mRNA_Ecto-sp13_S_contig6523.17332.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6523.17332.1
Unique NamemRNA_Ecto-sp13_S_contig6523.17332.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6523.17332.1 vs. uniprot
Match: A0A6H5KZY7_9PHAE (SnoaL-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZY7_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 8.300e-64
Identity = 99/101 (98.02%), Postives = 101/101 (100.00%), Query Frame = 1 
Query:    1 MEKILLDYDEDSVVTTYDQTADKKSVFKGVEGARTLFEGLFEALSDQSDLAAPVIDVSEESNMVFLVWRCPASGFLDATDTFTHNDKTKKISRQNVAYKTG 303
            ME+ILLDYDEDSVVTTYDQTADKK+VFKGVEGARTLFEGLFEALSDQSDLAAPVIDVSEESNMVFLVWRCPASGFLDATDTFTHNDKTKKISRQNVAYKTG
Sbjct:   75 MERILLDYDEDSVVTTYDQTADKKTVFKGVEGARTLFEGLFEALSDQSDLAAPVIDVSEESNMVFLVWRCPASGFLDATDTFTHNDKTKKISRQNVAYKTG 175
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BLAST of mRNA_Ecto-sp13_S_contig6523.17332.1 vs. uniprot
Match: D7G623_ECTSI (SnoaL-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G623_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 7.520e-63
Identity = 97/101 (96.04%), Postives = 100/101 (99.01%), Query Frame = 1 
Query:    1 MEKILLDYDEDSVVTTYDQTADKKSVFKGVEGARTLFEGLFEALSDQSDLAAPVIDVSEESNMVFLVWRCPASGFLDATDTFTHNDKTKKISRQNVAYKTG 303
            M++ILLDYDEDSVVTTYDQTAD+ SVFKGVEGARTLFEGLFEALSDQSDLAAPVIDVSEESNMVFLVWRCPASGFLDATDTFTHNDKTKKISRQNVAYKTG
Sbjct:   24 MDRILLDYDEDSVVTTYDQTADRISVFKGVEGARTLFEGLFEALSDQSDLAAPVIDVSEESNMVFLVWRCPASGFLDATDTFTHNDKTKKISRQNVAYKTG 124
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BLAST of mRNA_Ecto-sp13_S_contig6523.17332.1 vs. uniprot
Match: A0A8J2SYK6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SYK6_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.890e-21
Identity = 51/100 (51.00%), Postives = 67/100 (67.00%), Query Frame = 1 
Query:    1 MEKILLDYDEDSVVTTYDQTADKKSVFKGVEGARTLFEGLFEALSDQSDLAAPVIDVSE----ESNMVFLVWRCPASGFLDATDTFTHNDKTKKISRQNV 288
            ++K+L DY E SV+  Y+Q  D+   FKG++G +  F GLF+ LSD S LAAP I V E    ++ MVFLVWRCP+SG+  ATDTF   D   KI++QNV
Sbjct:  155 VDKVLKDYTEKSVIKVYNQVTDELVEFKGLKGVKECFTGLFKDLSDLSGLAAPAIRVEEATEDKAGMVFLVWRCPSSGYNHATDTFLF-DAAGKIAKQNV 253
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6523.17332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KZY7_9PHAE8.300e-6498.02SnoaL-like domain-containing protein n=1 Tax=Ectoc... [more]
D7G623_ECTSI7.520e-6396.04SnoaL-like domain-containing protein n=1 Tax=Ectoc... [more]
A0A8J2SYK6_9STRA2.890e-2151.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6523contigEcto-sp13_S_contig6523:4045..4646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score92.4
Seed ortholog evalue1.3e-16
Seed eggNOG ortholog227086.JGI_V11_85307
Model size306
KEGG rclassRC01018,RC01906,RC01907,RC02441,RC02467,RC02468,RC02674,RC02675,RC02686
KEGG koko:K01061,ko:K14515,ko:K18272
KEGG ReactionR03893,R05510,R05511,R06835,R06838,R08120,R08121,R09136,R09220,R09222
