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Homology
BLAST of mRNA_Ecto-sp13_S_contig6566.17397.1 vs. uniprot
Match: D8LKA2_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKA2_ECTSI) HSP 1 Score: 597 bits (1540), Expect = 1.260e-204 Identity = 469/503 (93.24%), Postives = 474/503 (94.23%), Query Frame = 2
Query: 458 ASTMCILSTRKFGPSEAAAFSAALSGNTSLTELLASGHPLEVAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGLLVLDLEYKSITSGEGLRTLLETHPTLADLRLGRNQLGEAGMKSLSAGLSLSSTLLRLDLSGNQLNAAAAEALGLALCTHRPAGTSGNQAGTSAVGXXXXXXXXXXXXXXXXXXXXXXLEFLDVSRNPLGDEGGAALFRALATSPTLTGLVLAEAKLGPLAAAAIAEAFVPPPASPLPGGGGPSGPAEPDFGEMTLLPXXXXXAV--NEGGLQKLQALDVSKNELGTGGGVEVAGALSRGGAPRLETLSMAYNDVGDDGAAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLREAKLFHNACKDEGVPLVLDALRAGGTLQTLDLGANGLTGAXXXXXXXXXXXXXXXXXXXXXXXSNDERAEEAVRSSQGSNPALDIAFRRGGEAMEGSGAPPGVGIGGGTAGGPGAAAAWQTQ 1960
ASTMCILSTRKFGPSEAAAFSAALSGNTSLTELLASGHPLEVAG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGLLVLDLEYKSI SGEGLRTLLETHPTLADLRLGRNQLGEAGMKSLSAGLSL+STLLRLD+SGNQLNAAAAEALG ALCTHRPA GNQ GTSAVG XXXXXXXXXXXXXXX LEFLDVSRNPLGDEGGAALFRALATSPTLTGLVLAEAKLGPLAAAA+AEA VPPPASPLPGGGGPSGPAEPD GEMT LPXXXXX N GGLQKLQALDVSKNELGTGGG EVAGALSRGGAPRLETLSMAYNDVGDDGAAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLREAKLFHNACKDEGVPLVL+AL AGGTLQTLDLGANGL XXXXXXXXXXXXXXXXXXXXXXXSNDERAEEAVR SQGSNPALDIAFRRGGEAMEGSGAPPGVGIGGGTAGGPGAAA+WQTQ
Sbjct: 22 ASTMCILSTRKFGPSEAAAFSAALSGNTSLTELLASGHPLEVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGLLVLDLEYKSIASGEGLRTLLETHPTLADLRLGRNQLGEAGMKSLSAGLSLNSTLLRLDVSGNQLNAAAAEALGRALCTHRPAAI-GNQTGTSAVGGSDXXXXXXXXXXXXXXX----LEFLDVSRNPLGDEGGAALFRALATSPTLTGLVLAEAKLGPLAAAALAEALVPPPASPLPGGGGPSGPAEPDSGEMTPLPXXXXXXXXXNGGGLQKLQALDVSKNELGTGGGAEVAGALSRGGAPRLETLSMAYNDVGDDGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLREAKLFHNACKDEGVPLVLEALLAGGTLQTLDLGANGLXXXXXXXXXXXXXXXXXXXXXXXXXXSNDERAEEAVRRSQGSNPALDIAFRRGGEAMEGSGAPPGVGIGGGTAGGPGAAASWQTQ 519
BLAST of mRNA_Ecto-sp13_S_contig6566.17397.1 vs. uniprot
Match: A0A835YR55_9STRA (Leucine rich repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR55_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 2.520e-11 Identity = 88/184 (47.83%), Postives = 109/184 (59.24%), Query Frame = 2
Query: 461 STMCILSTRKFGPSEAAAFSAALSGNTSLTELLASGHPLEVAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXH-GLLVLDLEYKSITSGEGLRTLLETHPTLADLRLGRNQLGEAGMKSLSAGL--------------------------SLSSTLLRLDLSGNQLNAAAAEAL 931
