mRNA_Ecto-sp13_S_contig6520.17328.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6520.17328.1
Unique NamemRNA_Ecto-sp13_S_contig6520.17328.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6520.17328.1 vs. uniprot
Match: A0A6H5KKD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD6_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 2.830e-5
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 1 
Query:  205 PQVSEEEAEPSTAKTPPSKGKGTKKSTP 288
            PQVSEEEAEPSTAKTPPSKGKG KKSTP
Sbjct:  158 PQVSEEEAEPSTAKTPPSKGKGAKKSTP 185
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6520.17328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KKD6_9PHAE2.830e-596.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6520contigEcto-sp13_S_contig6520:373..1237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size350
Hectar predicted targeting categoryother localisation
Exons2
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463899.6696014-CDS-Ecto-sp13_S_contig6520:374..5531681463899.6696014-CDS-Ecto-sp13_S_contig6520:374..553Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6520 375..553 -
1681463899.683346-CDS-Ecto-sp13_S_contig6520:1068..12371681463899.683346-CDS-Ecto-sp13_S_contig6520:1068..1237Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6520 1069..1237 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6520.17328.1prot_Ecto-sp13_S_contig6520.17328.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6520 375..1237 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6520.17328.1

>prot_Ecto-sp13_S_contig6520.17328.1 ID=prot_Ecto-sp13_S_contig6520.17328.1|Name=mRNA_Ecto-sp13_S_contig6520.17328.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp
APAAPAAPAAPAAPTAVGKGGSGGGGASADDDDAMSLDSGDGEDDGGSSS
DAGESDESGEEDEEEESSPQVSEEEAEPSTAKTPPSKGKGTKKSTPAPKA
KATTTTNTVAASASKS
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mRNA from alignment at Ecto-sp13_S_contig6520:373..1237-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6520.17328.1 ID=mRNA_Ecto-sp13_S_contig6520.17328.1|Name=mRNA_Ecto-sp13_S_contig6520.17328.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=865bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6520:373..1237- (Ectocarpus species13 EcNAP12_S_4_19m)
GCACCTGCGGCACCTGCGGCTCCTGCGGCTCCTGCGGCTCCAACGGCGGT
TGGCAAGGGGGGTAGCGGCGGTGGTGGGGCTTCGGCAGACGACGATGACG
CGATGTCGCTCGATAGCGGTGACGGGGAGGATGACGGGGGTTCCAGCTCT
GACGCCGGCGAGTCGGACGGTGAGCGCGTCGTGGAAGGCAACTAAATGTT
CACTGCTGTTTTGGGATTGTTCCTTGCGTCGGGTAGAGGAGAGGGGCGCT
TGGTTGTTCTTATTGCTCTTTGGGTAGTAAGCGGCAACTGGGCTCTAGTG
TTGTTGTCCTCCTCCCTTGCTGCCTGCTGCCGCTTCGGCCGTGTGTCTCC
TTTAAGATTGGTGTGTCGGCGACGTCCCTAAGCAGAAGCTACCTCCGTGT
GAGCGCACGAGTGTGTCGCGATATCGGTTGTTTATTGCGCCAGATTGTCG
TCTCTTGTCCAATCTGACGTGGGCGTGGTTCTCCCGAGCGTGTGGGCAGA
GAGCTGGGTGCTCGGTGTTCGGGCCTGCGCCCTGTTATACAGACGAGGCC
TCTCTATCTACCTCCCAAGGCAATCACGATGACAGGCACAGCTACAAGCA
AGGCACATGACCAACATCAGAAAGCCAAACTGGTAACCACTACGCGCCCC
CACCCCACCCTCCTGCTGCCTCCACCCTGAGCAGAGTCGGGCGAAGAAGA
CGAGGAAGAAGAGAGTTCGCCGCAGGTATCCGAAGAGGAGGCCGAACCAA
GCACGGCGAAAACGCCGCCCTCGAAAGGAAAGGGGACCAAGAAGTCCACC
CCCGCCCCGAAGGCGAAAGCAACCACCACTACCAACACAGTAGCGGCGTC
GGCCTCCAAGTCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6520:373..1237-

>mRNA_Ecto-sp13_S_contig6520.17328.1 ID=mRNA_Ecto-sp13_S_contig6520.17328.1|Name=mRNA_Ecto-sp13_S_contig6520.17328.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6520:373..1237- (Ectocarpus species13 EcNAP12_S_4_19m)
GCACCTGCGGCACCTGCGGCTCCTGCGGCTCCTGCGGCTCCAACGGCGGT
TGGCAAGGGGGGTAGCGGCGGTGGTGGGGCTTCGGCAGACGACGATGACG
CGATGTCGCTCGATAGCGGTGACGGGGAGGATGACGGGGGTTCCAGCTCT
GACGCCGGCGAGTCGGACGAGTCGGGCGAAGAAGACGAGGAAGAAGAGAG
TTCGCCGCAGGTATCCGAAGAGGAGGCCGAACCAAGCACGGCGAAAACGC
CGCCCTCGAAAGGAAAGGGGACCAAGAAGTCCACCCCCGCCCCGAAGGCG
AAAGCAACCACCACTACCAACACAGTAGCGGCGTCGGCCTCCAAGTCT
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