mRNA_Ecto-sp13_S_contig6579.17409.1|Name=mRNA_Ecto-sp13_S_contig6579.17409.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6825bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6579:192..7016- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGTGTAGCCCGTACTCTCAAACGTTTTCTCGATTTTGCAGCACCCACAG
CAGTGACAGTGGTCAGTTTACACCTGCAGCTGAAAAACAGCGAGTCATCT
CCGCTCAACAGCCGGATATGACGACACGGGGCGAGCTTTCTGTCGGCGGC
ACAACAAATGTGCCGTCCCTAGCCGACCAGATCAAGCGCTTCCAGCCGAG
GGTTTTCAGCAACACCGAGAGCGCCTCAAGAGTATTCGACCGCTCAGCCA
AGGTGGGGTCAAATATATCTCCAATTCTGATTGTCGCTGCGGCGACGTTC
TTGCCAACAGAATTCATATGCTCAAATCGGGATTTGGTGTCTAGACTGGT
CTGCAGGTAAGAACTGTACGGTGTGTGTACTCGGCAGAGATATGCAGTAG
ACTCGGGGAAACTGTAGACTGCAGCGTTGCTGCAACATTGGTTTGATGGG
TACTTCTTTAGCGGCCGTCCTCGGAGCACGTACAATCCTTGTAATTGTTT
CTGTTGTGTGGCACACTACGTAGACTACTTTGGAAGCACCCGAGCACAAT
AAACTCGTTCGTCGTGATTGGTGAGTACCACGTGGAAAACAACGGCGGTT
GCAACCGACGATAAAACAGCACGAGGGTTTCAGCAGGGTTCGGATGTATA
TGTTGTCTGGGGGGTTGGCTTGGTTCTTGAGGGTGCAAATCTGCCGATGC
AAGGGGGTGTATCCAATCAAAAACACGTGTCGTTTCTTGCATCTTCTGCT
TCACGAGAGAACAGCTTTCCTGTGTAGACGTGGTTTCACGGCACCGTGGA
CCATGTGCTGCTCCTCCTGTTCTTGTGATGGTTTTCTGGTCTTCATCCTT
GGCGTCATTACTGAGCTCTACACCCATGCGAACCTACGGCACCTGACTTT
CACCATGCACTTTACCAGCGTCCGAGTTGTGACACGGCAGCGTGCCTCTG
CCTCGTCTTCTGTGCACGCATCTATGAGAAAATGTTCTCAAGCGTATACC
TACCGTTCCACGTCGCGCACAACAGTGGAATGTAACAGAACTCTACTTTT
TTTCTTTCCAAAACACAACAAAACGTGTATGCGTAGTGCATCTCTCCCAC
AATCGTGCTCCTCTAACGCCGACGCGAATATTCCCTTGGCCACGCGCAAG
TTCGCCCCAAATGCAACCTTGGCCTTGCACGATGCCAGGACAATCCGGCG
CGAGAGGCGCTGACGATCAAGTGCGTCAAGGTCATCGTCGACAACTTCGA
ACGGCTGCCAGCGCACGATGCCACCGGTGGGTTCAATGTCGGTTACCGCA
AGGACGACGGCGAGAACGGCGACTGTCGCCAAGACGAAACGAAGGACGGC
GGCGGCGGCGGCGGCGGCGGCGGTGGAGTTGACGCTAGCCCTGCCACAGC
AACGTGGAGCGCGGCGGAGCGAACAGACGCTGCCAGGGGCGATGCAGGAT
TTGGCGGGATGAGCGGGAGAGAGGGGGGAGAGACCAAGCTGAAGGGAGAT
GATGAGCTGCCATATCCTCAGCAACAAGAGGGCAAGGTCATACCCGCGAA
