mRNA_Ecto-sp13_S_contig65441.17362.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig65441.17362.1
Unique NamemRNA_Ecto-sp13_S_contig65441.17362.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig65441.17362.1 vs. uniprot
Match: UPI0013D29528 (tetratricopeptide repeat protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D29528)

HSP 1 Score: 57.8 bits (138), Expect = 1.750e-9
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    4 GKYDEAEPLYIRAIAIREKALGPDHPDVASCLKNLA 111
            GKY+EAEPLY RA+ IRE  LGPDHP VA+ L NLA
Sbjct:    5 GKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLA 40
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BLAST of mRNA_Ecto-sp13_S_contig65441.17362.1 vs. uniprot
Match: A0A6H5J9V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9V8_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.750e-9
Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    4 GKYDEAEPLYIRAIAIREKALGPDHPDVASCLKNLADPLQSQ 129
            GKYD AEPLY+R++AIREK  GPDHP+VA+ L N A+ L+ Q
Sbjct:  396 GKYDAAEPLYVRSLAIREKVYGPDHPEVATSLNNRAEFLRHQ 437
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BLAST of mRNA_Ecto-sp13_S_contig65441.17362.1 vs. uniprot
Match: A0A6H5K4D0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D0_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 3.800e-9
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    4 GKYDEAEPLYIRAIAIREKALGPDHPDVASCLKNLADPLQSQ 129
            GKYDEA  LY R++AIREKALGPDHPDVA  L N A  L+SQ
Sbjct:  832 GKYDEAGKLYERSLAIREKALGPDHPDVAQSLNNWAVLLESQ 873
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BLAST of mRNA_Ecto-sp13_S_contig65441.17362.1 vs. uniprot
Match: A0A838EQG9_9CHLR (Tetratricopeptide repeat protein n=1 Tax=Ktedonobacteraceae bacterium TaxID=2740538 RepID=A0A838EQG9_9CHLR)

HSP 1 Score: 55.1 bits (131), Expect = 2.810e-8
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    7 KYDEAEPLYIRAIAIREKALGPDHPDVASCLKNLADPLQSQ 129
            KY +AEPLY+RA+AIRE+ LG  HPD AS L NLA+  ++Q
Sbjct:    1 KYAQAEPLYVRALAIREQELGAQHPDTASSLNNLAELYRNQ 41
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BLAST of mRNA_Ecto-sp13_S_contig65441.17362.1 vs. uniprot
Match: UPI0013D05A06 (tetratricopeptide repeat-containing protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D05A06)

HSP 1 Score: 57.8 bits (138), Expect = 2.890e-8
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    4 GKYDEAEPLYIRAIAIREKALGPDHPDVASCLKNLA 111
            GKY+EAEPLY RA+ IRE  LGPDHP VA+ L NLA
Sbjct:    5 GKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLA 40
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BLAST of mRNA_Ecto-sp13_S_contig65441.17362.1 vs. uniprot
Match: X0XF05_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0XF05_9ZZZZ)

HSP 1 Score: 57.4 bits (137), Expect = 4.090e-8
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    4 GKYDEAEPLYIRAIAIREKALGPDHPDVASCLKNLA 111
            G Y +AEPLY RA+AI EKALGP+HPDVA+ L NLA
Sbjct:    9 GDYSKAEPLYKRALAIMEKALGPEHPDVATSLNNLA 44
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BLAST of mRNA_Ecto-sp13_S_contig65441.17362.1 vs. uniprot
Match: A0A433PUW4_9FUNG (TPR repeat-containing protein (Fragment) n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433PUW4_9FUNG)

HSP 1 Score: 53.9 bits (128), Expect = 4.240e-8
Identity = 25/37 (67.57%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 KGKYDEAEPLYIRAIAIREKALGPDHPDVASCLKNLA 111
            KGKYD A PLY RA+ IREK LG +HPD A+ L NLA
Sbjct:   20 KGKYDMAAPLYERALEIREKELGSEHPDTATSLNNLA 56
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BLAST of mRNA_Ecto-sp13_S_contig65441.17362.1 vs. uniprot
Match: UPI0008C8EAEC (tetratricopeptide repeat protein n=1 Tax=Nitrosovibrio sp. Nv6 TaxID=1855340 RepID=UPI0008C8EAEC)

