mRNA_Ecto-sp13_S_contig65171.17321.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig65171.17321.1
Unique NamemRNA_Ecto-sp13_S_contig65171.17321.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig65171.17321.1 vs. uniprot
Match: A0A1Q8G1D9_9PROT (Peptidase n=2 Tax=Maricaulis TaxID=74317 RepID=A0A1Q8G1D9_9PROT)

HSP 1 Score: 469 bits (1206), Expect = 3.150e-160
Identity = 226/253 (89.33%), Postives = 239/253 (94.47%), Query Frame = 1
Query:    1 HEDIAAVMGQLGYASIFGTSVQRNEGDPSHYILYLNQGGLHLPTRDYYLLEDDRFVEYREAYRAYIADVFGFLGLADGEARADRIIALETAMAETHWTPAQTRDRVATYNPASLEEVRALGAGFDWDAFFETADYADQENFIVSQTSAIEGLAAVFAETPVETWRDYLTFSYVNSNTNLLSEEIYNRSFDFWGRTLGGAQEPRPRDRRAIQFVNGNLGQAIGQIYVDQYFPPDHKAQMEELVDYLRRALTERI 759
            H+DIAAVMG LG+ASIFGTSVQR+EGDPSHYILYLNQGGLHLPTRDYYLLED+RFVEYR AYRAYIADVFGFLGL DGEARADRIIALETAMA  HWTPA++RDRVATYNP SL E+R L  GFDWDAFFETADYADQENFIVSQTSAI GLAAVFA+TPVETWRDYLTF+YVNSNTNLLSEEIYNRSFDFWGRT+ GAQEPRPRDRRAIQFVNGNLGQAIGQIYV+QYFPP+HK QM+ELVDYLRRAL ERI
Sbjct:  139 HDDIAAVMGMLGHASIFGTSVQRDEGDPSHYILYLNQGGLHLPTRDYYLLEDERFVEYRAAYRAYIADVFGFLGLDDGEARADRIIALETAMANVHWTPAESRDRVATYNPTSLAELRELAPGFDWDAFFETADYADQENFIVSQTSAITGLAAVFADTPVETWRDYLTFAYVNSNTNLLSEEIYNRSFDFWGRTMSGAQEPRPRDRRAIQFVNGNLGQAIGQIYVEQYFPPEHKEQMDELVDYLRRALEERI 391          
BLAST of mRNA_Ecto-sp13_S_contig65171.17321.1 vs. uniprot
Match: A0A2D7Y4N6_9PROT (Peptidase n=3 Tax=Maricaulis TaxID=74317 RepID=A0A2D7Y4N6_9PROT)

HSP 1 Score: 308 bits (788), Expect = 3.830e-97
Identity = 149/253 (58.89%), Postives = 186/253 (73.52%), Query Frame = 1
Query:    1 HEDIAAVMGQLGYASIFGTSVQRNEGDPSHYILYLNQGGLHLPTRDYYLLEDDRFVEYREAYRAYIADVFGFLGLADGEARADRIIALETAMAETHWTPAQTRDRVATYNPASLEEVRALGAGFDWDAFFETADYADQENFIVSQTSAIEGLAAVFAETPVETWRDYLTFSYVNSNTNLLSEEIYNRSFDFWGRTLGGAQEPRPRDRRAIQFVNGNLGQAIGQIYVDQYFPPDHKAQMEELVDYLRRALTERI 759
            H+DIA +MG    +S+FG  V R+ G+P  YI+ L+QGGL LP R+YYL + +RF  YR AY  YIADVF  +G+  G  +A  I+ LETA+AE HWT A++RDRVATYN  + + +    AGF WD F  + DYADQ+ F+V Q +AI+ LA +FAE PVETWRDYL+F ++ S+ N L+ E Y RSFDF+GRTL G   PRPRDRRAIQFVNGN+GQAIGQIYV+ YFPP++K QMEELV YLR AL ERI
Sbjct:  166 HDDIANLMGAPATSSLFGAYVGRDPGNPQRYIVSLSQGGLGLPDRNYYLDDSERFEAYRTAYLDYIADVFDMIGVEGGAEKAQAILDLETAIAEIHWTRAESRDRVATYNLMTTDALSGYAAGFPWDTFLASLDYADQDEFVVRQNTAIQSLAQLFAEIPVETWRDYLSFHWMESHRNELTPEFYERSFDFYGRTLNGTDTPRPRDRRAIQFVNGNMGQAIGQIYVEHYFPPEYKEQMEELVGYLRAALRERI 418          