GCTTTTGCAGCTGATTAGCGCTGGCTTGAGTACTGACTTGGATCCGAAGG
TGAGCGCGACGGAGGATGCATGGAGTTGTTGACGGTGGTCATTAGTAGGC
TACACAGAAAAATTGATTTAGTAAACATATGGGATAAAGTATTCAATCCG
TGCTTGGGGTTAGGGTTAGGGTTAGGGATAGGGTCTACGTGCCCCCTTCC
TATTATTTTTCCAGATACTCTTTAAATCCTGCGTAGGCGTTCCGTGGTCA
TGGATTTGCTCGAAGCTTTTTCTCTTATGTTTAGATACAAAGCTTATCTA
GCTGTAAAAAGATGGCGACAACGGCTCGCCACGGCTTGAAGTGCTGGTGT
TTTGACCCACCCCCTGCCATGATCAAAAACAGGTTACGAATTCCCTTGCA
GCAACTACATTTCTGCCGTTTGGCGACATGCAGAGTGAAGCCCGTCGAGC
ATAGGGAGCAGAACCCAAAAAATAAATATCAGTGTTGTGGCGAAACTCTT
GAGTGAAATAACATCATTCACGGCCAGTTTTGGATGCCCCATCATGGCCC
CATGTCGATCGTGCCTCATCTCAACAGTATTGGATGGAGGCGCAACATCG
GCAGCAACTTGCAAGCCATTGGCGCGCACATTAAACGAGAACTCGCTTTC
TATTTGTTTCGTCCACGGGGGGTGGAAGGTAGGAGCTTTGTACGTGTTTG
ACGAGAACTACTGGAAACGGCGATGCGTGGAGAAGCTTGGCTGGCAAAAC
TGCCAGATCGCCGAGCACGGGCTGACATGGAAGCAGCTGTTTTTTGAGGT
GAGTCTTGCTTGCGGCGGGCCCATACATACACCCTATTTCCCGCGACACC
TCTCATTGGTGTAGAAAAGGTGGTTAATTTGCCGGGGCCGGTTATTCCCT
AGGGTACCGTTATAAAAGGGCTCTTTTTTCCCTGACGCAGACCATGAAAT
CCAGAATCGCCTGAGAAATAACCGTGATTGGATTACCGTACAGCCGGATT
TCCCGTGTTTTCGACAAGGGTATCGAGCTCCTTAGTCAGTCTCCGAGATG
AACTTTACCAGCTCTATCTCAAGGGGAGAAATATGCAAGGCAGCCTTGGC
CCTTGACGAGCTCACCCTCTCCGTCCGTTTTTCGTGCCCACGGCGGGCGA
ACGCTGCTACATGAAGGCCTACGTGAGCACCCAGCTGGAGACGTTCGACG
CCCAGAAGGAGACGTTCGGCCACCTCCTGGAGTTCCTTGCGTCGTGTCAG
GTCCGCCGCCAACCCTCCCCGCGCCGTGTCGTGTGCGTGCAACCAATTTC
AGGAAAAGAGACTCTGTCGGTAGGCAAATAGAAGCGGGGGGGGGTGGGGG
GGGAGCGGCTCCGGAGAAACCGTTAGCTCTAGGGCGACGTTGTGCGTGTC
GAAAAGATCACGCCTCCACCGTCAACATTCCCCCCCCGCACCTGATTATC
GCTTCCGTCGATAAGGTGTATACCGCCAGAAGAGCTCATGGAGGAGCAAA
CCTCCAAAATGTTCCGCATATCCTCCTCTCCACTACCATAGGAACAATAG
GGACCGCCAAAAGGAGAGCAGGCGAGGTTTCCCTGAACATGGTTGACTGT
TTTTCCTCTCTCCCTTACACCGCGCTTCCTGGCGAATTGTCGTCCGTGTT
TTGCGTCGTTGGCGGCGATAGGAGTACGTCTTCACCCTCCGCATCCGACA
ACTCTTGGCGCACCCCGACATGCGCGCGGTGTGCGAGGTCCTGCAGAACC
TCACCATGGTGCGTGTTCACTCTCCTCCGTTTTGCGATAGCGGGAAAACC