KEGG Pathwayko00361,ko00364,ko00623,ko01100,ko01110,ko01120,ko01130,ko04016,ko04075,map00361,map00364,map00623,map01100,map01110,map01120,map01130,map04016,map04075
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Dienelactone hydrolase family
EggNOG OGsCOG0412@1,KOG3043@2759
Ec32 ortholog descriptionPolyketide cyclase SnoaL-like domain
Ec32 orthologEc-11_004820.1
EC3.1.1.45
Cds size306
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463900.083893-CDS-Ecto-sp13_S_contig6523:4044..42571681463900.083893-CDS-Ecto-sp13_S_contig6523:4044..4257Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6523 4045..4257 -
1681463900.09725-CDS-Ecto-sp13_S_contig6523:4553..46461681463900.09725-CDS-Ecto-sp13_S_contig6523:4553..4646Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6523 4554..4646 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6523.17332.1prot_Ecto-sp13_S_contig6523.17332.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6523 4045..4646 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6523.17332.1

>prot_Ecto-sp13_S_contig6523.17332.1 ID=prot_Ecto-sp13_S_contig6523.17332.1|Name=mRNA_Ecto-sp13_S_contig6523.17332.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=102bp
MEKILLDYDEDSVVTTYDQTADKKSVFKGVEGARTLFEGLFEALSDQSDL
AAPVIDVSEESNMVFLVWRCPASGFLDATDTFTHNDKTKKISRQNVAYKT
G*
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mRNA from alignment at Ecto-sp13_S_contig6523:4045..4646-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6523.17332.1 ID=mRNA_Ecto-sp13_S_contig6523.17332.1|Name=mRNA_Ecto-sp13_S_contig6523.17332.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=602bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6523:4045..4646- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGAAGATCCTGCTAGACTACGATGAGGACAGCGTGGTTACGACCTA
TGACCAGACAGCTGACAAGAAATCAGTGTTCAAAGGGGTCGAGGTGCGGA
GTCCCCACATGCTTCTCTGCTTCCCGCTTTCAGGGCTGGATTTCTCCGCG
TGCATGAGCTAGGTAGCTGCATGCAATGGTGGACCGCCATTTCATTGCTT
GATGGTGCGATGCGGAAGGACCGCGCGTCGAGGTTCTCTGAGCCTCAACA
TAGGACGAATAGATGCGACGGTTCAAGAACCGGTGCAGTCTTATCCTCTG
TACAGCGTTATTCACGTGTTCGTCGTAGTTCCGACCCCTTCCCCTTTTTC
ATGCGGTGACTGGTCGACTAACACCTATCTGTCGTGCAGGGAGCGCGCAC
GCTCTTCGAAGGGCTCTTCGAAGCTTTGTCTGATCAGAGCGACTTGGCAG
CTCCGGTGATCGACGTGTCAGAAGAAAGCAACATGGTGTTCCTTGTCTGG
AGATGCCCCGCCTCTGGCTTCCTCGACGCCACGGACACCTTCACGCACAA
CGACAAGACCAAGAAGATTAGCCGCCAAAACGTAGCTTACAAGACCGGCT
GA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6523:4045..4646-

>mRNA_Ecto-sp13_S_contig6523.17332.1 ID=mRNA_Ecto-sp13_S_contig6523.17332.1|Name=mRNA_Ecto-sp13_S_contig6523.17332.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6523:4045..4646- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGAAGATCCTGCTAGACTACGATGAGGACAGCGTGGTTACGACCTA
TGACCAGACAGCTGACAAGAAATCAGTGTTCAAAGGGGTCGAGGGAGCGC
GCACGCTCTTCGAAGGGCTCTTCGAAGCTTTGTCTGATCAGAGCGACTTG
GCAGCTCCGGTGATCGACGTGTCAGAAGAAAGCAACATGGTGTTCCTTGT
CTGGAGATGCCCCGCCTCTGGCTTCCTCGACGCCACGGACACCTTCACGC
ACAACGACAAGACCAAGAAGATTAGCCGCCAAAACGTAGCTTACAAGACC
GGCTGA
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