mRNA_Ecto-sp13_S_contig6543.17359.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6543.17359.1
Unique NamemRNA_Ecto-sp13_S_contig6543.17359.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6543.17359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6543contigEcto-sp13_S_contig6543:2934..3757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size824
Hectar predicted targeting categoryother localisation
Exons1
Cds size438
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463902.361682-UTR-Ecto-sp13_S_contig6543:2933..30201681463902.361682-UTR-Ecto-sp13_S_contig6543:2933..3020Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6543 2934..3020 +
1681463902.3882902-UTR-Ecto-sp13_S_contig6543:3458..37571681463902.3882902-UTR-Ecto-sp13_S_contig6543:3458..3757Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6543 3459..3757 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463902.378526-CDS-Ecto-sp13_S_contig6543:3020..34581681463902.378526-CDS-Ecto-sp13_S_contig6543:3020..3458Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6543 3021..3458 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6543.17359.1prot_Ecto-sp13_S_contig6543.17359.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6543 3021..3458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6543.17359.1

>prot_Ecto-sp13_S_contig6543.17359.1 ID=prot_Ecto-sp13_S_contig6543.17359.1|Name=mRNA_Ecto-sp13_S_contig6543.17359.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=146bp
MDSCQLRMGVTGEAKVFSRFEDRDGNRLRHMDVSGGVVPVCVSAPFVHCL
MVLSTSLRVRVFALVVPCLRTTGFRQKLRFNTPASRTDRDSSRGEEMSQV
VYVVEPCAHIHLSRVCYRNHLRGSSRSTTLKQALGPGQPCYIERA*
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mRNA from alignment at Ecto-sp13_S_contig6543:2934..3757+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6543.17359.1 ID=mRNA_Ecto-sp13_S_contig6543.17359.1|Name=mRNA_Ecto-sp13_S_contig6543.17359.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=824bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6543:2934..3757+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGCAATCACTGTAGAGTCTCCTTTTCGCTCTGGGGTCAGCTGGTTCCTG
GGATTGATCTGGTCTATGCCATTTTTCCTCGTAGGTGATGGATTCGTGTC
AACTGCGGATGGGTGTCACGGGGGAGGCTAAGGTATTCTCCAGATTTGAA
GATAGAGACGGAAACAGATTGAGGCATATGGACGTGTCAGGCGGGGTCGT
TCCCGTTTGTGTCTCGGCTCCCTTCGTGCATTGCTTGATGGTTCTGTCAA
CCTCCTTGCGCGTGCGTGTTTTCGCCTTAGTTGTTCCTTGTTTACGTACA
ACAGGATTTCGACAGAAACTTCGGTTTAACACTCCAGCAAGCAGGACAGA
CAGAGACAGTTCTCGAGGAGAGGAAATGAGTCAGGTGGTGTACGTTGTCG
AACCATGCGCACATATACATCTGTCACGTGTTTGTTATCGCAACCATCTC
CGAGGCAGCAGCCGATCGACAACCCTGAAACAAGCCCTAGGTCCTGGGCA
GCCGTGTTACATCGAGCGTGCCTAGAGGCGGAGAGTTGGCACCCCCCCCT
ATACCAATTTTCAAAGTTCAATTGCCGTACAAGCCGACACCAAAAATGGT
GGTTTCGTGAACATCTCGTGGAGCAGGACTTCCCGCCGACGAACCGGGCT
CTTTCGGCACACTTTGGTTGTAAAGCAATCGAGCTTTGAAAGACGGTCTA
CATGTAGGGGAGGGGTGCCATTTCTCCGCATCTTAGGGCCTGTTTTCCTG
TTTTGACGTCGAAGTTGCACCTAAATTGAGCACCCAATTTGGATGGACCT
AATTGGGTTATTGTCCAAAATGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6543:2934..3757+

>mRNA_Ecto-sp13_S_contig6543.17359.1 ID=mRNA_Ecto-sp13_S_contig6543.17359.1|Name=mRNA_Ecto-sp13_S_contig6543.17359.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=438bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6543:2934..3757+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATTCGTGTCAACTGCGGATGGGTGTCACGGGGGAGGCTAAGGTATT
CTCCAGATTTGAAGATAGAGACGGAAACAGATTGAGGCATATGGACGTGT
CAGGCGGGGTCGTTCCCGTTTGTGTCTCGGCTCCCTTCGTGCATTGCTTG
ATGGTTCTGTCAACCTCCTTGCGCGTGCGTGTTTTCGCCTTAGTTGTTCC
TTGTTTACGTACAACAGGATTTCGACAGAAACTTCGGTTTAACACTCCAG
CAAGCAGGACAGACAGAGACAGTTCTCGAGGAGAGGAAATGAGTCAGGTG
GTGTACGTTGTCGAACCATGCGCACATATACATCTGTCACGTGTTTGTTA
TCGCAACCATCTCCGAGGCAGCAGCCGATCGACAACCCTGAAACAAGCCC
TAGGTCCTGGGCAGCCGTGTTACATCGAGCGTGCCTAG
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