mRNA_Ecto-sp13_S_contig6512.17312.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6512.17312.1
Unique NamemRNA_Ecto-sp13_S_contig6512.17312.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6512.17312.1 vs. uniprot
Match: A0A6H5L814_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L814_9PHAE)

HSP 1 Score: 362 bits (930), Expect = 4.550e-124
Identity = 182/217 (83.87%), Postives = 186/217 (85.71%), Query Frame = 3
Query:    3 HVRMGDRRELEGVTPEYFSLLEGFMATVTQAVVKREQAAPMFHVYSEALYPCPSTENATFTEFPFWPVERDQV-----------------SVCLRNTTEEDVLGSRTGTFRVEGRPILLHLGRNAAEALSCMVHADGLLMGCSTFGQLAGVLNGDGISFFSTECGGHGAPLQSKMIPPLAVAERGRTWVPIAGSWRDPVLRGKHIFSAALDELLKRK 602
            HVRMGDRRELEGVTPEYFSLLE FMATVTQAVV+REQAAPMFHV+SEALYPCPS ENATFTEFP WPVERDQV                 SVCLRN  E+    SR GTFRVEGRP+LLHLGRNAAEALSCMVHADGLLMGCSTFGQLAGVLNGD ISFFSTECGGHGAPLQSKMIPPLAVAERGR WVPIAGSWRDPVLR KHIFSAALD LLKRK
Sbjct:   32 HVRMGDRRELEGVTPEYFSLLEDFMATVTQAVVEREQAAPMFHVFSEALYPCPSPENATFTEFPLWPVERDQVDLNVSLHRLFSLSNEKVSVCLRNAAEQGAPASRKGTFRVEGRPVLLHLGRNAAEALSCMVHADGLLMGCSTFGQLAGVLNGDRISFFSTECGGHGAPLQSKMIPPLAVAERGRMWVPIAGSWRDPVLRAKHIFSAALDALLKRK 248          
BLAST of mRNA_Ecto-sp13_S_contig6512.17312.1 vs. uniprot
Match: D7FRT1_ECTSI (Long-chain acyl-CoA synthetase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRT1_ECTSI)

HSP 1 Score: 382 bits (980), Expect = 6.230e-118
Identity = 186/205 (90.73%), Postives = 191/205 (93.17%), Query Frame = 3
Query:    3 HVRMGDRRELEGVTPEYFSLLEGFMATVTQAVVKREQAAPMFHVYSEALYPCPSTENATFTEFPFWPVERDQVSVCLRNTTEEDVLGSRTGTFRVEGRPILLHLGRNAAEALSCMVHADGLLMGCSTFGQLAGVLNGDGISFFSTECGGHGAPLQSKMIPPLAVAERGRTWVPIAGSWRDPVLRGKHIFSAALDELLKRKQRSTR 617
            HVRMGDRRELEGVTPEYFSLLEGFMATVTQAVV+REQAAPMFHV+SEALYPCP  ENATFTEFPFWPVERDQVSVC RN  E+D   SR  TFRVEGRP+LLHLGRNAAEALSCMVHADGLLMGCSTFGQLAGVLNGDGISFFSTECGGHGAPLQSKMIPPLAVAERGR WVPIAGSWRDPVLR KH+FSA LDELLKRKQ STR
Sbjct:  190 HVRMGDRRELEGVTPEYFSLLEGFMATVTQAVVEREQAAPMFHVFSEALYPCPFPENATFTEFPFWPVERDQVSVCPRNAAEQDGPASRPDTFRVEGRPVLLHLGRNAAEALSCMVHADGLLMGCSTFGQLAGVLNGDGISFFSTECGGHGAPLQSKMIPPLAVAERGRMWVPIAGSWRDPVLRAKHVFSAVLDELLKRKQGSTR 394          
BLAST of mRNA_Ecto-sp13_S_contig6512.17312.1 vs. uniprot
Match: A0A6H5JW68_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW68_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 6.220e-61
Identity = 104/207 (50.24%), Postives = 133/207 (64.25%), Query Frame = 3