+++ IL R+FG +EA F+AALS N++LTEL ASGH + GA XXXXXXXXXXXXXXXXXXXXXXXXX + GL+ LDLEYKS+T G+ + LL+ H L DLRLGRN++G G+ +L GL +L STL LDLSGN L +A L
Sbjct: 23 TSLVILRNRRFGVTEATQFAAALSSNSTLTELFASGHAVGEEGAAAXXXXXXXXXXXXXXXXXXXXXXXXXVTALVHGGLHKNTGLVKLDLEYKSVTRGDHIGHLLQHHTALQDLRLGRNRIGNDGLIALCQGLCASTXXXXXXXXXXXXXXXXXXXXTQTLPSTLTGLDLSGNALCGSAGHTL 206
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Stop | 1 |
| Start | 1 |
| Seed ortholog score | 604.0 |
| Seed ortholog evalue | 7e-170 |
| Seed eggNOG ortholog | 2880.D8LKA2 |
| Model size | 2348 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| EggNOG free text desc. | interleukin-8 biosynthetic process |
| EggNOG OGs | KOG4308@1,KOG4308@2759 |
| Ec32 ortholog description | Hypothetical leucine rich repeat protein |
| Ec32 ortholog | Ec-01_009510.1 |
| Cds size | 1623 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681463905.2075174-UTR-Ecto-sp13_S_contig6566:165..505 | 1681463905.2075174-UTR-Ecto-sp13_S_contig6566:165..505 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig6566 166..505 + |
| 1681463905.278756-UTR-Ecto-sp13_S_contig6566:3846..4231 | 1681463905.278756-UTR-Ecto-sp13_S_contig6566:3846..4231 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig6566 3847..4231 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681463905.2220027-CDS-Ecto-sp13_S_contig6566:505..835 | 1681463905.2220027-CDS-Ecto-sp13_S_contig6566:505..835 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig6566 506..835 + |
| 1681463905.233075-CDS-Ecto-sp13_S_contig6566:1115..1241 | 1681463905.233075-CDS-Ecto-sp13_S_contig6566:1115..1241 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig6566 1116..1241 + |
| 1681463905.2445233-CDS-Ecto-sp13_S_contig6566:2055..2890 | 1681463905.2445233-CDS-Ecto-sp13_S_contig6566:2055..2890 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig6566 2056..2890 + |
| 1681463905.25375-CDS-Ecto-sp13_S_contig6566:3198..3338 | 1681463905.25375-CDS-Ecto-sp13_S_contig6566:3198..3338 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig6566 3199..3338 + |
| 1681463905.26912-CDS-Ecto-sp13_S_contig6566:3654..3846 | 1681463905.26912-CDS-Ecto-sp13_S_contig6566:3654..3846 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig6566 3655..3846 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6566.17397.1 >prot_Ecto-sp13_S_contig6566.17397.1 ID=prot_Ecto-sp13_S_contig6566.17397.1|Name=mRNA_Ecto-sp13_S_contig6566.17397.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=541bp
