prot_Ecto-sp13_S_contig6566.17397.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6566.17397.1
Unique Nameprot_Ecto-sp13_S_contig6566.17397.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length541
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6566.17397.1 vs. uniprot
Match: D8LKA2_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKA2_ECTSI)

HSP 1 Score: 596 bits (1536), Expect = 1.090e-207
Identity = 469/503 (93.24%), Postives = 474/503 (94.23%), Query Frame = 0 
Query:   40 ASTMCILSTRKFGPSEAAAFSAALSGNTSLTELLASGHPLEVAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGLLVLDLEYKSITSGEGLRTLLETHPTLADLRLGRNQLGEAGMKSLSAGLSLSSTLLRLDLSGNQLNAAAAEALGLALCTHRPAGTSGNQAGTSAVGXXXXXXXXXXXXXXXXXXXXXXLEFLDVSRNPLGDEGGAALFRALATSPTLTGLVLAEAKLGPLAAAAIAEAFVPPPASPLPGGGGPSGPAEPDFGEMTLLPXXXXXAV--NEGGLQKLQALDVSKNELGTGGGVEVAGALSRGGAPRLETLSMAYNDVGDDGAAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLREAKLFHNACKDEGVPLVLDALRAGGTLQTLDLGANGLTGAXXXXXXXXXXXXXXXXXXXXXXXSNDERAEEAVRSSQGSNPALDIAFRRGGEAMEGSGAPPGVGIGGGTAGGPGAAAAWQTQ 540
            ASTMCILSTRKFGPSEAAAFSAALSGNTSLTELLASGHPLEVAG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGLLVLDLEYKSI SGEGLRTLLETHPTLADLRLGRNQLGEAGMKSLSAGLSL+STLLRLD+SGNQLNAAAAEALG ALCTHRPA   GNQ GTSAVG   XXXXXXXXXXXXXXX    LEFLDVSRNPLGDEGGAALFRALATSPTLTGLVLAEAKLGPLAAAA+AEA VPPPASPLPGGGGPSGPAEPD GEMT LPXXXXX    N GGLQKLQALDVSKNELGTGGG EVAGALSRGGAPRLETLSMAYNDVGDDGAAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLREAKLFHNACKDEGVPLVL+AL AGGTLQTLDLGANGL   XXXXXXXXXXXXXXXXXXXXXXXSNDERAEEAVR SQGSNPALDIAFRRGGEAMEGSGAPPGVGIGGGTAGGPGAAA+WQTQ
Sbjct:   22 ASTMCILSTRKFGPSEAAAFSAALSGNTSLTELLASGHPLEVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGLLVLDLEYKSIASGEGLRTLLETHPTLADLRLGRNQLGEAGMKSLSAGLSLNSTLLRLDVSGNQLNAAAAEALGRALCTHRPAAI-GNQTGTSAVGGSDXXXXXXXXXXXXXXX----LEFLDVSRNPLGDEGGAALFRALATSPTLTGLVLAEAKLGPLAAAALAEALVPPPASPLPGGGGPSGPAEPDSGEMTPLPXXXXXXXXXNGGGLQKLQALDVSKNELGTGGGAEVAGALSRGGAPRLETLSMAYNDVGDDGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLREAKLFHNACKDEGVPLVLEALLAGGTLQTLDLGANGLXXXXXXXXXXXXXXXXXXXXXXXXXXSNDERAEEAVRRSQGSNPALDIAFRRGGEAMEGSGAPPGVGIGGGTAGGPGAAASWQTQ 519
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BLAST of mRNA_Ecto-sp13_S_contig6566.17397.1 vs. uniprot
Match: A0A835YR55_9STRA (Leucine rich repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR55_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.320e-11
Identity = 88/184 (47.83%), Postives = 109/184 (59.24%), Query Frame = 0 
Query:   41 STMCILSTRKFGPSEAAAFSAALSGNTSLTELLASGHPLEVAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXH-GLLVLDLEYKSITSGEGLRTLLETHPTLADLRLGRNQLGEAGMKSLSAGL--------------------------SLSSTLLRLDLSGNQLNAAAAEAL 197
            +++ IL  R+FG +EA  F+AALS N++LTEL ASGH +   GA  XXXXXXXXXXXXXXXXXXXXXXXXX           + GL+ LDLEYKS+T G+ +  LL+ H  L DLRLGRN++G  G+ +L  GL                          +L STL  LDLSGN L  +A   L