BLAST of mRNA_Ecto-sp13_S_contig65171.17321.1 vs. uniprot
Match: A0A1G9WWR7_9PROT (Endothelin-converting enzyme Metallo peptidase. MEROPS family M13 n=1 Tax=Maricaulis salignorans TaxID=144026 RepID=A0A1G9WWR7_9PROT)

HSP 1 Score: 306 bits (785), Expect = 8.080e-97
Identity = 140/253 (55.34%), Postives = 190/253 (75.10%), Query Frame = 1
Query:    1 HEDIAAVMGQLGYASIFGTSVQRNEGDPSHYILYLNQGGLHLPTRDYYLLEDDRFVEYREAYRAYIADVFGFLGLADGEARADRIIALETAMAETHWTPAQTRDRVATYNPASLEEVRALGAGFDWDAFFETADYADQENFIVSQTSAIEGLAAVFAETPVETWRDYLTFSYVNSNTNLLSEEIYNRSFDFWGRTLGGAQEPRPRDRRAIQFVNGNLGQAIGQIYVDQYFPPDHKAQMEELVDYLRRALTERI 759
            ++D+  + G  G+AS+FG  V R+ G+P  YI+Y+ Q GL +P RDYYL +D+RF  YR AY  Y++DVFG LG  +G  RA  ++ +ETA+A+ HWT A++RDRVA+YNP ++EE++A   GFDW  F    D+ DQ+N +VSQ +A++ LA+ F E P+ETW+DYLT  Y++SN N L E  Y+RSFDFW RTL G +EPR RDRRAIQ+VNG LGQAIG+IYV+++FP + KA+ME+LVDYLRRAL +RI
Sbjct:  153 YDDVIDLFGASGFASLFGAGVGRDAGNPDTYIVYIRQSGLGMPDRDYYLRDDERFDAYRAAYVEYMSDVFGMLGEDNGTERAQAVLDMETAIAQMHWTRAESRDRVASYNPMTIEELQAYAPGFDWARFMTALDFGDQDNVVVSQNTAVQSLASFFREIPLETWKDYLTLHYMDSNRNELDEAFYDRSFDFWSRTLSGTEEPRARDRRAIQYVNGPLGQAIGRIYVERHFPAESKAEMEDLVDYLRRALGDRI 405          
BLAST of mRNA_Ecto-sp13_S_contig65171.17321.1 vs. uniprot
Match: Q0ASH1_MARMM (Endothelin-converting enzyme, Metallo peptidase, MEROPS family M13 n=3 Tax=Maricaulis TaxID=74317 RepID=Q0ASH1_MARMM)

HSP 1 Score: 298 bits (763), Expect = 1.650e-93
Identity = 142/253 (56.13%), Postives = 184/253 (72.73%), Query Frame = 1
Query:    1 HEDIAAVMGQLGYASIFGTSVQRNEGDPSHYILYLNQGGLHLPTRDYYLLEDDRFVEYREAYRAYIADVFGFLGLADGEARADRIIALETAMAETHWTPAQTRDRVATYNPASLEEVRALGAGFDWDAFFETADYADQENFIVSQTSAIEGLAAVFAETPVETWRDYLTFSYVNSNTNLLSEEIYNRSFDFWGRTLGGAQEPRPRDRRAIQFVNGNLGQAIGQIYVDQYFPPDHKAQMEELVDYLRRALTERI 759
            H+DIA +MG  G ASIFG  V R+ G+P  YI+ ++Q GL LP + YY  +D+ FV YR+AY AY+ DVF  +G+ +   RA  ++ LET +A+ HWT A++RDRV TYN  S +++ A   GF W AF    +Y ++   +V Q +AI+ LA +F E PVE W+DYL+F Y++SN NLL+ E Y RSFDF+ RTL G +EPR RDRR IQ+VNGNLGQAIGQIYV+QYFPP+HKAQMEELV+YLRRAL ERI
Sbjct:  157 HDDIATLMGSPGTASIFGAGVGRDPGNPQRYIVSVSQSGLGLPDKSYYERDDETFVGYRDAYVAYMTDVFEMIGMDNAAERAQGVLDLETRIAQIHWTRAESRDRVRTYNLMSTDDLVASAPGFPWGAFMTALEYENETEVVVRQDTAIQSLATLFTEIPVEAWQDYLSFRYMSSNQNLLTPEFYERSFDFYSRTLRGTEEPRARDRRGIQYVNGNLGQAIGQIYVEQYFPPEHKAQMEELVEYLRRALRERI 409          
