mRNA_Ecto-sp13_S_contig6551.17374.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6551.17374.1
Unique NamemRNA_Ecto-sp13_S_contig6551.17374.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6551.17374.1 vs. uniprot
Match: A0A6H5J981_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J981_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 4.030e-46
Identity = 94/102 (92.16%), Postives = 94/102 (92.16%), Query Frame = 1 
Query:   19 HDLVVVDLSEGGAEKDAPPQPAAVAASQHEGRQDEREVVMDDVAGFSVGEGAVLTEAERNVRTAQALAKAAAMHELSSALFPLLVELLPEVLGQEAAAEDPS 324
            HDLVVVDLSEG  EKDAPPQPAAVAASQHEGRQD REVVMDDV   SV EGAVLTEAERNVRTAQALAKAAAMHELSSALFPLLVE LPEVLGQEAAAEDPS
Sbjct: 4339 HDLVVVDLSEGRVEKDAPPQPAAVAASQHEGRQDGREVVMDDVVDLSVEEGAVLTEAERNVRTAQALAKAAAMHELSSALFPLLVERLPEVLGQEAAAEDPS 4440
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6551.17374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J981_9PHAE4.030e-4692.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6551contigEcto-sp13_S_contig6551:4573..5448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size353
Hectar predicted targeting categoryother localisation
Exons2
Cds size351
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463903.3150032-CDS-Ecto-sp13_S_contig6551:4573..45991681463903.3150032-CDS-Ecto-sp13_S_contig6551:4573..4599Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6551 4574..4599 -
1681463903.3275056-CDS-Ecto-sp13_S_contig6551:5123..54481681463903.3275056-CDS-Ecto-sp13_S_contig6551:5123..5448Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6551 5124..5448 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6551.17374.1prot_Ecto-sp13_S_contig6551.17374.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6551 4574..5448 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6551.17374.1

>prot_Ecto-sp13_S_contig6551.17374.1 ID=prot_Ecto-sp13_S_contig6551.17374.1|Name=mRNA_Ecto-sp13_S_contig6551.17374.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=117bp
EEAEEEHDLVVVDLSEGGAEKDAPPQPAAVAASQHEGRQDEREVVMDDVA
GFSVGEGAVLTEAERNVRTAQALAKAAAMHELSSALFPLLVELLPEVLGQ
EAAAEDPSAATVAAGGG
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mRNA from alignment at Ecto-sp13_S_contig6551:4573..5448-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6551.17374.1 ID=mRNA_Ecto-sp13_S_contig6551.17374.1|Name=mRNA_Ecto-sp13_S_contig6551.17374.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=876bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6551:4573..5448- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGAGGCGGAGGAGGAGCATGACCTCGTTGTCGTAGACCTGAGCGAAGG
GGGCGCCGAGAAGGACGCTCCGCCGCAGCCGGCGGCGGTGGCCGCGTCGC
AGCATGAAGGCCGCCAGGACGAACGGGAAGTTGTCATGGACGATGTCGCC
GGCTTTTCTGTTGGAGAGGGTGCGGTGCTAACGGAGGCGGAACGAAACGT
GCGAACCGCACAGGCCCTGGCGAAGGCCGCGGCGATGCATGAGCTATCCT
CGGCGCTTTTCCCCCTCCTTGTCGAGCTACTCCCGGAAGTTCTGGGGCAG
GAAGCTGCTGCCGAAGACCCTTCAGGTACGCAATCGATGCACGCAGTCGC
GGGAAGGATTTTGGTGACGGCACGTAGGAGTTTGACGACGACGACGACGA
CGGCGCACGTAGAATGTGGTGTGTTTTTTCTGTCTCGCCTACAAGACTTA
GCGCCACCGTGCCCTAAGAGTGTGAGCGATGTAGTATGGCGGTAAGGTGG
TGCTGCTGCGAGCACTGCTATGTCTGTGTCCGTGTCTCGTGACCGCTTCA
TTGAAAATTGTCCGTGGCGCTGTCGGTATTGGTGAGGACCTGCCCCACGA
GGACATTGTCAACTTTCTCTCAGGTAGTTTGTCTCTGGTTGCACTTGTTT
TTGTCCGGTCATGTAATTCACAACCACGGAAGCGGGTGACAACATCGCCG
CTGACTTTCCCCTACCTGCAGCCTAATGCGTAGCGATAGACAAACATAGA
TTTTCTCGTGGATTATGAGACGAGGCTTCATGACACTCACCCCTTTGTTC
TTCGCGTGGTGCGTTTACCGTGAAAAAACACATGTGCACACCATCGCAGC
GGCGACAGTAGCGGCAGGCGGCGGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6551:4573..5448-

>mRNA_Ecto-sp13_S_contig6551.17374.1 ID=mRNA_Ecto-sp13_S_contig6551.17374.1|Name=mRNA_Ecto-sp13_S_contig6551.17374.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=351bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6551:4573..5448- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGAGGCGGAGGAGGAGCATGACCTCGTTGTCGTAGACCTGAGCGAAGG
GGGCGCCGAGAAGGACGCTCCGCCGCAGCCGGCGGCGGTGGCCGCGTCGC
AGCATGAAGGCCGCCAGGACGAACGGGAAGTTGTCATGGACGATGTCGCC
GGCTTTTCTGTTGGAGAGGGTGCGGTGCTAACGGAGGCGGAACGAAACGT
GCGAACCGCACAGGCCCTGGCGAAGGCCGCGGCGATGCATGAGCTATCCT
CGGCGCTTTTCCCCCTCCTTGTCGAGCTACTCCCGGAAGTTCTGGGGCAG
GAAGCTGCTGCCGAAGACCCTTCAGCGGCGACAGTAGCGGCAGGCGGCGG
C
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