mRNA_Ecto-sp13_S_contig6551.17375.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6551.17375.1
Unique NamemRNA_Ecto-sp13_S_contig6551.17375.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6551.17375.1 vs. uniprot
Match: A0A6H5J981_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J981_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 1.650e-40
Identity = 82/92 (89.13%), Postives = 85/92 (92.39%), Query Frame = 1 
Query:    1 RYHGPNSQFQGENAVMLGSHSTSHSMVALPVNSAQPAGASVPTGAPQSPPRNSNPPPAAAAEAEPRSAIVDRNNTGSRSVQIEGDDAEPEKG 276
            RYHGPNSQFQGENAVMLGSHSTSH MVALPVNSA PAGASVPTGAP  PPR+S PPPAAAAEAEPRSAIVDRN  GSR+V+IEGDDAEPEKG
Sbjct: 4185 RYHGPNSQFQGENAVMLGSHSTSHGMVALPVNSAHPAGASVPTGAPHPPPRDSTPPPAAAAEAEPRSAIVDRNYMGSRTVRIEGDDAEPEKG 4276
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BLAST of mRNA_Ecto-sp13_S_contig6551.17375.1 vs. uniprot
Match: D8LLX0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX0_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 6.870e-39
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 1 
Query:    1 RYHGPNSQFQGENAVMLGSHSTSHSMVALPVNSAQPAGASVPTGAPQSPPRNSNPPPAAAAEAEPRSAIVDRNNTGSRSV 240
            RYHGPNSQFQGENAVMLGSHSTSHSMVALPVNSAQPAGASVPTGAPQSPPRNSNPPPAAAAEAEPRSAIVDRNN GSRSV
Sbjct: 4001 RYHGPNSQFQGENAVMLGSHSTSHSMVALPVNSAQPAGASVPTGAPQSPPRNSNPPPAAAAEAEPRSAIVDRNNAGSRSV 4080
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6551.17375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J981_9PHAE1.650e-4089.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLX0_ECTSI6.870e-3998.75Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6551contigEcto-sp13_S_contig6551:5608..6191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score149.8
Seed ortholog evalue6.1e-34
Seed eggNOG ortholog2880.D8LLX0
Model size278
KEGG koko:K10691
KEGG Pathwayko05165,ko05203,map05165,map05203
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.perineurial glial growth
EggNOG OGsKOG1776@1,KOG1776@2759
EC2.3.2.27
Cds size276
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463903.450437-CDS-Ecto-sp13_S_contig6551:5607..57931681463903.450437-CDS-Ecto-sp13_S_contig6551:5607..5793Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6551 5608..5793 -
1681463903.4653366-CDS-Ecto-sp13_S_contig6551:6101..61911681463903.4653366-CDS-Ecto-sp13_S_contig6551:6101..6191Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6551 6102..6191 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6551.17375.1prot_Ecto-sp13_S_contig6551.17375.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6551 5608..6191 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6551.17375.1

>prot_Ecto-sp13_S_contig6551.17375.1 ID=prot_Ecto-sp13_S_contig6551.17375.1|Name=mRNA_Ecto-sp13_S_contig6551.17375.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
RYHGPNSQFQGENAVMLGSHSTSHSMVALPVNSAQPAGASVPTGAPQSPP
RNSNPPPAAAAEAEPRSAIVDRNNTGSRSVQIEGDDAEPEKG
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mRNA from alignment at Ecto-sp13_S_contig6551:5608..6191-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6551.17375.1 ID=mRNA_Ecto-sp13_S_contig6551.17375.1|Name=mRNA_Ecto-sp13_S_contig6551.17375.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=584bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6551:5608..6191- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTACCACGGCCCGAACAGCCAGTTCCAGGGAGAGAATGCCGTGATGTT
GGGCAGCCACAGCACCTCGCACAGCATGGTGGCTTTGCCGGTGAGAAGAG
AATCTCGCTTCGGCGGTGATGGTGTTTTGTTGTGTCCCAATATGTATCGT
CAGAGGTTGTCCCGTCTGTAGAGTGGTGTGCGCGCATCTGGCGGGCAGGT
CGTCGTTGATCAGTGCGTTGGTGGGTGACGTCGCTTTCGGGTGTGGCGTT
TTTAGAGTTTACCGATGATTTTGCGTAGGTAGGTAGGTGCTCGATAATCT
CATCAACACCGCTCCGGTGCAACGCCGCGTGGATTTTCCGCTTGACGTGC
TCGGATGATGACTTTTTTTTCGTGTTCTTACCTTCTTCTTCACAACAGGT
CAACTCTGCGCAACCGGCGGGTGCCTCCGTGCCCACGGGAGCGCCGCAGT
CCCCCCCGCGCAACTCGAACCCGCCGCCGGCCGCTGCCGCTGAGGCGGAG
CCGCGGAGCGCGATCGTGGACCGGAACAACACGGGCTCCCGCAGCGTGCA
AATCGAGGGAGACGACGCAGAACCTGAAAAGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6551:5608..6191-

>mRNA_Ecto-sp13_S_contig6551.17375.1 ID=mRNA_Ecto-sp13_S_contig6551.17375.1|Name=mRNA_Ecto-sp13_S_contig6551.17375.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6551:5608..6191- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTACCACGGCCCGAACAGCCAGTTCCAGGGAGAGAATGCCGTGATGTT
GGGCAGCCACAGCACCTCGCACAGCATGGTGGCTTTGCCGGTCAACTCTG
CGCAACCGGCGGGTGCCTCCGTGCCCACGGGAGCGCCGCAGTCCCCCCCG
CGCAACTCGAACCCGCCGCCGGCCGCTGCCGCTGAGGCGGAGCCGCGGAG
CGCGATCGTGGACCGGAACAACACGGGCTCCCGCAGCGTGCAAATCGAGG
GAGACGACGCAGAACCTGAAAAGGGG
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