BLAST of mRNA_Ecto-sp13_S_contig65171.17321.1 vs. uniprot
Match: UPI001F44B06D (M13 family metallopeptidase n=1 Tax=Hyphobacterium indicum TaxID=2162714 RepID=UPI001F44B06D)

HSP 1 Score: 267 bits (682), Expect = 2.030e-81
Identity = 128/253 (50.59%), Postives = 173/253 (68.38%), Query Frame = 1
Query:    1 HEDIAAVMGQLGYASIFGTSVQRNEGDPSHYILYLNQGGLHLPTRDYYLLEDDRFVEYREAYRAYIADVFGFLGLADGEARADRIIALETAMAETHWTPAQTRDRVATYNPASLEEVRALGAGFDWDAFFETADYADQENFIVSQTSAIEGLAAVFAETPVETWRDYLTFSYVNSNTNLLSEEIYNRSFDFWGRTLGGAQEPRPRDRRAIQFVNGNLGQAIGQIYVDQYFPPDHKAQMEELVDYLRRALTERI 759
            HE+IA   G     S+F   V  + GDPS Y++   Q GL LP RDYYL +D+ F  +REAY  Y+  +F   G+ +G  RA+ I+ALETA+A+ HWT AQ RDR+A YN  +++E+     GFDW AF E  D ADQE  IV+  +A++GLA +FAETPVET R YL F +++++T +L     + SFDF+ R L G +E RPR+ RA+QFVNG LG+ IGQ+YV+QYFPPD++ QM ELV+YLRRA  +R+
Sbjct:  169 HEEIARWFGMPSQMSMFTMGVTIDPGDPSRYVISTGQAGLGLPNRDYYLRDDEPFPGHREAYVDYMTGLFERSGIENGRERAEAILALETAIADIHWTRAQARDRIANYNLMTVDELTEFAPGFDWRAFLEAEDVADQEEIIVNTDTAVQGLAQLFAETPVETLRSYLAFHFIDNHTAMLPAAFDDASFDFYARRLNGTEEQRPRELRAVQFVNGQLGELIGQVYVEQYFPPDYRDQMSELVEYLRRAFADRL 421          
BLAST of mRNA_Ecto-sp13_S_contig65171.17321.1 vs. uniprot
Match: UPI001F15E6B7 (M13 family metallopeptidase n=1 Tax=Hyphobacterium sp. SN044 TaxID=2912575 RepID=UPI001F15E6B7)

HSP 1 Score: 260 bits (665), Expect = 6.080e-79
Identity = 125/253 (49.41%), Postives = 172/253 (67.98%), Query Frame = 1
Query:    1 HEDIAAVMGQLGYASIFGTSVQRNEGDPSHYILYLNQGGLHLPTRDYYLLEDDRFVEYREAYRAYIADVFGFLGLADGEARADRIIALETAMAETHWTPAQTRDRVATYNPASLEEVRALGAGFDWDAFFETADYADQENFIVSQTSAIEGLAAVFAETPVETWRDYLTFSYVNSNTNLLSEEIYNRSFDFWGRTLGGAQEPRPRDRRAIQFVNGNLGQAIGQIYVDQYFPPDHKAQMEELVDYLRRALTERI 759
            HEDIA   G+    S+F   V  + GDP+ Y++   Q GL LP RDYYL EDD F  +REAY  Y+  +F   G+ +G  RA+ I+ALETA+AE HW  AQ RDR+A YN  +++E+     GFDW AF E  D A QE  IV+  +A++ LA +F+ETPVET R YL F +++++T +L E     SF+F+GR L G +E RPR+ RA+QFVNG LG+ IGQ+YV+++FPP+++ QM ELV+YLRRA  +R+
Sbjct:  166 HEDIARWFGRPSQMSMFSMGVTIDPGDPTRYVISTGQAGLGLPNRDYYLREDDPFPGHREAYVDYMTGLFDRAGIDNGRERAEDILALETAIAEIHWDRAQVRDRIANYNLMTVDELIEFAPGFDWRAFLEEEDVAGQEEIIVNTDTAVQALAQLFSETPVETLRSYLAFHFIDNHTAMLPEAYDTASFEFYGRRLNGTEEQRPRELRAVQFVNGQLGELIGQVYVEEHFPPEYREQMTELVEYLRRAFADRL 418          