MKPQHAPYTTSSHTTSSHSSHQMRHANTVPFPPCRHPLQASTMCILSTRK FGPSEAAAFSAALSGNTSLTELLASGHPLEVAGASAFGQALSRNTTLRSL CVGDNDFGDEGVIALVEGLKRNHGLLVLDLEYKSITSGEGLRTLLETHPT LADLRLGRNQLGEAGMKSLSAGLSLSSTLLRLDLSGNQLNAAAAEALGLA LCTHRPAGTSGNQAGTSAVGGGDGGGGGGGGGGGGGSTPPPPLEFLDVSR NPLGDEGGAALFRALATSPTLTGLVLAEAKLGPLAAAAIAEAFVPPPASP LPGGGGPSGPAEPDFGEMTLLPPPPPPAVNEGGLQKLQALDVSKNELGTG GGVEVAGALSRGGAPRLETLSMAYNDVGDDGAAALGKAAGPRLAVLDLSG NALGGAGIGAVLSAPGLREAKLFHNACKDEGVPLVLDALRAGGTLQTLDL GANGLTGAGLEILLPGLAACSSLQTLEVGANSNDERAEEAVRSSQGSNPA LDIAFRRGGEAMEGSGAPPGVGIGGGTAGGPGAAAAWQTQ* back to topmRNA from alignment at Ecto-sp13_S_contig6566:166..4231+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig6566.17397.1 ID=mRNA_Ecto-sp13_S_contig6566.17397.1|Name=mRNA_Ecto-sp13_S_contig6566.17397.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4066bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6566:166..4231+ (Ectocarpus species13 EcNAP12_S_4_19m) AGCGGATCTCGTCCTATTGTGATTAGCACTTCTGCTTTGTGGAATACGGA
TTTCCAATACGGCGCTGGTCACACGCCCAGACGTCTATCGTCTTACCGCG
TTGCGCACGTACCTTGTGCACGTAGACTAGTGCTCGTGAATTTTGATCCC
CCGATGTCCCACACACACGTAGTTGATCGCATGTAAGAAAATGTCCGTGT
GGCCCAAGCCTTCACAGCAGAACACAGCGGCAGCGGCAGTAGCCAACAAC
ACCGGGAGTACAGGTTACGGGTAGCATGCACCGCTTGAAGGACTGCAGTA
ACATTCAGGGGTGCGGACGACCCGAACACCCTTTGCTCATATGAAACCGC
AACATGCACCGTACACTACGTCGTCGCACACTACGTCGTCGCACTCCTCT
CATCAGATGCGACACGCGAACACCGTCCCCTTTCCTCCGTGCCGACACCC
ACTCCAGGCAAGTACCATGTGCATCCTGAGCACGAGAAAGTTCGGCCCGT
CAGAAGCGGCGGCCTTCTCGGCCGCCCTGTCCGGCAACACCTCCCTCACG
GAGCTCCTCGCTTCGGGGCACCCCTTGGAAGTCGCCGGGGCGTCGGCCTT
TGGCCAAGCCTTGTCGAGGAATACCACGCTTCGATCGCTCTGCGTGGGGG
ACAACGATTTCGGCGACGAGGTTAGGGTGGTGTCACAAAAGAGTAGGGTC
CCGGAGTAAAAGAGAGGTCAGGGTTTCTGTGGGATGGCATCGTGTTTGCG
ATCTGCTTGTTGTGTGCCATGCCCCTGCCGTTCGAATCATCTGCCGGTGT
TTAAGTCTTTCTGGTTCAACGAAGCAACTGAAGAGAGTTTTGTTTTCGCT
GAGACGGAACGGCGCACGTTTTGCTCCTTGCACACGCTGCGTAACGTTTT
CGACATATTCCGTGAGATGACGGCTGGTCGCTCAAACGGTTTCATCGCAG
GGCGTGATCGCGCTGGTGGAAGGCTTGAAGCGGAACCACGGGCTCCTCGT
CCTCGATCTCGAGTACAAGTCCATTACCTCCGGAGAGGGGCTGCGCACCC
TTCTCGAGACACACCCTACGTTAGCGGTGAGGACCTACAGAATTAAGGGA
GTGGTCAGAGGGGGGCTTTGCCGCCTGGTTGTTTGCAAGCTCTACCGCTT
TTCATATATTCACGAAAGGATTCAGCTGTTACCCCAAAACACCGGTCGAC
TTCCTTTGGCCGCTGCCCAATTGTGCTCCTGCAGCACGGAAGATTCATGT
GCCTCCACATTGCTGGCGACGGCAAACGTCGATCGGCGCCTACGCACCAG
TAGTACCGTAGGCAGGGAGACGTTGCAAAACATTGGTCCGACGCGTCTTC
