mRNA_Ecto-sp13_S_contig6541.17357.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6541.17357.1
Unique NamemRNA_Ecto-sp13_S_contig6541.17357.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6541.17357.1 vs. uniprot
Match: A0A6H5K7P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P8_9PHAE)

HSP 1 Score: 416 bits (1069), Expect = 2.040e-134
Identity = 227/249 (91.16%), Postives = 230/249 (92.37%), Query Frame = 1 
Query:    1 HAVARGLQSDTWLLGVNLARNGITDHGAALLSVCLQHNATLCALVLDGNPEVGHGAERRITEELETRSMMPEAVLEEPEVVLTLASWGFSAHTGVDRDLSPPTRPAAAVAESGSVVSEISQGSFGGGGXXXNLXXDGFGGDTRRDGAASGASAAISTSVQAKTPAERKEEMVREFRRWAGYTPCSMRGPGSHGTGLVDPSTAEATATAPPASGHEGGTVGRRPGRGRQSTAVLLRAESGVGAPAAEASW 747
            HAVARGLQSDTWL+GVNLARNGITDHGAALLSVCLQHNATLCALVLDGNPEVGHGAERRITEELETRSMMPEAVLEEPEVVLTLASWGFSAHTGVDRDLSPPTRPAAAVA SGSVVSEISQ SFG   XXX  X + FGG TRR  AAS ASAAI TSVQAKTPAERKEEMVREFRRWAGYTPCSMRGPG HGTGL DPSTAEATATAPPASGHEGGTVGRRPGRGR+STAVLLRA SG GAPAAEA W
Sbjct:  344 HAVARGLQSDTWLVGVNLARNGITDHGAALLSVCLQHNATLCALVLDGNPEVGHGAERRITEELETRSMMPEAVLEEPEVVLTLASWGFSAHTGVDRDLSPPTRPAAAVAGSGSVVSEISQDSFGXXXXXXXXXHE-FGGATRRGRAASSASAAIPTSVQAKTPAERKEEMVREFRRWAGYTPCSMRGPGPHGTGLADPSTAEATATAPPASGHEGGTVGRRPGRGRRSTAVLLRAGSGAGAPAAEAPW 591
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BLAST of mRNA_Ecto-sp13_S_contig6541.17357.1 vs. uniprot
Match: D8LBL5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBL5_ECTSI)

HSP 1 Score: 380 bits (977), Expect = 2.530e-125
Identity = 215/247 (87.04%), Postives = 216/247 (87.45%), Query Frame = 1 
Query:    1 HAVARGLQSDTWLLGVNLARNGITDHGAALLSVCLQHNATLCALVLDGNPEVGHGAERRITEELETRSMMPEAVLEEPEVVLTLASWGFSAHTGVDRDLSPPTRPAAAVAESGSVVSEISQGSFGGGGXXXNLXXDGFGGDTRRDGAASGASAAISTSVQAKTPAERKEEMVREFRRWAGYTPCSMRGPGSHGTGLVDPSTAEATATAPPASGHEGGTVGRRPGRGRQSTAVLLRAESGVGAPAAEA 741
            HAVARGLQSDTWLLGVNLARNGITDHGAALLSVCLQHNATLCALVLDGNPEVGHGAERRITEELETRSMMPEAVLEEPEVVLTLASWGFSAHTGVDRDLSPPTRPAAAVA SGSVVSEISQ SFG   XXX  XX               A AAI TSVQAKTPAERKEEMVREFRRWAGYT CSMR PGS G GL DPST EATATAPPASGHEGGTVGRRPGRGR+STAVLLRAESG GAPAAEA
Sbjct:  314 HAVARGLQSDTWLLGVNLARNGITDHGAALLSVCLQHNATLCALVLDGNPEVGHGAERRITEELETRSMMPEAVLEEPEVVLTLASWGFSAHTGVDRDLSPPTRPAAAVAGSGSVVSEISQDSFGXXXXXXXXXXXXXXXXXXXX-XXXXAIAAIPTSVQAKTPAERKEEMVREFRRWAGYTACSMRRPGSDGIGLADPSTTEATATAPPASGHEGGTVGRRPGRGRRSTAVLLRAESGAGAPAAEA 559
