mRNA_Ecto-sp13_S_contig6551.17372.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6551.17372.1
Unique NamemRNA_Ecto-sp13_S_contig6551.17372.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6551.17372.1 vs. uniprot
Match: D8LLX0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX0_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 8.000e-43
Identity = 84/92 (91.30%), Postives = 88/92 (95.65%), Query Frame = 1 
Query:  133 EMMRKAAFRTPAEGLTRLGAILRVPSMAVLASTIQLATALASMSRRLERMAAGGESWEAPPNAAPSADSGERPRHPHTSSPPTVEVMRRRHK 408
            EMMR+AAFRTPAEGLTRLGAILRVPSMAVLAS +QLATALASMSRRLERMAAGGESW APPNAAP+ADSGERP+HP TSSPPT EVMRRRHK
Sbjct: 4511 EMMRRAAFRTPAEGLTRLGAILRVPSMAVLASAVQLATALASMSRRLERMAAGGESWGAPPNAAPTADSGERPKHPQTSSPPTAEVMRRRHK 4602
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BLAST of mRNA_Ecto-sp13_S_contig6551.17372.1 vs. uniprot
Match: A0A6H5J981_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J981_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 1.090e-42
Identity = 85/93 (91.40%), Postives = 89/93 (95.70%), Query Frame = 1 
Query:  130 AEMMRKAAFRTPAEGLTRLGAILRVPSMAVLASTIQLATALASMSRRLERMAAGGESWEAPPNAAPSADSGERPRHPHTSSPPTVEVMRRRHK 408
            AEMMRKAAFRTPAEGLTRLGAILRVP+MAVLASTIQLATALASMSRRLE+MAAGGESWEAPPNAAP+ADSGE P+HP TSSPPT EVM RRHK
Sbjct: 5070 AEMMRKAAFRTPAEGLTRLGAILRVPAMAVLASTIQLATALASMSRRLEKMAAGGESWEAPPNAAPTADSGECPKHPQTSSPPTAEVMGRRHK 5162
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6551.17372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLX0_ECTSI8.000e-4391.30Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5J981_9PHAE1.090e-4291.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6551contigEcto-sp13_S_contig6551:541..1407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score162.2
Seed ortholog evalue1.8e-37
Seed eggNOG ortholog2880.D8LLX0
Model size409
KEGG koko:K10691
KEGG Pathwayko05165,ko05203,map05165,map05203
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.perineurial glial growth
EggNOG OGsKOG1776@1,KOG1776@2759
EC2.3.2.27
Cds size408
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463903.3920953-CDS-Ecto-sp13_S_contig6551:541..7031681463903.3920953-CDS-Ecto-sp13_S_contig6551:541..703Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6551 542..703 -
1681463903.4051676-CDS-Ecto-sp13_S_contig6551:1161..14071681463903.4051676-CDS-Ecto-sp13_S_contig6551:1161..1407Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6551 1162..1407 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6551.17372.1prot_Ecto-sp13_S_contig6551.17372.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6551 542..1407 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6551.17372.1

>prot_Ecto-sp13_S_contig6551.17372.1 ID=prot_Ecto-sp13_S_contig6551.17372.1|Name=mRNA_Ecto-sp13_S_contig6551.17372.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=136bp
DGSKRRSSRSSGMVAAAVASGSAYAPAAAPAVASTSSSSSSSKAEMMRKA
AFRTPAEGLTRLGAILRVPSMAVLASTIQLATALASMSRRLERMAAGGES
WEAPPNAAPSADSGERPRHPHTSSPPTVEVMRRRHK
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mRNA from alignment at Ecto-sp13_S_contig6551:541..1407-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6551.17372.1 ID=mRNA_Ecto-sp13_S_contig6551.17372.1|Name=mRNA_Ecto-sp13_S_contig6551.17372.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=867bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6551:541..1407- (Ectocarpus species13 EcNAP12_S_4_19m)
GACGGCAGCAAGAGGCGCTCTTCTCGCAGCAGCGGTATGGTCGCCGCTGC
TGTTGCCTCCGGCAGCGCTTACGCACCGGCCGCCGCCCCGGCGGTGGCTT
CGACGTCATCGTCTTCCTCTTCCTCGAAGGCTGAGATGATGAGAAAAGCT
GCGTTCCGGACGCCGGCCGAAGGCTTGACCAGGCTCGGCGCCATCTTGCG
GGTGCCCTCGATGGCGGTGCTGGCTTCTACGATTCAGCTGGCGACGGTAA
GAAACGCGTGCGATTTTTTTTTTTTTCAGTGCTCTGTCTTTGGTGAGAGA
GCTGGCGACTTTCACGCTGCTACTGGGGTCGTTTTTGAGTCCGCTTGCCT
TACATGGAGGCGCTGGGCTCTATGTGGGTAGTGATGTTCGACTATGCCTT
TTCTTGCGCTTAATTTTTTGTTTTGTAAATGCGCCACGACAAGTCGCGAT
GGTGCGAAGCGGATGGGTGGTCTGTTCCTTCGACCCAGCTAGCTGCAACA
GCAGTATGTAGTCACGGGCAGTACATTCATGGAGCGTCGGTTAATTTCAG
CAGTAGAGACTGGCCTTGCAGCGTGCGCGTGGTCCATCTAGCTTGCTAAC
ATGGTGCTTGTGCCGCAAAGTGCCTGGTTTGGTGTACCTATTTTGAGATG
GAGCCAGGAGAACCGCGGGTTGTGTCATCCCCCACCGCGTGCGCTTCGAC
GCAGGCTTTGGCGAGTATGAGCAGGCGCTTGGAGAGGATGGCGGCGGGCG
GCGAGAGCTGGGAGGCTCCGCCGAATGCAGCGCCCAGCGCAGATTCAGGA
GAGCGCCCAAGGCATCCTCATACGTCCTCGCCACCTACGGTGGAGGTGAT
GCGGCGGCGGCACAAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6551:541..1407-

>mRNA_Ecto-sp13_S_contig6551.17372.1 ID=mRNA_Ecto-sp13_S_contig6551.17372.1|Name=mRNA_Ecto-sp13_S_contig6551.17372.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=408bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6551:541..1407- (Ectocarpus species13 EcNAP12_S_4_19m)
GACGGCAGCAAGAGGCGCTCTTCTCGCAGCAGCGGTATGGTCGCCGCTGC
TGTTGCCTCCGGCAGCGCTTACGCACCGGCCGCCGCCCCGGCGGTGGCTT
CGACGTCATCGTCTTCCTCTTCCTCGAAGGCTGAGATGATGAGAAAAGCT
GCGTTCCGGACGCCGGCCGAAGGCTTGACCAGGCTCGGCGCCATCTTGCG
GGTGCCCTCGATGGCGGTGCTGGCTTCTACGATTCAGCTGGCGACGGCTT
TGGCGAGTATGAGCAGGCGCTTGGAGAGGATGGCGGCGGGCGGCGAGAGC
TGGGAGGCTCCGCCGAATGCAGCGCCCAGCGCAGATTCAGGAGAGCGCCC
AAGGCATCCTCATACGTCCTCGCCACCTACGGTGGAGGTGATGCGGCGGC
GGCACAAG
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