mRNA_Ecto-sp13_S_contig65740.17402.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig65740.17402.1
Unique NamemRNA_Ecto-sp13_S_contig65740.17402.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig65740.17402.1 vs. uniprot
Match: A0A6H5JY17_9PHAE (SWIM-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY17_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 2.300e-48
Identity = 83/85 (97.65%), Postives = 84/85 (98.82%), Query Frame = 1
Query:    1 MGMVATQRTEGMFGVAKRSGVHKKLYLCGLWEKLQLLYQKMDVEYSRVATRGVGAELPFQTKHLQGIFAPIQEELKRVGASQYCQ 255
            MGMVATQRTEGMFGVAKRSGVHKKL LCGLWEKLQL+YQKMDVEYSRVATRGVGAELPFQTKHLQGIFAPIQEELKRVGASQYCQ
Sbjct:  150 MGMVATQRTEGMFGVAKRSGVHKKLSLCGLWEKLQLMYQKMDVEYSRVATRGVGAELPFQTKHLQGIFAPIQEELKRVGASQYCQ 234          
BLAST of mRNA_Ecto-sp13_S_contig65740.17402.1 vs. uniprot
Match: D8LJK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJK2_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 2.910e-45
Identity = 74/85 (87.06%), Postives = 78/85 (91.76%), Query Frame = 1
Query:    1 MGMVATQRTEGMFGVAKRSGVHKKLYLCGLWEKLQLLYQKMDVEYSRVATRGVGAELPFQTKHLQGIFAPIQEELKRVGASQYCQ 255
            MGMVATQRT  MFGV KRSGVHKKL LCGLWEKLQLLY KMD+EYSRV TRG+GAELPFQTKHLQ IFAPI+EEL+RVGASQYCQ
Sbjct:    1 MGMVATQRT--MFGVTKRSGVHKKLSLCGLWEKLQLLYHKMDIEYSRVGTRGMGAELPFQTKHLQEIFAPIREELERVGASQYCQ 83          
BLAST of mRNA_Ecto-sp13_S_contig65740.17402.1 vs. uniprot
Match: A0A6H5KBY4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBY4_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 3.780e-22
Identity = 47/85 (55.29%), Postives = 63/85 (74.12%), Query Frame = 1
Query:    1 MGMVATQRTEGMFGVAKRSGVHKKLYLCGLWEKLQLLYQKMDVEYSRVATRGVGAELPFQTKHLQGIFAPIQEELKRVGASQYCQ 255
            +GMVATQRTEG+FGVAK SGV KKL LC LW++LQ L + + +E +R+AT  +GA + F   H++  F P+++EL   GASQYCQ
Sbjct:  771 LGMVATQRTEGLFGVAKSSGVEKKLSLCALWDRLQRLSKMIAIETARLATPPLGAGVAFGDIHVENFFRPVKQELLACGASQYCQ 855          
BLAST of mRNA_Ecto-sp13_S_contig65740.17402.1 vs. uniprot
Match: A0A6H5JBV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV0_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 6.830e-22
Identity = 46/85 (54.12%), Postives = 63/85 (74.12%), Query Frame = 1
Query:    1 MGMVATQRTEGMFGVAKRSGVHKKLYLCGLWEKLQLLYQKMDVEYSRVATRGVGAELPFQTKHLQGIFAPIQEELKRVGASQYCQ 255
            +GMVATQRTEG+FGVAKRSGV KKL LC LW++LQ L + + +E +R+ T  +   + F+ KH++  F P+++EL   GASQYCQ
Sbjct:  300 LGMVATQRTEGLFGVAKRSGVEKKLSLCALWDRLQHLSKMIAIETARLETPPITPGVAFRDKHVEEFFQPVKQELLACGASQYCQ 384          
BLAST of mRNA_Ecto-sp13_S_contig65740.17402.1 vs. uniprot
Match: A0A6H5KWM8_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWM8_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 6.890e-22
Identity = 46/85 (54.12%), Postives = 64/85 (75.29%), Query Frame = 1
Query:    1 MGMVATQRTEGMFGVAKRSGVHKKLYLCGLWEKLQLLYQKMDVEYSRVATRGVGAELPFQTKHLQGIFAPIQEELKRVGASQYCQ 255
            +GMVATQRTEG+FGVAKRSGV KKL LC LW++LQ + + + +E +R+AT  +   + F+ KH++  F P+++EL   GASQYCQ
Sbjct:  386 LGMVATQRTEGLFGVAKRSGVEKKLSLCALWDRLQHVSKMIAIETARLATPLITPGVAFRDKHVEEFFQPVKQELLACGASQYCQ 470          
BLAST of mRNA_Ecto-sp13_S_contig65740.17402.1 vs. uniprot