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6541.17357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K7P8_9PHAE2.040e-13491.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBL5_ECTSI2.530e-12587.04Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6541contigEcto-sp13_S_contig6541:2108..5882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score388.3
Seed ortholog evalue2.8e-105
Seed eggNOG ortholog2880.D8LBL5
Model size749
KEGG koko:K20865
KEGG Pathwayko04621,map04621
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
Cds size747
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463902.1819-CDS-Ecto-sp13_S_contig6541:2108..23691681463902.1819-CDS-Ecto-sp13_S_contig6541:2108..2369Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6541 2109..2369 -
1681463902.192645-CDS-Ecto-sp13_S_contig6541:2919..31891681463902.192645-CDS-Ecto-sp13_S_contig6541:2919..3189Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6541 2920..3189 -
1681463902.201747-CDS-Ecto-sp13_S_contig6541:5108..52851681463902.201747-CDS-Ecto-sp13_S_contig6541:5108..5285Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6541 5109..5285 -
1681463902.2108386-CDS-Ecto-sp13_S_contig6541:5843..58821681463902.2108386-CDS-Ecto-sp13_S_contig6541:5843..5882Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6541 5844..5882 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6541.17357.1prot_Ecto-sp13_S_contig6541.17357.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6541 2109..5882 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6541.17357.1

>prot_Ecto-sp13_S_contig6541.17357.1 ID=prot_Ecto-sp13_S_contig6541.17357.1|Name=mRNA_Ecto-sp13_S_contig6541.17357.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=249bp
HAVARGLQSDTWLLGVNLARNGITDHGAALLSVCLQHNATLCALVLDGNP
EVGHGAERRITEELETRSMMPEAVLEEPEVVLTLASWGFSAHTGVDRDLS
PPTRPAAAVAESGSVVSEISQGSFGGGGGGGNLGGDGFGGDTRRDGAASG
ASAAISTSVQAKTPAERKEEMVREFRRWAGYTPCSMRGPGSHGTGLVDPS
TAEATATAPPASGHEGGTVGRRPGRGRQSTAVLLRAESGVGAPAAEASW
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mRNA from alignment at Ecto-sp13_S_contig6541:2108..5882-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6541.17357.1 ID=mRNA_Ecto-sp13_S_contig6541.17357.1|Name=mRNA_Ecto-sp13_S_contig6541.17357.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3775bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6541:2108..5882- (Ectocarpus species13 EcNAP12_S_4_19m)
CACGCCGTCGCGAGGGGCTTGCAGAGCGACACCTGGCTGGTGGGTTCGGG
TGGGAGGTGTATGGACGCTCTGGGGTTTCCAGAACGGGCGGGGGGGGGAG
GGGGGAGGAGCGTTTTTTTTTTGCCTCTTCTTTCTTTTTCTCAATTGGTA