CGTGTCCCCGCCAAAATCATTCCTCCCACTTTTTTTTTTACTCACAGAAA
TGTCTTTTTGTGTTGATGGAGGAAGGCGATTAGTCGTGGCTTTCGTGCAT
GGTACCTCATGGTAGTGAAATCAGGGATTCTATTGACTTTCGCAGCAGTT
ATATGTTGTTGTATGTTGAGCTGCAGCCCTGGCCGTTACCCCCACAAGGG
CTGCTGTGCCTCTGCTAACTCTTTGAGTAGAGGGTCGAGCACACATTCTG
GAGGCCGATGACGCCACATAGCTCACTTTTCATCAAATTGTTGCCGTGCG
GGGTTTTTGTTTCTAGCGGTGAAAAAAAAGTGAGTCGTCTCCTCTTGAAC
AAATGAATGCAGCCCACCCCCGTACACACGGTCCTCGTTGCCGTTTTCGT
TTTTGCCACTGGTACGACATTGTCGTGCGCACCGCCTTCGTACGCGCATT
TTCCACATCTTTGCTCGCAGATGCCTAAGAAGAGGCACGGGGCGCGTCCC
GTACCACTTTGTTGTCCCGAATTAAACCCGATAAACGCAGGACCTAAGGC
TAGGACGCAACCAACTGGGTGAGGCCGGGATGAAGTCCCTGTCGGCCGGC
CTCTCCCTGAGCTCCACCCTCCTCCGTCTCGACCTCTCTGGCAACCAGCT
CAACGCCGCGGCCGCGGAAGCTCTCGGCCTCGCTCTATGCACCCATCGCC
CGGCCGGAACAAGCGGAAACCAGGCCGGAACAAGCGCCGTTGGCGGGGGC
GACGGCGGGGGCGGCGGCGGGGGCGGCGGCGGGGGCGGCGGTTCCACCCC
CCCCCCTCCCCTTGAGTTCCTGGATGTTTCTAGGAACCCCCTCGGCGACG
AGGGTGGCGCCGCGCTCTTCCGGGCCCTGGCGACTTCGCCGACGCTCACG
GGTCTAGTTCTGGCGGAGGCGAAGCTCGGACCCCTGGCCGCGGCCGCCAT
CGCCGAGGCTTTTGTTCCTCCTCCTGCTTCCCCTCTGCCGGGAGGTGGCG
GGCCGTCAGGCCCCGCAGAGCCAGATTTCGGGGAAATGACTCTGTTGCCA
CCACCACCGCCGCCGGCGGTGAACGAGGGAGGCCTGCAGAAGCTCCAAGC
CCTCGACGTCTCGAAGAACGAGCTCGGGACGGGGGGGGGCGTAGAGGTCG
CGGGTGCACTCTCCCGCGGCGGGGCCCCCCGCCTTGAAACGCTGTCGATG
GCTTACAACGACGTCGGGGACGACGGGGCGGCGGCACTCGGCAAGGCGGC
GGGGCCGCGGCTGGCGGTGCTGGATCTGAGCGGGAACGCTCTTGGCGGGG
CCGGGATCGGGGCGGTGTTATCGGCTCCAGGCCTGCGGGAGGCAAAGCTA
TTCCACAACGCCTGCAAGGATGAAGGTACATAAGAGTAGATGTGAACGGA
AACGTGAGAGTAGGACGCCAACCGTGCCAGGGAATGTAGGCGCTCTTGTT
GGATATGCGTCATATGTATTTGTACTCGCCCCATGAGCTCTGCGTAGTTA
GACTGTTGTATACATTCCGACAGTGACTGTGCTAGCGTGAAGTGTTGTTG
CGTCGTTGATTGTTCTCATGCCTTAGATGCATGTAATTGTCTGCTACAAA
AGTGCGTGGATGTGTTTTTTCGTGTTCGGTGCTACAGAAAGTATCATCCT
TGTAACCGGCTGAAATCACACGCGGCGTGACAGGGGTTCCGCTGGTGTTG
GATGCATTGCGAGCCGGCGGCACGTTGCAGACGCTAGACCTCGGCGCCAA
CGGCCTCACCGGTGCCGGATTGGAGATCCTTCTCCCTGGGCTGGCAGCCT
GCAGCTCACTGCAAACCTTGGAGGTGACTTTGCATTTCCGCTGTGCACGT
AGCAGTACACATAAAAGAATACTCCCCCATATTCTGACGCGATCGATGCT
GATGCACGCTGTTCAAGTGGACCCGTTTTTCAACAGGAATCCTCACAGAG
GCATCGTCATTTTAACGGGGATCTGCCTGAAGAGTGAAAACGGCATCGAG
TACCGGAACCGTGTCGGCACGAAAGACTCCTCGTGTTTGTCTCTGTTTGG
TCTCCGCCCCTTCCGGTGTACTCTAACGAACGTTTTCGGGTGTGCTGCTG
CTGTACGTGCACAATGCGACGTATGACAACGTCATCCAGGTTGGTGCGAA
CTCGAACGACGAAAGGGCAGAAGAAGCGGTTCGAAGTTCTCAGGGCAGCA
ACCCGGCCCTCGACATTGCCTTCAGGAGGGGAGGGGAGGCCATGGAAGGC
TCGGGGGCCCCGCCCGGCGTTGGCATCGGTGGGGGTACTGCCGGTGGCCC
GGGGGCGGCGGCGGCATGGCAGACGCAGTAGCGGCTGATAGACCGACTCA
TTAATTCCGATGGTCTTTTTCGTGGATTCATGGCGTTGTGTTTTGCCTGT