Match: A0A6H5JYU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYU5_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.730e-21
Identity = 48/84 (57.14%), Postives = 59/84 (70.24%), Query Frame = 1
Query:    1 MGMVATQRTEGMFGVAKRSGVHKKLYLCGLWEKLQLLYQKMDVEYSRVATRGVGAELPFQTKHLQGIFAPIQEELKRVGASQYC 252
            +GMVATQRTEGMFGVAK+SG+HK L LC LW++LQ +YQ MD+E+ RVA+  V  EL F TKHL+       E    +G SQ C
Sbjct:   58 LGMVATQRTEGMFGVAKKSGIHKNLSLCALWDRLQHVYQTMDIEHGRVASPAVKLELAFPTKHLE-------EAKDELGGSQSC 134          
BLAST of mRNA_Ecto-sp13_S_contig65740.17402.1 vs. uniprot
Match: A0A6H5JXC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC0_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 4.080e-21
Identity = 46/85 (54.12%), Postives = 63/85 (74.12%), Query Frame = 1
Query:    1 MGMVATQRTEGMFGVAKRSGVHKKLYLCGLWEKLQLLYQKMDVEYSRVATRGVGAELPFQTKHLQGIFAPIQEELKRVGASQYCQ 255
            +GMVATQRTEG+FGVAKRSGV KKL LC LW++LQ L + + +E +R+AT  +   + F+ K ++  F P+++EL   GASQYCQ
Sbjct:  143 LGMVATQRTEGLFGVAKRSGVEKKLSLCALWDRLQHLSKMIAIETARLATPPITPGVAFRDKLVEEFFQPVKQELLACGASQYCQ 227          
BLAST of mRNA_Ecto-sp13_S_contig65740.17402.1 vs. uniprot
Match: A0A6H5KC96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC96_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 5.460e-18
Identity = 42/84 (50.00%), Postives = 57/84 (67.86%), Query Frame = 1
Query:    1 MGMVATQRTEGMFGVAKRSGVHKKLYLCGLWEKLQLLYQKMDVEYSRVATRGVGAELPFQTKHLQGIFAPIQEELKRVGASQYC 252
            +GM ATQR EG+F V K  GV K+L LC LW+ L+ +   + +E   +AT  + A+LPFQ KH++  F PI E L+RVGASQ+C
Sbjct:  164 LGMAATQRVEGLFSVPKCMGVIKQLSLCALWDVLRRVDTSLAIE---LATPAIAAQLPFQEKHMENFFTPINEGLQRVGASQFC 244          
BLAST of mRNA_Ecto-sp13_S_contig65740.17402.1 vs. uniprot
Match: A0A6H5JIR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR6_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 2.800e-17
Identity = 41/83 (49.40%), Postives = 59/83 (71.08%), Query Frame = 1
Query:    1 MGMVATQRTEGMFGVAKRSGVHKKLYLCGLWEKLQLLYQKMDVEYSRVATRGVGAELPFQTKHLQGIFAPIQEELKRVGASQY 249
            +G+VATQRTEG+F VAKRSGV  KL LC LW++LQ L + + +E +R AT  +GA + F+  H++  F  +++EL   GASQ+
Sbjct:  330 LGVVATQRTEGLFEVAKRSGVENKLSLCALWDRLQRLSKMIAIETARFATPPLGAGVAFRDIHVENFFRRVKQELPARGASQF 412          
BLAST of mRNA_Ecto-sp13_S_contig65740.17402.1 vs. uniprot
Match: A0A6H5JZB4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZB4_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 4.900e-14
Identity = 32/45 (71.11%), Postives = 41/45 (91.11%), Query Frame = 1
Query:    1 MGMVATQRTEGMFGVAKRSGVHKKLYLCGLWEKLQLLYQKMDVEY 135
            +GMVAT+RTEGMFGVAK+SG+HKKL LC LW++LQ +YQ MD+E+
Sbjct:  630 LGMVATKRTEGMFGVAKKSGIHKKLSLCALWDRLQHVYQTMDIEH 674          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig65740.17402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5JY17_9PHAE2.300e-4897.65SWIM-type domain-containing protein n=3 Tax=Ectoca... [more]