HSP 1 Score: 57.8 bits (138), Expect = 4.480e-8
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    4 GKYDEAEPLYIRAIAIREKALGPDHPDVASCLKNLADPLQSQ 129
            G Y  AEPL+ +A+AIREK LGPDHPDVAS L NLA+  ++Q
Sbjct:  225 GHYARAEPLFHQALAIREKTLGPDHPDVASSLHNLAELYRAQ 266
[Close]
BLAST of mRNA_Ecto-sp13_S_contig65441.17362.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 4.620e-8
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    4 GKYDEAEPLYIRAIAIREKALGPDHPDVASCLKNLA 111
            GKY+EA PLY R++AIREK LGPDHPDVA  L N A
Sbjct:  799 GKYEEAGPLYERSLAIREKVLGPDHPDVAQSLNNRA 834
[Close]
BLAST of mRNA_Ecto-sp13_S_contig65441.17362.1 vs. uniprot
Match: A0A6H5K8Z8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z8_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 4.620e-8
Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    4 GKYDEAEPLYIRAIAIREKALGPDHPDVASCLKN 105
            GKYD+AE LY R++AIREK LGP+HPDVA  L N
Sbjct:   17 GKYDDAEQLYERSLAIREKVLGPEHPDVAQSLNN 50
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig65441.17362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0013D295281.750e-972.22tetratricopeptide repeat protein n=1 Tax=Desulfoba... [more]
A0A6H5J9V8_9PHAE2.750e-964.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4D0_9PHAE3.800e-971.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A838EQG9_9CHLR2.810e-860.98Tetratricopeptide repeat protein n=1 Tax=Ktedonoba... [more]
UPI0013D05A062.890e-872.22tetratricopeptide repeat-containing protein n=1 Ta... [more]
X0XF05_9ZZZZ4.090e-872.22Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A433PUW4_9FUNG4.240e-867.57TPR repeat-containing protein (Fragment) n=1 Tax=J... [more]
UPI0008C8EAEC4.480e-864.29tetratricopeptide repeat protein n=1 Tax=Nitrosovi... [more]
A0A6H5JJK0_9PHAE4.620e-872.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8Z8_9PHAE4.620e-870.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig65441contigEcto-sp13_S_contig65441:26..755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size210
Hectar predicted targeting categoryother localisation
Exons2
Cds size210
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463902.535549-CDS-Ecto-sp13_S_contig65441:25..1541681463902.535549-CDS-Ecto-sp13_S_contig65441:25..154Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig65441 26..154 +
1681463902.5488343-CDS-Ecto-sp13_S_contig65441:674..7551681463902.5488343-CDS-Ecto-sp13_S_contig65441:674..755Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig65441 675..755 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig65441.17362.1prot_Ecto-sp13_S_contig65441.17362.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig65441 26..755 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig65441.17362.1

>prot_Ecto-sp13_S_contig65441.17362.1 ID=prot_Ecto-sp13_S_contig65441.17362.1|Name=mRNA_Ecto-sp13_S_contig65441.17362.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
KGKYDEAEPLYIRAIAIREKALGPDHPDVASCLKNLADPLQSQGKYDEAE
PLYIRAIAIREKALGPDHPD
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mRNA from alignment at Ecto-sp13_S_contig65441:26..755+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig65441.17362.1 ID=mRNA_Ecto-sp13_S_contig65441.17362.1|Name=mRNA_Ecto-sp13_S_contig65441.17362.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=730bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65441:26..755+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGGCAAGTACGACGAGGCGGAGCCGTTGTACATTCGAGCAATCGCGAT
CAGAGAGAAGGCGCTGGGTCCGGATCATCCAGACGTTGCCAGCTGTCTCA
AAAACCTTGCGGACCCATTGCAGAGTCAGGTGAGAGTCGAATCAGTTGTG
CGTGGGAATGGGCAATACGGGTGCACATTTCTCGGTGTGAGGTATGTTTG
ATTTTGGTGTAAACCGCTGACGTTCACCCGTCTTCACATCTTGTGTCGCA
AGGACAGTAAGTATGCTGCGGTCGGTTGACTTGATGGGCTGTCACAGGCT
GTGCTCGAGAAGTTGCTAAGTCCGGAAAACCCGTGTGTGTGTGTGATGTG
ACTTGGGTCGCACAATGAGCAAGGCGTGGCTGTCGACCATTTGTTCCTCC
GCACTATACGCTACACGTACGCGTGGTGACACCCTCTTCCTCTTCCCTCC
CCGTCCAGAGCAAAGTATGCTGAGACGGTACCACTACATGTGCGGTGTGA
GGCGACACAGGGCAAGGTTCTCGGCCGTGAGTTTCCCAAGCTAGGCTGCA
TTGCTCAACAAGCAGACACTGGTGCTGACTACTGCTTCTTCCCAGCGAAG
CCAACAAGCCTTGACGTTCCTATCCCGTCTCCCGCTTATGTTCTATTAGG
GCAAGTACGACGAGGCGGAGCCGTTGTACATTCGAGCAATCGCGATCAGA
GAGAAGGCGCTGGGTCCGGATCATCCAGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig65441:26..755+

>mRNA_Ecto-sp13_S_contig65441.17362.1 ID=mRNA_Ecto-sp13_S_contig65441.17362.1|Name=mRNA_Ecto-sp13_S_contig65441.17362.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65441:26..755+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGGCAAGTACGACGAGGCGGAGCCGTTGTACATTCGAGCAATCGCGAT
CAGAGAGAAGGCGCTGGGTCCGGATCATCCAGACGTTGCCAGCTGTCTCA
AAAACCTTGCGGACCCATTGCAGAGTCAGGGCAAGTACGACGAGGCGGAG
CCGTTGTACATTCGAGCAATCGCGATCAGAGAGAAGGCGCTGGGTCCGGA
TCATCCAGAC
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