mRNA_Ecto-sp13_S_contig6544.17361.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6544.17361.1
Unique NamemRNA_Ecto-sp13_S_contig6544.17361.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6544.17361.1 vs. uniprot
Match: A0A6H5JNZ2_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNZ2_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 8.080e-40
Identity = 77/98 (78.57%), Postives = 82/98 (83.67%), Query Frame = 3 
Query:  567 TPAVVVRLNVGIGHQTGGGLDWDGRVFPGLDVWQMDVGVVGLSLENEDLTGTLGETARPVYDKDGEAVIKGDDAFRRTAEDYRVSGGLGADFALPHHK 860
            TPAVVVRLNVGIGHQ G  +DWDGRV P LDVWQMDVG+ GLSLENE LTG LGETARPVYD+DG AV+ GDDA+R T EDYRVSG LG DFAL H K
Sbjct:  599 TPAVVVRLNVGIGHQDGDEVDWDGRVLPDLDVWQMDVGLTGLSLENEALTGILGETARPVYDEDGHAVMAGDDAYRGTPEDYRVSGPLGMDFALLHQK 696
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BLAST of mRNA_Ecto-sp13_S_contig6544.17361.1 vs. uniprot
Match: A0A6H5JP35_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP35_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 6.830e-36
Identity = 69/98 (70.41%), Postives = 78/98 (79.59%), Query Frame = 3 
Query:  567 TPAVVVRLNVGIGHQTGGGLDWDGRVFPGLDVWQMDVGVVGLSLENEDLTGTLGETARPVYDKDGEAVIKGDDAFRRTAEDYRVSGGLGADFALPHHK 860
            TP VVVR NVGIGHQTGG ++ DGR+ P LDVW+MDVG+ GLSLENE LTG LGETARPV D+ G AV+KG+ A+R T EDYRVSG LG DFAL   K
Sbjct:  255 TPEVVVRFNVGIGHQTGGHVEMDGRIVPDLDVWEMDVGLAGLSLENETLTGILGETARPVLDEHGRAVMKGNKAYRGTPEDYRVSGALGTDFALLRQK 352
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BLAST of mRNA_Ecto-sp13_S_contig6544.17361.1 vs. uniprot
Match: D8LMW2_ECTSI (Imm upregulated 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW2_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 3.720e-30
Identity = 60/98 (61.22%), Postives = 72/98 (73.47%), Query Frame = 3 
Query:  567 TPAVVVRLNVGIGHQTGGGLDWDGRVFPGLDVWQMDVGVVGLSLENEDLTGTLGETARPVYDKDGEAVIKGDDAFRRTAEDYRVSGGLGADFALPHHK 860
            TP V VRLN G+ +Q  G L+WDGRV P L+ WQMDVG+ GL ++N  L+G LGETARPVY ++GEAV++G DAFR T EDYRVS  LG  FAL   K
Sbjct:  212 TPTVTVRLNAGVNYQGDGELNWDGRVLPDLEFWQMDVGIDGLDVDNPALSGLLGETARPVYGENGEAVMEGSDAFRGTVEDYRVSSALGVHFALLDEK 309
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BLAST of mRNA_Ecto-sp13_S_contig6544.17361.1 vs. uniprot
Match: A0A6H5JP37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP37_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 7.750e-27
Identity = 54/94 (57.45%), Postives = 69/94 (73.40%), Query Frame = 3 
Query:  567 TPAVVVRLNVGIGHQTGGGLDWDGRVFPGLDVWQMDVGVVGLSLENEDLTGTLGETARPVYDKDGEAVIKGDDAFRRTAEDYRVSGGLGADFAL 848
            TP V VRLN G+ +Q+ G L+WDGRV P L+ WQ+DVG+ GL ++   L+G  GETA PVYD++G+AV++G DAFR   EDYRVS  LG  FAL
Sbjct:  197 TPTVTVRLNAGVNYQSNGELNWDGRVLPDLEFWQIDVGIDGLDVDKPALSGLFGETACPVYDENGKAVMEGYDAFRGAVEDYRVSSALGVHFAL 290
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BLAST of mRNA_Ecto-sp13_S_contig6544.17361.1 vs. uniprot
Match: A0A6H5JS96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS96_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 7.020e-26
Identity = 56/98 (57.14%), Postives = 69/98 (70.41%), Query Frame = 3 
Query:  567 TPAVVVRLNVGIGHQTGGGLDWDGRVFPGLDVWQMDVGVVGLSLENEDLTGTLGETARPVYDKDGEAVIKGDDAFRRTAEDYRVSGGLGADFALPHHK 860
            TP V VRLN G+ +Q  G L+WDGRV P L+ WQM VG+ GL ++N  L+G LGETARPVYD++G+ V++G DAFR T EDYRVS  L   F L   K
Sbjct:  311 TPTVTVRLNAGVNYQGNGELNWDGRVLPDLEFWQMGVGMDGLDVDNPALSGLLGETARPVYDENGQVVMEGFDAFRGTIEDYRVSDALDVHFPLLDEK 408
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BLAST of mRNA_Ecto-sp13_S_contig6544.17361.1 vs. uniprot
Match: A0A6H5KYZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYZ4_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 6.050e-24
Identity = 50/64 (78.12%), Postives = 53/64 (82.81%), Query Frame = 3 
Query:  669 MDVGVVGLSLENEDLTGTLGETARPVYDKDGEAVIKGDDAFRRTAEDYRVSGGLGADFALPHHK 860
            MDVG+VGLSLENE + G LGETARP  DKDG AV KGDDAFR TAEDYRVSG LG DFAL HH+
Sbjct:    1 MDVGLVGLSLENESVAGILGETARPNNDKDGRAVTKGDDAFRGTAEDYRVSGALGGDFALLHHE 64
