mRNA_Ecto-sp13_S_contig65300.17341.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig65300.17341.1
Unique NamemRNA_Ecto-sp13_S_contig65300.17341.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig65300.17341.1 vs. uniprot
Match: D7G2C1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C1_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 1.350e-29
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 1 
Query:    4 QMDLDANQSTLEAEPTHPARRSYWVLRLVRTTILYGGHLTPKLYAPKEVWAQVG 165
            QMDLDANQSTLEAEPTHPARRSYWVLRLVRTTILYGGHLTPKLYAPKEVW QVG
Sbjct:   96 QMDLDANQSTLEAEPTHPARRSYWVLRLVRTTILYGGHLTPKLYAPKEVWTQVG 149
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BLAST of mRNA_Ecto-sp13_S_contig65300.17341.1 vs. uniprot
Match: A0A6H5L4U3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4U3_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 3.400e-27
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 1 
Query:    4 QMDLDANQSTLEAEPTHPARRSYWVLRLVRTTILYGGHLTPKLYAPKEVWAQVG 165
            QMDLDA+QSTLEAEPTHPARRSYWVLRLVRTTILYGG+LTPKLYAPKEVW QVG
Sbjct:  219 QMDLDAHQSTLEAEPTHPARRSYWVLRLVRTTILYGGYLTPKLYAPKEVWTQVG 272
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig65300.17341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2C1_ECTSI1.350e-2998.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4U3_9PHAE3.400e-2794.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig65300contigEcto-sp13_S_contig65300:262..441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size180
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size174
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463900.8669906-UTR-Ecto-sp13_S_contig65300:261..2671681463900.8669906-UTR-Ecto-sp13_S_contig65300:261..267Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig65300 262..267 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463900.8760965-CDS-Ecto-sp13_S_contig65300:267..4411681463900.8760965-CDS-Ecto-sp13_S_contig65300:267..441Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig65300 268..441 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig65300.17341.1prot_Ecto-sp13_S_contig65300.17341.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig65300 268..441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig65300.17341.1

>prot_Ecto-sp13_S_contig65300.17341.1 ID=prot_Ecto-sp13_S_contig65300.17341.1|Name=mRNA_Ecto-sp13_S_contig65300.17341.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp
MDLDANQSTLEAEPTHPARRSYWVLRLVRTTILYGGHLTPKLYAPKEVWA
QVGFSCCS
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mRNA from alignment at Ecto-sp13_S_contig65300:262..441+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig65300.17341.1 ID=mRNA_Ecto-sp13_S_contig65300.17341.1|Name=mRNA_Ecto-sp13_S_contig65300.17341.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65300:262..441+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTTCAGATGGATTTGGATGCGAACCAATCGACCTTGGAAGCCGAACCGAC
ACACCCAGCGAGGAGATCCTATTGGGTCCTGAGGCTCGTGCGAACCACCA
TTTTGTACGGGGGTCACCTGACGCCCAAGCTCTACGCGCCCAAGGAAGTG
TGGGCGCAGGTGGGTTTCAGCTGCTGCTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig65300:262..441+

>mRNA_Ecto-sp13_S_contig65300.17341.1 ID=mRNA_Ecto-sp13_S_contig65300.17341.1|Name=mRNA_Ecto-sp13_S_contig65300.17341.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65300:262..441+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATTTGGATGCGAACCAATCGACCTTGGAAGCCGAACCGACACACCC
AGCGAGGAGATCCTATTGGGTCCTGAGGCTCGTGCGAACCACCATTTTGT
ACGGGGGTCACCTGACGCCCAAGCTCTACGCGCCCAAGGAAGTGTGGGCG
CAGGTGGGTTTCAGCTGCTGCTCC
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