TGCTTCAGAGCGTGTAGGAATGATTGGAATATCACGTACTGCCTCAACCC
CCGCAGCGAGCTAGAGGCTGTTGAAGACTACGGAGTCGGTGATTATCGAT
GTCCTCCACTTGCTTGCACATTTTTGGACACCGCACGCATTGATACCTGT
GGGTGCTGCTCCAATTTCTTGAACTCCAACAACATACGGTAGTCAAAACG
GGGAGAGTCAACAAAGTGAGGACCGTTTTCCGTTTTCTTCGAAGTTGTGA
GGATGAAGTGGCCTCCAACGCTAAGTCATTTGGTTTTTCCTCTTGAGCGA
AGGAATGCACTCGAGG back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig6566:166..4231+ >mRNA_Ecto-sp13_S_contig6566.17397.1 ID=mRNA_Ecto-sp13_S_contig6566.17397.1|Name=mRNA_Ecto-sp13_S_contig6566.17397.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1623bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6566:166..4231+ (Ectocarpus species13 EcNAP12_S_4_19m) ATGAAACCGCAACATGCACCGTACACTACGTCGTCGCACACTACGTCGTC GCACTCCTCTCATCAGATGCGACACGCGAACACCGTCCCCTTTCCTCCGT GCCGACACCCACTCCAGGCAAGTACCATGTGCATCCTGAGCACGAGAAAG TTCGGCCCGTCAGAAGCGGCGGCCTTCTCGGCCGCCCTGTCCGGCAACAC CTCCCTCACGGAGCTCCTCGCTTCGGGGCACCCCTTGGAAGTCGCCGGGG CGTCGGCCTTTGGCCAAGCCTTGTCGAGGAATACCACGCTTCGATCGCTC TGCGTGGGGGACAACGATTTCGGCGACGAGGGCGTGATCGCGCTGGTGGA AGGCTTGAAGCGGAACCACGGGCTCCTCGTCCTCGATCTCGAGTACAAGT CCATTACCTCCGGAGAGGGGCTGCGCACCCTTCTCGAGACACACCCTACG TTAGCGGACCTAAGGCTAGGACGCAACCAACTGGGTGAGGCCGGGATGAA GTCCCTGTCGGCCGGCCTCTCCCTGAGCTCCACCCTCCTCCGTCTCGACC TCTCTGGCAACCAGCTCAACGCCGCGGCCGCGGAAGCTCTCGGCCTCGCT CTATGCACCCATCGCCCGGCCGGAACAAGCGGAAACCAGGCCGGAACAAG CGCCGTTGGCGGGGGCGACGGCGGGGGCGGCGGCGGGGGCGGCGGCGGGG GCGGCGGTTCCACCCCCCCCCCTCCCCTTGAGTTCCTGGATGTTTCTAGG AACCCCCTCGGCGACGAGGGTGGCGCCGCGCTCTTCCGGGCCCTGGCGAC TTCGCCGACGCTCACGGGTCTAGTTCTGGCGGAGGCGAAGCTCGGACCCC TGGCCGCGGCCGCCATCGCCGAGGCTTTTGTTCCTCCTCCTGCTTCCCCT CTGCCGGGAGGTGGCGGGCCGTCAGGCCCCGCAGAGCCAGATTTCGGGGA AATGACTCTGTTGCCACCACCACCGCCGCCGGCGGTGAACGAGGGAGGCC TGCAGAAGCTCCAAGCCCTCGACGTCTCGAAGAACGAGCTCGGGACGGGG GGGGGCGTAGAGGTCGCGGGTGCACTCTCCCGCGGCGGGGCCCCCCGCCT TGAAACGCTGTCGATGGCTTACAACGACGTCGGGGACGACGGGGCGGCGG CACTCGGCAAGGCGGCGGGGCCGCGGCTGGCGGTGCTGGATCTGAGCGGG AACGCTCTTGGCGGGGCCGGGATCGGGGCGGTGTTATCGGCTCCAGGCCT GCGGGAGGCAAAGCTATTCCACAACGCCTGCAAGGATGAAGGGGTTCCGC TGGTGTTGGATGCATTGCGAGCCGGCGGCACGTTGCAGACGCTAGACCTC GGCGCCAACGGCCTCACCGGTGCCGGATTGGAGATCCTTCTCCCTGGGCT GGCAGCCTGCAGCTCACTGCAAACCTTGGAGGTTGGTGCGAACTCGAACG ACGAAAGGGCAGAAGAAGCGGTTCGAAGTTCTCAGGGCAGCAACCCGGCC CTCGACATTGCCTTCAGGAGGGGAGGGGAGGCCATGGAAGGCTCGGGGGC CCCGCCCGGCGTTGGCATCGGTGGGGGTACTGCCGGTGGCCCGGGGGCGG CGGCGGCATGGCAGACGCAGTAG back to top
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