CATGGGATGAACGTGTTCGGGGGTTCCCGGCAGAGTACCGATCTACGGGG
TCTCCGGGGGGGTGCGTGGATGACATCATGGGCATGACGCATGGACCCCT
CCTTGCCTCCCGTATGTCTATAACTCTGTAGGGTGTTGAGTCAACCTTCT
TTCTCTTTCGGCCTCTCACGAAGCTGCTACAATACCTGAACAACTATGAG
CTGTCTGCTTGGGTGCCCTGCCCGACACGCCTGTGAGCCTCATCCGCATC
GATTGCGTGTTGACTTGTCGCTGCTTCTCGGCTCTCGTTGGTGTCCAATA
GGGGTCCCTGGAGACAAAAAGTGCCTGGGTCTAGCCTCAACACTGTATTC
ATCACCGCCGAGTACAGGCTACCATATACTGGAGTAGAGTATAGTGCAGG
ATCCTCTGGTTGAGGTCTGTTTCTTGAACCCAATTTTTTCAATCGTCGCG
ATTTTGTTTTTCGAACGGGCAGTTTCCTGACCGCGGGCCCGTACTGTAGG
TAGTTGGGGCTTTCCCACGCCTTGGCGCTGGTTGTTCCGCCAAGGGATGG
TTCGAAAATCAATACCCTCCCCCTCCCCAACAGTTTCTGGTTCATCCGTA
TGAAACGTAGCCTGGGCCGGCGAACGCCCGGTAAATCGCTCCGTCTCGGC
CTTGTAGGGATGCGAGGTCAATGTTCTAGCGACTATGGCATGTGTTTACA
TGAGCACCACCCCTCCACACACCGTGCCCCCCCCGTGACGAACTCCGTGG
CTGGCATAAAAGCTGGACGTAACGTACAGCGTAAACTCCATCGGCATGAA
GTACGAGCGCATGCTCTTCGGGATGAAAATTTCGGATGCTAATTGCTTGG
CCAAGGCTATCCAGGCAACCCAGACGATGGCTTCGCTAGTGTTGCAGGTG
AGAGTTAAGAAGGCGTTTCGCGTTTGCTGGTTTCCGTCATGGTGGGACGC
AAATTTGCAAGGTCTTTGTGCGTACGCGCGATGCGGCACATGGTTACGCC
CACCTTCTATGGTGGCATGGTTAACCGTCTCCAGCAACAAGGATCTGAAA
TGCCCACCTAGTAGGTGCAGACACGTGGTGGTGGCCTCCTCCATCGGTAG
CGTTAAGCAGCCGAAAGGGGTATGCGAGAGCGGCGACGGTGGCTCCCTGT
GCGTGACCAGCGCCACGCAAACATGCTCGGACGAGGGAGGGGGGGCGGAA
ATCCTACCGTATTTTGTAGCCCGTCCAACAAATTCCGAGTGCCTCATGCT
CTGAAACAAGAAGTGACTCAACGTTAGCGAGTACAGCCCCTCTGGGATAA
GTTCGAACGCCCGCAAGGGCTTGCCACCCCTCGCGATCCTGAACCCCTTC
ACTACGCAGTCCACGGAAGGGTTGCTCAACCAAACGTGTTGGTTCAGGAT
ACCCATGTTTTTGCCGGGAGAGCAACTCTCTGTTTACTGCCCCTTTATAA
ATATGTATCCCCGAGCACCTTGGTCCGCGTGTGCTGCTTCCGAGCAGACG
ATTTGGTCGGGGGCGCGAAATGATTCGTATTTCTCGTGTTCATTCACACA
CACACTCTCTCTCTCGTGTGCCACCGGCCTAGGGGAACCTGATCGACGAC
GACCTCATGCGGATGCTCATGACCGGGCTCATCAGGAACTCCACGATTAC
GTACTTGGACGTGAGCCACAACAAGATCACCAACCACGGTGAGCAGACCC
CTCAGACGCTGCATGCTTAATTTGCCGCGCACCACGGTGCCACATGACTG
GTAGCCACACCACAGGAAGGAATCATCTCAGCTACGCAGCATGTCGTTCG