BLAST of mRNA_Ecto-sp13_S_contig65171.17321.1 vs. uniprot
Match: A0A3C2E1P6_9PROT (M13 family peptidase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A3C2E1P6_9PROT)

HSP 1 Score: 249 bits (635), Expect = 1.410e-74
Identity = 117/253 (46.25%), Postives = 168/253 (66.40%), Query Frame = 1
Query:    1 HEDIAAVMGQLGYASIFGTSVQRNEGDPSHYILYLNQGGLHLPTRDYYLLEDDRFVEYREAYRAYIADVFGFLGLADGEARADRIIALETAMAETHWTPAQTRDRVATYNPASLEEVRALGAGFDWDAFFETADYADQENFIVSQTSAIEGLAAVFAETPVETWRDYLTFSYVNSNTNLLSEEIYNRSFDFWGRTLGGAQEPRPRDRRAIQFVNGNLGQAIGQIYVDQYFPPDHKAQMEELVDYLRRALTERI 759
            H+D AA+M  L + S+FG  +  +  D + Y +++ QGGL LP RDYY+ ED+RF EYR  YR Y+A +FG  G+ +GEARAD I+ LET +A+ HW+   +RD    YNP  +E +      F+++A F++      E+++V+Q SA+EG A +FAETPV+  RDY+TF  +N+NTN L  E    SFDF+G  L G +E RPR+RR +  V G+LG+A+GQIYV+++FP   K QME+LV+ L  A  ER+
Sbjct:  159 HDDFAALMSTLDHQSMFGVGIIPDPADTTRYTVFVGQGGLGLPDRDYYINEDERFAEYRTGYRDYVAQIFGLAGIDNGEARADAILELETRIAQVHWSQEDSRDIQRIYNPMPMERLAETAPQFNFEAGFDSLGIGGVESYLVAQPSALEGSATIFAETPVDVLRDYMTFHLLNNNTNALPTEFDQASFDFFGAELNGTEEQRPRNRRGVNLVGGSLGEAVGQIYVERHFPASSKDQMEDLVENLVAAFEERL 411          
BLAST of mRNA_Ecto-sp13_S_contig65171.17321.1 vs. uniprot
Match: A0A8J6IN22_9PROT (M13 family metallopeptidase n=2 Tax=Euryhalocaulis TaxID=1712422 RepID=A0A8J6IN22_9PROT)

HSP 1 Score: 246 bits (627), Expect = 6.900e-74
Identity = 121/255 (47.45%), Postives = 165/255 (64.71%), Query Frame = 1
Query:    1 HEDIAAVMGQ--LGYASIFGTSVQRNEGDPSHYILYLNQGGLHLPTRDYYLLEDDRFVEYREAYRAYIADVFGFLGLADGEARADRIIALETAMAETHWTPAQTRDRVATYNPASLEEVRALGAGFDWDAFFETADYADQENFIVSQTSAIEGLAAVFAETPVETWRDYLTFSYVNSNTNLLSEEIYNRSFDFWGRTLGGAQEPRPRDRRAIQFVNGNLGQAIGQIYVDQYFPPDHKAQMEELVDYLRRALTERI 759
            HE+IAA MG   LG  + +   V  +      Y+ Y+ Q GL LP RDYYL +D RF + R AY  YI  VF   G+  G  +A  I+ LETAMAE  W  A+ RDR  TYN  +L+E++    GFDWDA FE A  +DQ+ F+V +  AI+ L+A FA+TPVETW+DYLTF Y++ N N L ++  + +F F+G+TL G  E R R +R +  VNG +G+A+G++YV+Q+FPP+ KAQMEELV+ LR A   R+
Sbjct:  102 HEEIAAAMGDPALGAPAPYAGYVDIDSKQTDRYVFYITQSGLGLPDRDYYLNDDQRFQDIRAAYVDYIEQVFTMAGMEGGAEKAQAILELETAMAENSWERAKRRDRSLTYNLMTLDELKDYAPGFDWDATFEAAGLSDQDEFVVRENDAIQKLSATFADTPVETWKDYLTFHYIDGNANALPKQFDDANFAFYGKTLSGQPEQRERWKRGVSVVNGTIGEAVGKVYVEQHFPPEAKAQMEELVENLRIAFERRL 356          