TCCATCGTGTCTCTGTTTTTTTCTTGTTGGTCGCATGGGGTGGAGGCGCT
GCGTGGAGCTGAAGGGGGAGAGCGACCGATAAATACCATCGGGAGCTAGT
TTGCTTGCAGCTTAAGCGCAGCCGGACTGCGGGGGCGGAGAGGATATATG
GCGGCAGCGTTCCATTGAGTTGGTTCGCTGTAAGTTCAGCGAAAAAGCCG
GGATCACCACTGTTTGGTGGTACTTCTGTGTTCAACGCCGTAAGCGTCCA
TTACGCACACGTCCCATCTACATCCCGATAGGGAAATATATCGCTGGCTC
ATGCTCACGTAACTTCATGTGCACTTGTGGCTCGAATTGACCTCCCAAGC
CAAGGCCGGTTGGCGGTGGTAGATAGTCACATGCGTGCTCACCCCTTCCC
ATCGCCCTGGTGTGTTCTTCGATTGTTTCCCCGTTCGCCGCCGCCAGCTG
GGTGTGAACCTGGCGCGCAACGGGATCACCGACCACGGGGCGGCCCTGCT
GTCGGTGTGCCTGCAGCACAACGCCACGCTGTGCGCCCTCGTCCTGGACG
GCAACCCGGAGGTCGGGCACGGAGCGGAGAGGCGCATCACGGAGGAGCTG
GAGACGAGGAGCATGATGCCGGAGGTACGAACCGCCGAAACCATACCTGC
TGCTGCGTGCGCACCATTTGTTTGAGGGGTGGGAGTAGGTTTTGTTACGC
GGTGGATGGTTTTTGTCGATTCTGGGCGTGTGTCTGCTGTGTGTGTGTGG
CACGATGCCGTGCGTGGCGATGGTGTTAAAACAGCTAAAACTTCACGCTT
CGCTCACCTTTTTTTCGCTGAGTATGGTTCGTCGGTAAACCGGTTCCGCG
GGACTGAAGGTTTACGTAGAGCTGGGCTTGCTTGCATCTGCTTTTCATCC
TTGATGGTCTCATTATTCATATCATACGGAAATTGACAGGTAGAAGGCCA
GCTTGCTGGAGACCTCCCAAGTAGACGTAGGTTGTCACAGCTTGTCTTAC
TGTCTTACCCGGCAGTGTTTGCCGCGCGAACGGTATTCAACCACTCTCTT
GACACAGGAAACGCCGATGACGCATGTGAAAAATGCCGAAAAAATGTTTG
TCAGCCATTGATCAAGGGGCTAGAGTCCCTCCAAATAATCTGAGCTTCTT
TGCCATGCCAGACAAAGGGTGACTTGGCTTCAGTATTAAAAGGGTCCCCA
AGTTTTGATTTGGGGACACTTTTAATACTGAAGCCAAGTCAGCAAATTTT
CCAGTACCAGGCGATGTACAGTTTTGCGAAATGGGGGGGGGCACGCGGTT
TGGGAGATGTGTACAGCAAGTCAGAGGCCCACGAGAGGCATTACACAGCA
TATCACACCGCGTACCACCTCAGCCAAGCATGATCGACCAAGGGTTCTCA
CGTACGTTGCATACAGCGGAGCCTAGGGTGACTACAGTGCGGTAAATAGG
CCTTTGAGTGCTGTGTCCCAAAGTGTCCCCATTTGAGGTTCCAGTATTAG
GAGGGTTAACTGGCTCTTATTGTATTTTCCACACGGGAGAGTTGAGAACT
CTCCGGGTTTTGATAGCTTTCGGTGAAAACGTCATGAAGAGAAATGTTGA
GGTTGTCCTTTCTTCGTAGATGTGGAATGACCGCCGCCTCTTCGACACCT
CTAGAGGTCTAGAGGGCAAACAGGGAAGTATCAGACACCTCAATTCGTGT
TTACGGCCCCCATACCCGTAGCGTCGGGACCAGCACGAACGTTGCATGCA
TCCGTACCCAGACAGCCACGGCCCATCGTAGTATTTTGTGCAGATTCTGC
GCGAAGCCGCCATGACAATGGTCTACTTGGACGGGTTTGGATGAGTGCCT
GTGTTTTCTGCGTGGGTGAGTGGTCTCGGCGGTAGAGTCGTGCGTGTGGC
AGGCAGCTTTGTTCGTCCTCGCGGCAACAGCGCCAGCATACTCCCAAGCA
TAAAGAGAACCGGGGTTCCTTCGACCCCGTCGGGTCGGTGGTGAGACGAG
CGTCTACGGTAGCTGCTCATCTCTCGGACACCTATGGAGATGTTCTGAGA
ACGTATGCATACGACGTGCTCGTGATACGAGGGATGGCTGTGTAGACGGA
GATATGGGAGAGAAGTTTGGAGTGAAATGAACCTGAGGCACCGCTGGCTA
TGGCTCGTCCAGTTGCCTGGCGAGAGGTGAAGTGACGCATACTTGCGCCA
GATACTGTAGGATAGGATAGCGCTGGCTAGCCACCGAGAAACGAAAAGTG
CCGAAGATACCACAGAGAATAGAAAGCCCTACCACGCAAAACCTAAAGAT
CACAGATGTTTGTCCATCGCTTCTACACAGGGCATCTGAGCATCAATTCA
ACCAAGAAAAGGATCATTGCGCCCCCTCCCAAACTTCCGGATGCTGGCGA
