mRNA_Ecto-sp13_S_contig6547.17364.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6547.17364.1
Unique NamemRNA_Ecto-sp13_S_contig6547.17364.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6547.17364.1 vs. uniprot
Match: A0A6H5JHK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK5_9PHAE)

HSP 1 Score: 261 bits (666), Expect = 1.430e-80
Identity = 144/188 (76.60%), Postives = 154/188 (81.91%), Query Frame = 1 
Query:    1 SVSRRAHEQPPTIKAGSSLGVRTKDDDPRSGKGGADTANAPPSNXXXXXXXXXXXT-AISPGTRPTRDNNNRKPPRSPGGVPPEGREKGPLTSASSPTGGMILNAPGVVSKSVREREVKPPAPMRIGGFAAGAGAGGAIGRRGDKQRLGLAKGTKHGPATAGSGIIGGFPAVRHRSEMGLVKLGAGAS 561
            S SRRAH+QPPT+KAGSSLGVR +DDDPRSG+GGAD ANAPPSN             AIS G +PT  +N+R+PP S GG+ PE  EK PLTSASSPTGGMILNAPGVVSKSVREREVKPPAPMRIGGFA GAGAGG I  RGDKQRLGLAKG KHG A AGSGIIGGFPA RHRSEMGLVKLGAGA+
Sbjct:   29 SASRRAHKQPPTVKAGSSLGVRKEDDDPRSGRGGADHANAPPSNGGDAAAVAVAAAPAISSGAQPTCGSNDREPPHSLGGMAPEESEKSPLTSASSPTGGMILNAPGVVSKSVREREVKPPAPMRIGGFAGGAGAGGVIVTRGDKQRLGLAKGAKHGMAAAGSGIIGGFPAARHRSEMGLVKLGAGAA 216
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BLAST of mRNA_Ecto-sp13_S_contig6547.17364.1 vs. uniprot
Match: D8LHI7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHI7_ECTSI)

HSP 1 Score: 267 bits (682), Expect = 2.430e-79
Identity = 156/184 (84.78%), Postives = 162/184 (88.04%), Query Frame = 1 
Query:   25 QPPTIKAGSSLGVRTKDDDPRSGKGGADTANAPPSNXXXXXXXXXXX--TAISPGTRPTRDNNNRKPPRSPGGVPPEGREKGPLTSASSPTGGMILNAPGVVSKSVREREVKPPAPMRIGGFAAGAGAGGAIGRRGDKQRLGLAKGTKHGPATAGSGIIGGFPAVRHRSEMGLVKLGAGASAAS 570
            +PPTIKAGSSLGVR +DDDPRSG+GGADTANAP S   XXXXXX     TAISPGT+PTRDNNNR+PPRS G VPPE REKGPLTSASSPTGGMILNAPGVVSKSVREREVKPPAPMRIGGFA GAGAGGAIGRRGDKQR GLAKG KH  A A  GIIGGFPAVRHRSEMGLVKLG GA+AAS
Sbjct:   43 KPPTIKAGSSLGVRKEDDDPRSGRGGADTANAPRSTGGXXXXXXAVAAATAISPGTQPTRDNNNREPPRSLG-VPPEEREKGPLTSASSPTGGMILNAPGVVSKSVREREVKPPAPMRIGGFAGGAGAGGAIGRRGDKQRFGLAKGAKHVTAVAERGIIGGFPAVRHRSEMGLVKLGVGAAAAS 225
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6547.17364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHK5_9PHAE1.430e-8076.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHI7_ECTSI2.430e-7984.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6547contigEcto-sp13_S_contig6547:6748..7324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score272.7
Seed ortholog evalue1.3e-70
Seed eggNOG ortholog2880.D8LHI7
Preferred nameRPAP1
Model size579
KEGG koko:K19496,ko:K20826
KEGG TC1.A.17.1.1,1.A.17.1.22
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0030154,GO:0030880,GO:0032502,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0048869,GO:0061695,GO:0071704,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Exons1
EggNOG free text desc.transcription by RNA polymerase II
EggNOG OGsKOG4732@1,KOG4732@2759
Cds size576
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021,ko04040
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463902.643018-CDS-Ecto-sp13_S_contig6547:6747..73231681463902.643018-CDS-Ecto-sp13_S_contig6547:6747..7323Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6547 6748..7323 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6547.17364.1prot_Ecto-sp13_S_contig6547.17364.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6547 6748..7323 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6547.17364.1