BLAST of mRNA_Ecto-sp13_S_contig65171.17321.1 vs. uniprot
Match: A0A7G8ZNJ9_9PROT (M13 family metallopeptidase n=2 Tax=Hyphobacterium sp. CCMP332 TaxID=2749086 RepID=A0A7G8ZNJ9_9PROT)

HSP 1 Score: 244 bits (623), Expect = 9.690e-73
Identity = 115/253 (45.45%), Postives = 168/253 (66.40%), Query Frame = 1
Query:    1 HEDIAAVMGQLGYASIFGTSVQRNEGDPSHYILYLNQGGLHLPTRDYYLLEDDRFVEYREAYRAYIADVFGFLGLADGEARADRIIALETAMAETHWTPAQTRDRVATYNPASLEEVRALGAGFDWDAFFETADYADQENFIVSQTSAIEGLAAVFAETPVETWRDYLTFSYVNSNTNLLSEEIYNRSFDFWGRTLGGAQEPRPRDRRAIQFVNGNLGQAIGQIYVDQYFPPDHKAQMEELVDYLRRALTERI 759
            HEDIA +MG L Y SI    V  + GDP+ Y++   Q GL LP RDYYL +++ F E+R AY  Y+A +F   G+ +G  RA+ I+A ETA+A+ HW   Q RDR+A Y+  +++ + +   GF W+ F E    A Q   IV Q +A++ L+ +FAETPVET + YLTF Y++++T +L +     S++F+ R L G +E RPR  RA+Q VNG+ G+A+GQ+YV++YFP D++ QM ELV+YLRRA  +R+
Sbjct:  169 HEDIARLMGALNYPSIMSFGVTIDPGDPTRYVISTGQAGLGLPNRDYYLRDEEPFPEHRAAYVDYMAGLFDRAGIENGRERAEAILAFETAIADIHWPLDQVRDRIANYDLQTVDALMSYAPGFPWETFIEAGGGAGQAEIIVGQNTAVQSLSQLFAETPVETLQSYLTFHYIDNHTAMLPQAYDQASWEFYSRQLNGTEEQRPRALRAVQMVNGSFGEALGQVYVERYFPADYRDQMTELVEYLRRAFADRL 421          
BLAST of mRNA_Ecto-sp13_S_contig65171.17321.1 vs. uniprot
Match: A0A2D8BUU6_9PROT (Peptidase n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2D8BUU6_9PROT)

HSP 1 Score: 243 bits (620), Expect = 1.500e-72
Identity = 119/251 (47.41%), Postives = 159/251 (63.35%), Query Frame = 1
Query:    7 DIAAVMGQLGYASIFGTSVQRNEGDPSHYILYLNQGGLHLPTRDYYLLEDDRFVEYREAYRAYIADVFGFLGLADGEARADRIIALETAMAETHWTPAQTRDRVATYNPASLEEVRALGAGFDWDAFFETADYADQENFIVSQTSAIEGLAAVFAETPVETWRDYLTFSYVNSNTNLLSEEIYNRSFDFWGRTLGGAQEPRPRDRRAIQFVNGNLGQAIGQIYVDQYFPPDHKAQMEELVDYLRRALTERI 759
            DIAA        S     V  N  DP HYIL L Q GL LP RDYYL +DD FV Y++AYR ++A+VF   G+ +G  RA+RI ALE A+AE HWTP    D +  +N  + EE+ A    FDWD + +     D EN  + +  A+  +A V A+TP+ET RDYL   +++++ +LL    Y  SFDF+ RTL G ++PR R  RA+Q VNGNLG+ +G+IYV+++FP ++K QMEELV YLRR L ERI
Sbjct:  141 DIAAAFATPNAPSFVTEYVGVNSDDPDHYILSLTQSGLGLPGRDYYLRDDDDFVGYQQAYRDHLANVFALAGIDNGAERAERIYALEAALAEIHWTPEDATDSLLIHNRMTREELLAYAPAFDWDTYLDARGLGDLENLNLDENVALRDMAEVIADTPIETLRDYLVVHFIDNHASLLPNAFYEESFDFYSRTLSGIEQPRERHLRAVQLVNGNLGEPVGRIYVERHFPAEYKEQMEELVAYLRRGLRERI 391          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig65171.17321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Q8G1D9_9PROT3.150e-16089.33Peptidase n=2 Tax=Maricaulis TaxID=74317 RepID=A0A... [more]