GCAACGATCAACACAAGGATGTATCATCATGCCCTTCCCCCCCCCCCCCA
GATCCCTCTCAACTCCTACGTGTCGCCACCGGGTTCACCTCCGCGATCTC
TATCTTGGCTGCCGGTTCATCGTCTCAAATCGCACCGAAACAGGCGGTTC
TTGAAGAACCGGAGGTTGTGCTGACCCTGGCTTCGTGGGGTTTCTCTGCC
CACACGGGCGTCGACCGAGACTTGTCGCCTCCGACCCGGCCAGCTGCTGC
AGTGGCCGAAAGCGGCTCGGTGGTGTCCGAGATTTCTCAGGGCAGTTTTG
GCGGCGGCGGCGGCGGCGGTAACTTGGGCGGTGATGGGTTTGGAGGCGAT
ACCAGGAGGGATGGCGCTGCTAGTGGCGCGTCCGCGGCGATTTCCACCTC
TGTCCAAGCTAAGGTGCGTTTCGTCATATCTTTTAGCTTGTGTCCCAGTT
AAGTGTACTGTCTGGAGATTTGAATGAGGTCAACGAGAGGGTGACTTCTC
ACCGAAATGGTGCGGAAGCTCCATTGCCCGTTTTCCATGATCCTGTTCGA
GCTGATACCTGCCGTAGCCGAGTCTTTTTTACGTTTTGTCCTCCCTGTGC
GGGTACGATGCTCGTCGTGGTGCTTCAGAGACCATGCCGCCGAACGACGA
TCGCGTGTGGTCGATTGCGAAGCAAGGCAAGGGGAAGGAAGAGGAGTACT
TGTACGAAATGGGCGTGGCGTGGTATGTACGAAGTACACATCAGGAGCAT
CATATGCCATCCAGGAAGATAACAATACAAGCCATTGTCAGGACTACCTT
CGACCACCGTGTACAAAGGCATCCGCGAAACAGGAGACTGTCGTTGTCCT
TCTGCATGTTGCCACCGACACGAATCGAACGAACATGCATGTCTGCGGCC
TATATCAGAATCTACTCCCCCCCCCACCCCTCCCGTGCGCTCCCGTCTTC
CGGCTTCTCCCAGACACCCGCCGAACGCAAGGAAGAGATGGTGCGCGAAT
TCAGGCGATGGGCGGGGTATACCCCTTGCTCGATGCGGGGCCCCGGTTCC
CACGGCACCGGTCTCGTAGACCCTTCAACGGCAGAAGCAACGGCAACAGC
GCCGCCAGCGTCGGGGCACGAGGGTGGCACGGTAGGCCGCCGGCCCGGAC
GGGGTCGCCAGAGCACCGCCGTTCTCCTGCGGGCAGAGAGCGGGGTGGGG
GCGCCGGCGGCGGAGGCTTCATGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6541:2108..5882-

>mRNA_Ecto-sp13_S_contig6541.17357.1 ID=mRNA_Ecto-sp13_S_contig6541.17357.1|Name=mRNA_Ecto-sp13_S_contig6541.17357.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=747bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6541:2108..5882- (Ectocarpus species13 EcNAP12_S_4_19m)
CACGCCGTCGCGAGGGGCTTGCAGAGCGACACCTGGCTGCTGGGTGTGAA
CCTGGCGCGCAACGGGATCACCGACCACGGGGCGGCCCTGCTGTCGGTGT
GCCTGCAGCACAACGCCACGCTGTGCGCCCTCGTCCTGGACGGCAACCCG
GAGGTCGGGCACGGAGCGGAGAGGCGCATCACGGAGGAGCTGGAGACGAG
GAGCATGATGCCGGAGGCGGTTCTTGAAGAACCGGAGGTTGTGCTGACCC
TGGCTTCGTGGGGTTTCTCTGCCCACACGGGCGTCGACCGAGACTTGTCG
CCTCCGACCCGGCCAGCTGCTGCAGTGGCCGAAAGCGGCTCGGTGGTGTC
CGAGATTTCTCAGGGCAGTTTTGGCGGCGGCGGCGGCGGCGGTAACTTGG
GCGGTGATGGGTTTGGAGGCGATACCAGGAGGGATGGCGCTGCTAGTGGC
GCGTCCGCGGCGATTTCCACCTCTGTCCAAGCTAAGACACCCGCCGAACG
CAAGGAAGAGATGGTGCGCGAATTCAGGCGATGGGCGGGGTATACCCCTT
GCTCGATGCGGGGCCCCGGTTCCCACGGCACCGGTCTCGTAGACCCTTCA
ACGGCAGAAGCAACGGCAACAGCGCCGCCAGCGTCGGGGCACGAGGGTGG
CACGGTAGGCCGCCGGCCCGGACGGGGTCGCCAGAGCACCGCCGTTCTCC
TGCGGGCAGAGAGCGGGGTGGGGGCGCCGGCGGCGGAGGCTTCATGG
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