D8LJK2_ECTSI2.910e-4587.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KBY4_9PHAE3.780e-2255.29SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JBV0_9PHAE6.830e-2254.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWM8_9PHAE6.890e-2254.12MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JYU5_9PHAE1.730e-2157.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXC0_9PHAE4.080e-2154.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC96_9PHAE5.460e-1850.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIR6_9PHAE2.800e-1749.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZB4_9PHAE4.900e-1471.11SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig65740contigEcto-sp13_S_contig65740:70..631 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size255
Hectar predicted targeting categoryother localisation
Exons2
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463905.7158566-CDS-Ecto-sp13_S_contig65740:69..1841681463905.7158566-CDS-Ecto-sp13_S_contig65740:69..184Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig65740 70..184 -
1681463905.7294247-CDS-Ecto-sp13_S_contig65740:491..6311681463905.7294247-CDS-Ecto-sp13_S_contig65740:491..631Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig65740 492..631 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig65740.17402.1prot_Ecto-sp13_S_contig65740.17402.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig65740 70..631 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig65740.17402.1

>prot_Ecto-sp13_S_contig65740.17402.1 ID=prot_Ecto-sp13_S_contig65740.17402.1|Name=mRNA_Ecto-sp13_S_contig65740.17402.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
MGMVATQRTEGMFGVAKRSGVHKKLYLCGLWEKLQLLYQKMDVEYSRVAT
RGVGAELPFQTKHLQGIFAPIQEELKRVGASQYCQ
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mRNA from alignment at Ecto-sp13_S_contig65740:70..631-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig65740.17402.1 ID=mRNA_Ecto-sp13_S_contig65740.17402.1|Name=mRNA_Ecto-sp13_S_contig65740.17402.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=562bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65740:70..631- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTATGGTTGCCACCCAGCGCACCGAGGGTATGTTCGGGGTGGCGAA GAGATCCGGAGTTCACAAGAAGCTGTACCTGTGCGGTCTGTGGGAGAAGC TCCAACTTCTGTACCAGAAGATGGACGTCGAGTACAGCAGGTGAGTTCCA CTAAGTTATAGCCTTGGAGCGGCGCCATCGCGTTTGGTACCTGAACCTAG ACGGTGAACTAGCCGCGCGTATTCTGCCCCGGATGTTGTGCCATCAACGA AAACTCTGCGACTCTTCTGAACCTCAGTCATCTCAGAGGCATTGGGTAAA GTCTCAAAAATGGGCTTGTGTCCACCCTATCCACTGACGACAACGTTGGC CGCCACCCATGAGCATCGTTTCTGTTGTTGCCCCGTAGCGTAATGTCAAA CGGTTATAACTCCCTTATAAACACTCCGTCCGACCTCGTTCGCTCAGGGT CGCAACGAGAGGCGTGGGAGCGGAGTTGCCATTCCAGACGAAGCATCTGC AGGGGATCTTCGCCCCGATCCAGGAAGAGCTCAAACGGGTTGGCGCAAGC CAGTACTGCCAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig65740:70..631-

>mRNA_Ecto-sp13_S_contig65740.17402.1 ID=mRNA_Ecto-sp13_S_contig65740.17402.1|Name=mRNA_Ecto-sp13_S_contig65740.17402.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65740:70..631- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTATGGTTGCCACCCAGCGCACCGAGGGTATGTTCGGGGTGGCGAA
GAGATCCGGAGTTCACAAGAAGCTGTACCTGTGCGGTCTGTGGGAGAAGC
TCCAACTTCTGTACCAGAAGATGGACGTCGAGTACAGCAGGGTCGCAACG
AGAGGCGTGGGAGCGGAGTTGCCATTCCAGACGAAGCATCTGCAGGGGAT
CTTCGCCCCGATCCAGGAAGAGCTCAAACGGGTTGGCGCAAGCCAGTACT
GCCAA
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