A0A2D7Y4N6_9PROT3.830e-9758.89Peptidase n=3 Tax=Maricaulis TaxID=74317 RepID=A0A... [more]
A0A1G9WWR7_9PROT8.080e-9755.34Endothelin-converting enzyme Metallo peptidase. ME... [more]
Q0ASH1_MARMM1.650e-9356.13Endothelin-converting enzyme, Metallo peptidase, M... [more]
UPI001F44B06D2.030e-8150.59M13 family metallopeptidase n=1 Tax=Hyphobacterium... [more]
UPI001F15E6B76.080e-7949.41M13 family metallopeptidase n=1 Tax=Hyphobacterium... [more]
A0A3C2E1P6_9PROT1.410e-7446.25M13 family peptidase n=2 Tax=Alphaproteobacteria T... [more]
A0A8J6IN22_9PROT6.900e-7447.45M13 family metallopeptidase n=2 Tax=Euryhalocaulis... [more]
A0A7G8ZNJ9_9PROT9.690e-7345.45M13 family metallopeptidase n=2 Tax=Hyphobacterium... [more]
A0A2D8BUU6_9PROT1.500e-7247.41Peptidase n=3 Tax=Alphaproteobacteria TaxID=28211 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig65171contigEcto-sp13_S_contig65171:1..759 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size759
Hectar predicted targeting categoryother localisation
Exons1
Cds size468
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463898.8862097-UTR-Ecto-sp13_S_contig65171:0..2541681463898.8862097-UTR-Ecto-sp13_S_contig65171:0..254Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig65171 1..254 -
1681463898.9154577-UTR-Ecto-sp13_S_contig65171:722..7591681463898.9154577-UTR-Ecto-sp13_S_contig65171:722..759Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig65171 723..759 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463898.9032474-CDS-Ecto-sp13_S_contig65171:254..7221681463898.9032474-CDS-Ecto-sp13_S_contig65171:254..722Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig65171 255..722 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig65171.17321.1prot_Ecto-sp13_S_contig65171.17321.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig65171 255..722 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig65171.17321.1

>prot_Ecto-sp13_S_contig65171.17321.1 ID=prot_Ecto-sp13_S_contig65171.17321.1|Name=mRNA_Ecto-sp13_S_contig65171.17321.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=156bp