>prot_Ecto-sp13_S_contig6547.17364.1 ID=prot_Ecto-sp13_S_contig6547.17364.1|Name=mRNA_Ecto-sp13_S_contig6547.17364.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=192bp
SVSRRAHEQPPTIKAGSSLGVRTKDDDPRSGKGGADTANAPPSNGGDSAA
AVAAATAISPGTRPTRDNNNRKPPRSPGGVPPEGREKGPLTSASSPTGGM
ILNAPGVVSKSVREREVKPPAPMRIGGFAAGAGAGGAIGRRGDKQRLGLA
KGTKHGPATAGSGIIGGFPAVRHRSEMGLVKLGAGASAASTG
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mRNA from alignment at Ecto-sp13_S_contig6547:6748..7324+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6547.17364.1 ID=mRNA_Ecto-sp13_S_contig6547.17364.1|Name=mRNA_Ecto-sp13_S_contig6547.17364.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=577bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6547:6748..7324+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCGTATCACGACGTGCGCACGAGCAGCCGCCGACCATAAAAGCCGGATC
CTCTCTCGGGGTGAGAACGAAGGACGACGACCCCCGCAGCGGCAAGGGTG
GCGCTGATACCGCGAACGCGCCGCCCTCGAACGGCGGTGACTCGGCGGCG
GCGGTGGCAGCAGCGACGGCGATTTCCCCGGGGACCCGACCAACCCGCGA
CAACAACAACCGCAAACCCCCCCGTAGTCCAGGCGGCGTGCCCCCTGAAG
GGCGCGAGAAGGGTCCGCTGACGTCGGCCTCGTCGCCAACGGGGGGGATG
ATCCTGAACGCCCCCGGGGTGGTGTCGAAGAGCGTTCGCGAGAGGGAGGT
CAAGCCGCCGGCGCCGATGAGAATAGGCGGCTTCGCCGCCGGCGCTGGTG
CTGGCGGGGCGATCGGGAGACGAGGAGACAAGCAGCGTCTCGGACTCGCG
AAGGGAACGAAGCACGGACCGGCGACGGCGGGGAGCGGTATCATCGGAGG
GTTCCCGGCGGTGCGCCACCGGTCAGAGATGGGCCTCGTTAAGCTCGGGG
CGGGTGCTTCAGCCGCTTCTACTGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6547:6748..7324+

>mRNA_Ecto-sp13_S_contig6547.17364.1 ID=mRNA_Ecto-sp13_S_contig6547.17364.1|Name=mRNA_Ecto-sp13_S_contig6547.17364.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=576bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6547:6748..7324+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCGTATCACGACGTGCGCACGAGCAGCCGCCGACCATAAAAGCCGGATC
CTCTCTCGGGGTGAGAACGAAGGACGACGACCCCCGCAGCGGCAAGGGTG
GCGCTGATACCGCGAACGCGCCGCCCTCGAACGGCGGTGACTCGGCGGCG
GCGGTGGCAGCAGCGACGGCGATTTCCCCGGGGACCCGACCAACCCGCGA
CAACAACAACCGCAAACCCCCCCGTAGTCCAGGCGGCGTGCCCCCTGAAG
GGCGCGAGAAGGGTCCGCTGACGTCGGCCTCGTCGCCAACGGGGGGGATG
ATCCTGAACGCCCCCGGGGTGGTGTCGAAGAGCGTTCGCGAGAGGGAGGT
CAAGCCGCCGGCGCCGATGAGAATAGGCGGCTTCGCCGCCGGCGCTGGTG
CTGGCGGGGCGATCGGGAGACGAGGAGACAAGCAGCGTCTCGGACTCGCG
AAGGGAACGAAGCACGGACCGGCGACGGCGGGGAGCGGTATCATCGGAGG
GTTCCCGGCGGTGCGCCACCGGTCAGAGATGGGCCTCGTTAAGCTCGGGG
CGGGTGCTTCAGCCGCTTCTACTGGT
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