ATGTTGTGCGCGGGTGTGCGTGCGGGTCGGCTTTGCTCGCCCGTGGGTCT
GTTGCACACCAGATTACACGCGTTCGAAACCCAGCATCTTCCCCACAGCA
CCCACCACACGAGAATCTTAAAAATGACGAGCCTGAGTGACGGCATCGTC
ACCGGCATGTCTCGCTAAAGATGACGTCCCCCCCCCTCGCTTGACTCTTG
GCTTCCAGTATGTTAACTTCCGACCACACTTTTTTGTTCAAGTTTTCAAC
TCTCCGGCAGGGTGATTAACCTCGTGATTCTTGTTTTCCCTTGTTGTGTT
CTTTTCGTGTCGGCCTTGAAAATTCTCGTCGCCCAACCACTTTCTTCTCT
GCGAACAACAACAGGCGCGAGACTTCTCTCCAAATTACTCGGCGAGAACA
GCGTCCTTACCACGCTCAATCTGGCGGACAACCAGGTACGGAAGTAGGGA
GGTACGATGGTCGAACGAATCAGCCCAACCTAGGAGCACCCGTGCCAAAC
ACTTGATTGACCAAGTTTAACCTGTAGTAGTCGAATTAGTCAGCGCTTTT
GCCTTCACGTCTCCGGTAGCAACGGTTAGCAAATACGTCGTCTTCTGCGA
TTCGAGTGGCAGATCCATGCGGAGGGGGGTCGGTATATCGGCCGCGCCCT
TCGGGGAAACACGTCGCTGGTGACCCTCAACCTCCGGCTGAACCGCCTGA
CGGACGAGGGAGGGAGGATGCTCGTAGAGGGACTGCACGACAACCCGACC
CTGGCCTGCCTCAACCTCAGGTGGGCGCGCGCGCGCTCGTGGAGAAGGTC
CTTACCCGGCCTGACGCCCTCTTGGCCGCATCTCGGTGCAATGGTCGTAC
GTCCCGCCTATAGATTGCATGGAGCAGTCAGTCTGACATGTAAATCTGGG
TGGACTAGCTTCCGAACAGCTGTATATCTTCGGCACAAGAAAGCACACCC
CCCCCGGTGCCAGCATTTTGGCTTGGTGCTGGTGTGGGCGGGTGCGGTGT
CTCGTTTCGTTCATCTGAGAGTAGTTGTTTGCTGGATTGGGCTCAGGCTG
ACCAGTGCCAACGAGCCACTTTGGGTACGGTACATGGGTGGCGTGAGAGT
TTCCGTGCATGGTACTGGTGCATAGTTCCGGAATGTTGGGGTGCTCAGTA
TCGCAGAAGCACCCAGAGAAAGCCAATGACGGAAAATATTCTTGTCGGTG
TAGATGCGCGCCCATTTCCTACAGTGCAGCAATAAACTTGCTCGATAGCC
AAACGTCGGGAAACACGTAACGGAGAGACAAATTGACTTGAAATCACAGT
CACGCCGACGTAGTACCACGAACGCAAAGTGTGGTAGACTACACCTTGCC
TGGGCTGCCTAGGCTCGTGGCGTCGCCTAGGAGAGCCTACTGCTGTATGA
CATACCGGGAGGGAAGAAAACGCTTATTTGAGTGGCAACCTGAACGAATC
CGACGACTCGGTGGAGGTTGACACACAGCGACCTTTTGCGGCGCTGCCCC
TTGCTCCCCCCACACCCCCCTCGTGCTCCGGTTCGGTGCCTCTGCTTCTG
CTCATGTTGTTCTTGCTTTCAGCGCGAACTCAATAGCGCGCGAGGCTTGT
TCTTCGCTGAGCATGGTGCTTAGAAAACCGGGGAAGGTGCTGGCAACGCT
GGACCTCAGCTGCAATGAGTTGCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6579:192..7016-