MPPSSAPRSSAMKAIPATTSFTSTRAGCTCPRGTTTCSKMIASWSIARPI
APISPMCSASSGSRMAKRAPTASSRSRRPWRRPTGHRPRRATASPPIIRQ
ASRRSAHSAPALTGMPSSRPLIMLTRRISSSPRPRPSRASRPSLPRRRSR
PGATI*
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mRNA from alignment at Ecto-sp13_S_contig65171:1..759-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig65171.17321.1 ID=mRNA_Ecto-sp13_S_contig65171.17321.1|Name=mRNA_Ecto-sp13_S_contig65171.17321.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=759bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65171:1..759- (Ectocarpus species13 EcNAP12_S_4_19m)
CATGAGGATATCGCCGCGGTGATGGGCCAGCTGGGCTATGCCTCCATCTT CGGCACCTCGGTCCAGCGCAATGAAGGCGATCCCAGCCACTACATCCTTT ACCTCAACCAGGGCGGGCTGCACCTGCCCACGCGGGACTACTACCTGCTC GAAGATGATCGCTTCGTGGAGTATCGCGAGGCCTATCGCGCCTATATCGC CGATGTGTTCGGCTTCCTCGGGCTCGCGGATGGCGAAGCGCGCGCCGACC GCATCATCGCGCTCGAGACGGCCATGGCGGAGACCCACTGGACACCGGCC CAGACGCGCGACCGCGTCGCCACCTATAATCCGGCAAGCCTCGAGGAGGT CCGCGCACTCGGCGCCGGCTTTGACTGGGATGCCTTCTTCGAGACCGCTG ATTATGCTGACCAGGAGAATTTCATCGTCTCCCAGACCTCGGCCATCGAG GGCCTCGCGGCCGTCTTTGCCGAGACGCCGGTCGAGACCTGGCGCGACTA TCTGACCTTCAGCTATGTCAATTCGAACACCAATCTTCTGTCGGAAGAGA TCTATAATCGCTCCTTCGACTTCTGGGGCCGGACCCTGGGCGGGGCGCAG GAACCGCGTCCCCGCGATCGCCGCGCCATCCAGTTCGTCAATGGCAATCT GGGCCAGGCCATCGGCCAGATCTATGTCGATCAATACTTCCCGCCAGACC ACAAGGCCCAGATGGAAGAGCTGGTCGACTATCTGCGCCGCGCCCTCACC GAGCGTATC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig65171:1..759-

>mRNA_Ecto-sp13_S_contig65171.17321.1 ID=mRNA_Ecto-sp13_S_contig65171.17321.1|Name=mRNA_Ecto-sp13_S_contig65171.17321.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=468bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65171:1..759- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTCCATCTTCGGCACCTCGGTCCAGCGCAATGAAGGCGATCCCAGC
CACTACATCCTTTACCTCAACCAGGGCGGGCTGCACCTGCCCACGCGGGA
CTACTACCTGCTCGAAGATGATCGCTTCGTGGAGTATCGCGAGGCCTATC
GCGCCTATATCGCCGATGTGTTCGGCTTCCTCGGGCTCGCGGATGGCGAA
GCGCGCGCCGACCGCATCATCGCGCTCGAGACGGCCATGGCGGAGACCCA
CTGGACACCGGCCCAGACGCGCGACCGCGTCGCCACCTATAATCCGGCAA
GCCTCGAGGAGGTCCGCGCACTCGGCGCCGGCTTTGACTGGGATGCCTTC
TTCGAGACCGCTGATTATGCTGACCAGGAGAATTTCATCGTCTCCCAGAC
CTCGGCCATCGAGGGCCTCGCGGCCGTCTTTGCCGAGACGCCGGTCGAGA
CCTGGCGCGACTATCTGA
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