Sbjct:   23 TSLVILRNRRFGVTEATQFAAALSSNSTLTELFASGHAVGEEGAAAXXXXXXXXXXXXXXXXXXXXXXXXXVTALVHGGLHKNTGLVKLDLEYKSVTRGDHIGHLLQHHTALQDLRLGRNRIGNDGLIALCQGLCASTXXXXXXXXXXXXXXXXXXXXTQTLPSTLTGLDLSGNALCGSAGHTL 206
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6566.17397.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKA2_ECTSI1.090e-20793.24Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
A0A835YR55_9STRA1.320e-1147.83Leucine rich repeat protein n=1 Tax=Tribonema minu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 176..203
e-value: 1.6
score: 15.6
coord: 334..361
e-value: 1.4
score: 16.1
coord: 442..469
e-value: 1.6
score: 15.8
coord: 94..121
e-value: 7.5E-5
score: 32.1
coord: 268..295
e-value: 190.0
score: 1.0
coord: 66..93
e-value: 40.0
score: 5.8
coord: 364..389
e-value: 5.5
score: 11.9
coord: 148..175
e-value: 1.3
score: 16.3
coord: 390..419
e-value: 4.7
score: 12.4
coord: 240..267
e-value: 5.5
score: 11.9
NoneNo IPR availablePANTHERPTHR24113:SF5RAN GTPASE-ACTIVATING PROTEINcoord: 336..487
NoneNo IPR availablePANTHERPTHR24113FAMILY NOT NAMEDcoord: 45..201
coord: 241..408
NoneNo IPR availablePANTHERPTHR24113:SF5RAN GTPASE-ACTIVATING PROTEINcoord: 45..201
NoneNo IPR availablePANTHERPTHR24113:SF5RAN GTPASE-ACTIVATING PROTEINcoord: 241..408
NoneNo IPR availablePANTHERPTHR24113FAMILY NOT NAMEDcoord: 336..487
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 333..482
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 41..384
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 322..503
e-value: 1.6E-27
score: 97.8
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 40..136
e-value: 7.7E-20
score: 72.7
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 176..197
e-value: 0.03
score: 14.4
coord: 94..115
e-value: 1.9E-4
score: 21.2
coord: 365..385
e-value: 0.0031
score: 17.4
coord: 335..354
e-value: 0.27
score: 11.4
coord: 243..261
e-value: 0.0059
score: 16.6
coord: 393..409
e-value: 0.89
score: 9.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6566contigEcto-sp13_S_contig6566:506..3846 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6566.17397.1mRNA_Ecto-sp13_S_contig6566.17397.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6566 166..4231 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6566.17397.1 ID=prot_Ecto-sp13_S_contig6566.17397.1|Name=mRNA_Ecto-sp13_S_contig6566.17397.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=541bp
MKPQHAPYTTSSHTTSSHSSHQMRHANTVPFPPCRHPLQASTMCILSTRK
FGPSEAAAFSAALSGNTSLTELLASGHPLEVAGASAFGQALSRNTTLRSL
CVGDNDFGDEGVIALVEGLKRNHGLLVLDLEYKSITSGEGLRTLLETHPT
LADLRLGRNQLGEAGMKSLSAGLSLSSTLLRLDLSGNQLNAAAAEALGLA
LCTHRPAGTSGNQAGTSAVGGGDGGGGGGGGGGGGGSTPPPPLEFLDVSR
NPLGDEGGAALFRALATSPTLTGLVLAEAKLGPLAAAAIAEAFVPPPASP
LPGGGGPSGPAEPDFGEMTLLPPPPPPAVNEGGLQKLQALDVSKNELGTG
GGVEVAGALSRGGAPRLETLSMAYNDVGDDGAAALGKAAGPRLAVLDLSG
NALGGAGIGAVLSAPGLREAKLFHNACKDEGVPLVLDALRAGGTLQTLDL
GANGLTGAGLEILLPGLAACSSLQTLEVGANSNDERAEEAVRSSQGSNPA
LDIAFRRGGEAMEGSGAPPGVGIGGGTAGGPGAAAAWQTQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt