prot_Ecto-sp13_S_contig654.17353.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig654.17353.1
Unique Nameprot_Ecto-sp13_S_contig654.17353.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length46
Homology
BLAST of mRNA_Ecto-sp13_S_contig654.17353.1 vs. uniprot
Match: D7FWG1_ECTSI (Sm protein F n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWG1_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 7.520e-25
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0
Query:    1 MNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKAD 46
            MNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKAD
Sbjct:   41 MNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKAD 86          
BLAST of mRNA_Ecto-sp13_S_contig654.17353.1 vs. uniprot
Match: A0A6P9F5Z8_JUGRE (Sm protein F n=4 Tax=Mesangiospermae TaxID=1437183 RepID=A0A6P9F5Z8_JUGRE)

HSP 1 Score: 74.7 bits (182), Expect = 1.740e-16
Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 0
Query:    1 MNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKAD 46
            MNL L +TEEY+DG+F GNLG++LIRCNNVLYLRGV EDE   +AD
Sbjct:   40 MNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEEIEEAD 85          
BLAST of mRNA_Ecto-sp13_S_contig654.17353.1 vs. uniprot
Match: A0A176VZF1_MARPO (Sm protein F n=3 Tax=Viridiplantae TaxID=33090 RepID=A0A176VZF1_MARPO)

HSP 1 Score: 74.7 bits (182), Expect = 1.740e-16
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 0
Query:    1 MNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKAD 46
            MNL L STEEY+DG+F GNLG+VLIRCNNVLYLRGV EDE   + D
Sbjct:   41 MNLQLASTEEYIDGQFTGNLGEVLIRCNNVLYLRGVPEDEDAVEED 86          
BLAST of mRNA_Ecto-sp13_S_contig654.17353.1 vs. uniprot
Match: A0A7J6WA49_THATH (Sm protein F n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6WA49_THATH)

HSP 1 Score: 74.7 bits (182), Expect = 2.150e-16
Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 0
Query:    1 MNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKAD 46
            MNL L +TEEY+DG+F GNLG++LIRCNNVLYLRGV EDE   +AD
Sbjct:   48 MNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEEIEEAD 93          
BLAST of mRNA_Ecto-sp13_S_contig654.17353.1 vs. uniprot
Match: A0A804J679_MUSAM (Sm protein F n=10 Tax=Mesangiospermae TaxID=1437183 RepID=A0A804J679_MUSAM)

HSP 1 Score: 74.3 bits (181), Expect = 2.410e-16
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 0
Query:    1 MNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKAD 46
            MNL L +TEEYVDG+F GNLG++LIRCNNVLYLRGV EDE    AD
Sbjct:   41 MNLQLANTEEYVDGQFTGNLGEILIRCNNVLYLRGVPEDEEIEDAD 86          
BLAST of mRNA_Ecto-sp13_S_contig654.17353.1 vs. uniprot
Match: A0A7I8LGH6_SPIIN (Sm protein F n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8LGH6_SPIIN)

HSP 1 Score: 74.3 bits (181), Expect = 2.540e-16
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 0
Query:    1 MNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKAD 46
            MNL L +TEEYVDGEF GNLG++LIRCNNVLYLRGV ED+    AD
Sbjct:   43 MNLQLANTEEYVDGEFTGNLGEILIRCNNVLYLRGVPEDDEIEDAD 88          
BLAST of mRNA_Ecto-sp13_S_contig654.17353.1 vs. uniprot
Match: A0A835M2E4_9MAGN (Sm protein F n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835M2E4_9MAGN)

HSP 1 Score: 74.3 bits (181), Expect = 2.600e-16
Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 0
Query:    1 MNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKAD 46
            MNL L +TEEY+DG+F GNLG++LIRCNNVLYLRGV EDE   +AD
Sbjct:   42 MNLQLANTEEYIDGKFTGNLGEILIRCNNVLYLRGVPEDEDITEAD 87          
BLAST of mRNA_Ecto-sp13_S_contig654.17353.1 vs. uniprot
Match: A0A2N9FFJ8_FAGSY (Sm protein F n=2 Tax=Fagaceae TaxID=3503 RepID=A0A2N9FFJ8_FAGSY)

HSP 1 Score: 73.9 bits (180), Expect = 3.700e-16
Identity = 32/46 (69.57%), Postives = 39/46 (84.78%), Query Frame = 0
Query:    1 MNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKAD 46
            MNL L +TEEY+DG+F GNLG++LIRCNNV+YLRGV EDE   +AD
Sbjct:   42 MNLQLANTEEYIDGQFTGNLGEILIRCNNVIYLRGVPEDEEIEEAD 87          
BLAST of mRNA_Ecto-sp13_S_contig654.17353.1 vs. uniprot
Match: A0A5P1EWT9_ASPOF (Sm protein F n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1EWT9_ASPOF)

HSP 1 Score: 73.9 bits (180), Expect = 4.210e-16
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 0
Query:    1 MNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKAD 46
            MNL L +TEEY+DG+F GNLG++LIRCNNVLYLRGV EDE    AD
Sbjct:   49 MNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEEIEDAD 94          
BLAST of mRNA_Ecto-sp13_S_contig654.17353.1 vs. uniprot
Match: B9RUD7_RICCO (Sm protein F n=1 Tax=Ricinus communis TaxID=3988 RepID=B9RUD7_RICCO)

HSP 1 Score: 72.8 bits (177), Expect = 5.280e-16
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 0
Query:    1 MNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKAD 46
            MNL L +TEEY+DG+F GNLG++LIRCNNVLYLRGV EDE    AD
Sbjct:   15 MNLQLGNTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEDIEDAD 60          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig654.17353.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWG1_ECTSI7.520e-25100.00Sm protein F n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A6P9F5Z8_JUGRE1.740e-1671.74Sm protein F n=4 Tax=Mesangiospermae TaxID=1437183... [more]
A0A176VZF1_MARPO1.740e-1673.91Sm protein F n=3 Tax=Viridiplantae TaxID=33090 Rep... [more]
A0A7J6WA49_THATH2.150e-1671.74Sm protein F n=1 Tax=Thalictrum thalictroides TaxI... [more]
A0A804J679_MUSAM2.410e-1673.91Sm protein F n=10 Tax=Mesangiospermae TaxID=143718... [more]
A0A7I8LGH6_SPIIN2.540e-1673.91Sm protein F n=1 Tax=Spirodela intermedia TaxID=51... [more]
A0A835M2E4_9MAGN2.600e-1671.74Sm protein F n=1 Tax=Coptis chinensis TaxID=261450... [more]
A0A2N9FFJ8_FAGSY3.700e-1669.57Sm protein F n=2 Tax=Fagaceae TaxID=3503 RepID=A0A... [more]
A0A5P1EWT9_ASPOF4.210e-1671.74Sm protein F n=1 Tax=Asparagus officinalis TaxID=4... [more]
B9RUD7_RICCO5.280e-1671.74Sm protein F n=1 Tax=Ricinus communis TaxID=3988 R... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 1..33
e-value: 7.9E-7
score: 28.7
NoneNo IPR availableGENE3D2.30.30.100coord: 1..46
e-value: 4.3E-12
score: 47.4
NoneNo IPR availablePANTHERPTHR11021:SF5coord: 1..42
IPR016487Sm-like protein Lsm6/SmFPANTHERPTHR11021SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-Fcoord: 1..42
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 1..38

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig654contigEcto-sp13_S_contig654:21192..21329 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig654.17353.1mRNA_Ecto-sp13_S_contig654.17353.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig654 21192..21356 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig654.17353.1 ID=prot_Ecto-sp13_S_contig654.17353.1|Name=mRNA_Ecto-sp13_S_contig654.17353.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=46bp
MNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKAD
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR016487Lsm6/sSmF
IPR010920LSM_dom_sf