>mRNA_Ecto-sp13_S_contig6579.17409.1 ID=mRNA_Ecto-sp13_S_contig6579.17409.1|Name=mRNA_Ecto-sp13_S_contig6579.17409.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1527bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6579:192..7016- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGTGTAGCCCGTACTCTCAAACGTTTTCTCGATTTTGCAGCACCCACAG
CAGTGACAGTGGTCAGTTTACACCTGCAGCTGAAAAACAGCGAGTCATCT
CCGCTCAACAGCCGGATATGACGACACGGGGCGAGCTTTCTGTCGGCGGC
ACAACAAATGTGCCGTCCCTAGCCGACCAGATCAAGCGCTTCCAGCCGAG
GGTTTTCAGCAACACCGAGAGCGCCTCAAGAGTATTCGACCGCTCAGCCA
AGGACAATCCGGCGCGAGAGGCGCTGACGATCAAGTGCGTCAAGGTCATC
GTCGACAACTTCGAACGGCTGCCAGCGCACGATGCCACCGGTGGGTTCAA
TGTCGGTTACCGCAAGGACGACGGCGAGAACGGCGACTGTCGCCAAGACG
AAACGAAGGACGGCGGCGGCGGCGGCGGCGGCGGCGGTGGAGTTGACGCT
AGCCCTGCCACAGCAACGTGGAGCGCGGCGGAGCGAACAGACGCTGCCAG
GGGCGATGCAGGATTTGGCGGGATGAGCGGGAGAGAGGGGGGAGAGACCA
AGCTGAAGGGAGATGATGAGCTGCCATATCCTCAGCAACAAGAGGGCAAG
GTCATACCCGCGAAGCTTTTGCAGCTGATTAGCGCTGGCTTGAGTACTGA
CTTGGATCCGAAGGTAGGAGCTTTGTACGTGTTTGACGAGAACTACTGGA
AACGGCGATGCGTGGAGAAGCTTGGCTGGCAAAACTGCCAGATCGCCGAG
CACGGGCTGACATGGAAGCAGCTGTTTTTTGAGGCCTACGTGAGCACCCA
GCTGGAGACGTTCGACGCCCAGAAGGAGACGTTCGGCCACCTCCTGGAGT
TCCTTGCGTCGTGTCAGGAGTACGTCTTCACCCTCCGCATCCGACAACTC
TTGGCGCACCCCGACATGCGCGCGGTGTGCGAGGTCCTGCAGAACCTCAC
CATGCTGGACGTAACGTACAGCGTAAACTCCATCGGCATGAAGTACGAGC
GCATGCTCTTCGGGATGAAAATTTCGGATGCTAATTGCTTGGCCAAGGCT
ATCCAGGCAACCCAGACGATGGCTTCGCTAGTGTTGCAGGGGAACCTGAT
CGACGACGACCTCATGCGGATGCTCATGACCGGGCTCATCAGGAACTCCA
CGATTACGTACTTGGACGTGAGCCACAACAAGATCACCAACCACGGCGCG
AGACTTCTCTCCAAATTACTCGGCGAGAACAGCGTCCTTACCACGCTCAA
TCTGGCGGACAACCAGATCCATGCGGAGGGGGGTCGGTATATCGGCCGCG
CCCTTCGGGGAAACACGTCGCTGGTGACCCTCAACCTCCGGCTGAACCGC
CTGACGGACGAGGGAGGGAGGATGCTCGTAGAGGGACTGCACGACAACCC
GACCCTGGCCTGCCTCAACCTCAGCGCGAACTCAATAGCGCGCGAGGCTT
GTTCTTCGCTGAGCATGGTGCTTAGAAAACCGGGGAAGGTGCTGGCAACG
CTGGACCTCAGCTGCAATGAGTTGCAG
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