mRNA_Ecto-sp13_S_contig65582.17385.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig65582.17385.1
Unique NamemRNA_Ecto-sp13_S_contig65582.17385.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig65582.17385.1 vs. uniprot
Match: A0A6H5L954_9PHAE (UVR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L954_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 4.180e-25
Identity = 65/78 (83.33%), Postives = 68/78 (87.18%), Query Frame = -3 
Query:    3 MNTPMRARRRGGRRVIGLCRCVALASVAARTQALVTCGSTATAWSPSCSSSGRSTIXXXXXXXAVMRDPSSHGRVGRT 236
            MNTPMRARRRGGRRV G+CRCVALA+V ARTQAL+TCGSTATAWSPSCS S RS I  XXXXXAVM DPS HGRV RT
Sbjct:    1 MNTPMRARRRGGRRVAGVCRCVALAAVTARTQALLTCGSTATAWSPSCSGSERSAITTXXXXXAVMHDPSPHGRVRRT 78
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig65582.17385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L954_9PHAE4.180e-2583.33UVR domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig65582contigEcto-sp13_S_contig65582:48..621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size574
Hectar predicted targeting categorysignal peptide
Exons1
Cds size381
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463904.1066558-UTR-Ecto-sp13_S_contig65582:47..861681463904.1066558-UTR-Ecto-sp13_S_contig65582:47..86Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig65582 48..86 +
1681463904.1306772-UTR-Ecto-sp13_S_contig65582:467..6211681463904.1306772-UTR-Ecto-sp13_S_contig65582:467..621Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig65582 468..621 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463904.1190834-CDS-Ecto-sp13_S_contig65582:86..4671681463904.1190834-CDS-Ecto-sp13_S_contig65582:86..467Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig65582 87..467 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig65582.17385.1prot_Ecto-sp13_S_contig65582.17385.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig65582 87..467 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig65582.17385.1

>prot_Ecto-sp13_S_contig65582.17385.1 ID=prot_Ecto-sp13_S_contig65582.17385.1|Name=mRNA_Ecto-sp13_S_contig65582.17385.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp
MTAVVVVVVVIVDLPLLLQDGDHAVAVLPHVTRACVLAATDARATQRQRP
ITRRPPLLLALIGVFIWLGREFARNAAPKGVVSVRRRLEVDDTCLSFAEY
LCGGRTDQASPPRCTRDQQKVSRPRR*
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mRNA from alignment at Ecto-sp13_S_contig65582:48..621+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig65582.17385.1 ID=mRNA_Ecto-sp13_S_contig65582.17385.1|Name=mRNA_Ecto-sp13_S_contig65582.17385.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=574bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65582:48..621+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTGTTCTGCCCACCCGGCCGTGCGACGAGGGATCACGCATGACCGCGGT
GGTGGTGGTGGTGGTGGTGATCGTTGACCTGCCGCTGCTACTGCAAGACG
GCGACCATGCAGTAGCAGTACTGCCGCACGTAACGAGGGCCTGCGTTCTT
GCAGCGACTGACGCGAGGGCGACGCAACGGCAGAGGCCGATCACGCGGCG
CCCTCCTCTTCTCCTGGCCCTCATCGGCGTGTTCATCTGGCTAGGTCGTG
AGTTTGCAAGAAACGCAGCGCCGAAGGGCGTGGTGTCTGTACGACGACGA
CTTGAGGTTGATGACACGTGCTTGTCTTTCGCAGAATATCTCTGCGGTGG
GCGCACAGATCAGGCTAGCCCGCCTCGATGTACCCGCGACCAACAAAAGG
TTTCGAGACCACGACGATGATTCCTTCCCTGCGTGTGCTGCAGGAAGGAA
AGGTCAGCCAGACGGCAGCGCTTGGTCGTGCTCTCCTGGCCTGTCTCCGG
TGTGCGCCTTGGACACGTTTTGTAGTACTTGTAGCACGTTTCAAGGCCCC
TCCTTTCGCTCTGATCCTCCCGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig65582:48..621+

>mRNA_Ecto-sp13_S_contig65582.17385.1 ID=mRNA_Ecto-sp13_S_contig65582.17385.1|Name=mRNA_Ecto-sp13_S_contig65582.17385.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65582:48..621+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCGCGGTGGTGGTGGTGGTGGTGGTGATCGTTGACCTGCCGCTGCT
ACTGCAAGACGGCGACCATGCAGTAGCAGTACTGCCGCACGTAACGAGGG
CCTGCGTTCTTGCAGCGACTGACGCGAGGGCGACGCAACGGCAGAGGCCG
ATCACGCGGCGCCCTCCTCTTCTCCTGGCCCTCATCGGCGTGTTCATCTG
GCTAGGTCGTGAGTTTGCAAGAAACGCAGCGCCGAAGGGCGTGGTGTCTG
TACGACGACGACTTGAGGTTGATGACACGTGCTTGTCTTTCGCAGAATAT
CTCTGCGGTGGGCGCACAGATCAGGCTAGCCCGCCTCGATGTACCCGCGA
CCAACAAAAGGTTTCGAGACCACGACGATGA
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