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6544.17361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JNZ2_9PHAE8.080e-4078.57VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JP35_9PHAE6.830e-3670.41Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D8LMW2_ECTSI3.720e-3061.22Imm upregulated 3 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5JP37_9PHAE7.750e-2757.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS96_9PHAE7.020e-2657.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYZ4_9PHAE6.050e-2478.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6544contigEcto-sp13_S_contig6544:4535..5542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1008
Hectar predicted targeting categoryother localisation
Exons1
Cds size417
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463902.467895-UTR-Ecto-sp13_S_contig6544:4534..49801681463902.467895-UTR-Ecto-sp13_S_contig6544:4534..4980Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6544 4535..4980 +
1681463902.488022-UTR-Ecto-sp13_S_contig6544:5397..55421681463902.488022-UTR-Ecto-sp13_S_contig6544:5397..5542Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6544 5398..5542 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463902.4781375-CDS-Ecto-sp13_S_contig6544:4980..53971681463902.4781375-CDS-Ecto-sp13_S_contig6544:4980..5397Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6544 4981..5397 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6544.17361.1prot_Ecto-sp13_S_contig6544.17361.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6544 4981..5397 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6544.17361.1

>prot_Ecto-sp13_S_contig6544.17361.1 ID=prot_Ecto-sp13_S_contig6544.17361.1|Name=mRNA_Ecto-sp13_S_contig6544.17361.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=139bp
MHAPWFYRTFRTHRSCQVHRTRRREGPVGFTVPPRHIPDHTPAVVVRLNV
GIGHQTGGGLDWDGRVFPGLDVWQMDVGVVGLSLENEDLTGTLGETARPV
YDKDGEAVIKGDDAFRRTAEDYRVSGGLGADFALPHHK*
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mRNA from alignment at Ecto-sp13_S_contig6544:4535..5542+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6544.17361.1 ID=mRNA_Ecto-sp13_S_contig6544.17361.1|Name=mRNA_Ecto-sp13_S_contig6544.17361.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1008bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6544:4535..5542+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAACCATACTCGCGACATCGCGACGTTTGCTCTGTAGCTCTGTAGCTCTG
TAGCTCTGTAGCTCTGTAGCTCTGTAGCTCGAGGTACGCATTTGGACCGG
GTTGTGCAAGGGATGGGGAAGCCGAATGAGGCGGATATTGATCTGAGAAG
CTGAACCTAAAATCTTCACAACTCCTAGACTACTGTACTAGCAAGGCTGG
TGGCGCGAAGTTCACATTCATCCATAACGTGAATCGAAATGGTCATCGAC
TTACGGTCCCGGCCGACGAATGCCCTCTCTCATCCCGCTGGAAGGGATTA
TTCATGGCAATGATTTGGGCGCCAGAGACTTTCTGAGAGGGTCGTAGCAG
TGATCTATGACTTCTTCAGGATATCCGTACAGTTGTTGGTGACGCATTCA
AACTGACCTCGATATTCTCGCGCCATTGATTGAATCGCTTGACGCCATGC
ATGCACCGTGGTTCTACCGCACGTTTCGAACTCATCGATCATGCCAGGTG
CACCGAACACGTCGCCGAGAAGGGCCTGTGGGATTTACAGTCCCCCCACG
CCATATACCAGATCACACACCGGCGGTCGTCGTGCGGCTCAACGTCGGTA
TTGGGCACCAGACTGGTGGCGGGCTTGACTGGGACGGCCGTGTCTTCCCT
GGCCTTGATGTGTGGCAGATGGACGTCGGCGTCGTCGGCCTATCCCTCGA
GAACGAAGATTTGACCGGAACTCTTGGAGAAACTGCCCGCCCTGTTTATG
ACAAGGATGGCGAAGCCGTAATCAAGGGGGATGACGCGTTCCGCAGAACT
GCCGAGGACTACCGTGTGTCCGGTGGCCTTGGCGCGGACTTCGCCCTCCC
TCATCACAAGTGATGGGGCGATGCCATACTACGGCCAGACTCATGGCTTA
CAAGAAGAGAGCGCAGGCTTTGGCGCCGGACGTCACGGTTACAGAGGTGA
AAGGGGTCCGTTCTTACCCCCACATCGACTAGGTAAGTAGCATCGTCTGC
GCTCCGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6544:4535..5542+

>mRNA_Ecto-sp13_S_contig6544.17361.1 ID=mRNA_Ecto-sp13_S_contig6544.17361.1|Name=mRNA_Ecto-sp13_S_contig6544.17361.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=417bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6544:4535..5542+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATGCACCGTGGTTCTACCGCACGTTTCGAACTCATCGATCATGCCA
GGTGCACCGAACACGTCGCCGAGAAGGGCCTGTGGGATTTACAGTCCCCC
CACGCCATATACCAGATCACACACCGGCGGTCGTCGTGCGGCTCAACGTC
GGTATTGGGCACCAGACTGGTGGCGGGCTTGACTGGGACGGCCGTGTCTT
CCCTGGCCTTGATGTGTGGCAGATGGACGTCGGCGTCGTCGGCCTATCCC
TCGAGAACGAAGATTTGACCGGAACTCTTGGAGAAACTGCCCGCCCTGTT
TATGACAAGGATGGCGAAGCCGTAATCAAGGGGGATGACGCGTTCCGCAG
AACTGCCGAGGACTACCGTGTGTCCGGTGGCCTTGGCGCGGACTTCGCCC
TCCCTCATCACAAGTGA
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