Query:    3 HVRMGDRRELEGVTPEYFSLLEGFMATVTQAVVKREQAAPMFHVYSEALYPCPSTENATFTEFPFWPVERDQVSVCLRNTTEEDVLG----------SRTGTFRVEGRPILLHLGRNAAEALSCMVHADGLLMGCSTFGQLAGVLNGDGISFFSTECGGHGAPLQSKMIPPLAVAERGRTWVPIAGSWRDPVLRGKHIFSAALDELL 593
            HVR+GDR++       YF  LE FM TV  A + R Q  P+FH++SE    CPS EN  F EFP WPVE DQVS C+  TT E+             +R+G F V+GR + LH+G +    LSCM +A+G+LMGCSTFGQ+AGVL+  GI FFSTEC G    +Q K+IPP+A+A RG  WVP++GSW DPV+  + I  A+LD LL
Sbjct:   82 HVRLGDRKDSLN-DDSYFDYLEDFMETVASAAIARGQDHPVFHIFSETHSRCPSAENGAFEEFPKWPVEMDQVSTCMEATTPEECPEKDAGAPSCNPTRSGIFAVDGREMNLHVGLDVQNDLSCMANANGVLMGCSTFGQVAGVLS-KGIRFFSTECAGWRTTIQYKLIPPMAIAGRGHMWVPVSGSWHDPVIASESILGASLDLLL 286          
BLAST of mRNA_Ecto-sp13_S_contig6512.17312.1 vs. uniprot
Match: D7G5J8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5J8_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 4.720e-60
Identity = 103/208 (49.52%), Postives = 126/208 (60.58%), Query Frame = 3
Query:   12 MGDRRELEGVTPEYFSLLEGFMATVTQAVVKREQAAPMFHVYSEALYPCPSTENATFTEFPFWPVERDQVSVCLRNTTEEDVLGSRTGTF---------RVEGRPILLHLGRNAAEALSCMVHADGLLMGCSTFGQLAGVLNGDGISFFSTECGGHGAPLQSKMIPPLAVAERGRTWVPIAGSWRDPVLRGKHIFSAALDELLKRKQR 608
            MGDRR     + +YF  +E  M TV     +R    P+FHV+SE L PCPST    F EFP WPVE D++  CL   T  D    + GTF         R+  + I+LH+G +    +SCM+ ADG+LMGCSTFGQ+AG+L   GIS FST C G   P Q + IPPLA+AE+G  WVPI GSW DPVL  + IFSAALD LL  K R
Sbjct:    1 MGDRRAFYDGSLQYFHNVELIMETVADEFRERGLPEPLFHVFSETLSPCPSTVTGLFDEFPIWPVELDKIEECLAAATPIDCPEKQAGTFCTPKRAGIFRIRDKSIVLHVGSDVQNEMSCMIQADGVLMGCSTFGQIAGLLT-RGISLFSTRCSGEATPHQYRSIPPLAIAEKGHLWVPIEGSWHDPVLTSRSIFSAALDTLLVAKSR 207          
BLAST of mRNA_Ecto-sp13_S_contig6512.17312.1 vs. uniprot
Match: A0A6H5JXM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXM8_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 1.140e-38
Identity = 75/187 (40.11%), Postives = 104/187 (55.61%), Query Frame = 3
Query:   75 MATVTQAVVKREQAAPMFHVYSEALYPCPSTENATFTEFPFWPVERDQVSVCLRNTTEEDVLGSR----------TGTFRVEGRPILLHLGRNAAEALSCMVHADGLLMGCSTFGQLAGVLNGDGISFFSTECGGHGAPLQSKMIPPLAVAERGRTWVPIAGSWRDPVLRGKHIFSAALDELLKRKQ 605
            M  + + V    Q  P+FH++SE   PCPS E+  F EFP W V  D++  C      +D    +          TG FRV G PI+ ++G N  ++L  M+ AD ++MGCS FGQLAG+L+  GI  FST C G+    Q+KM P  A+AE G  WVP+ GSW DP L    IF  A +  ++R++
Sbjct:    1 MKVIAKEVHGLGQRTPLFHIFSETELPCPSLEDGVFPEFPEWAVAPDEIRECHSARPPDDCPEKQAGGDFCYPHHTGIFRVPGEPIIFNVGGNVVQSLMSMISADAVVMGCSAFGQLAGILS-KGIKLFSTGCEGNMTWEQNKMAPLFAIAELGELWVPLEGSWADPTLTNVGIFRKAFELYVEREE 186          
BLAST of mRNA_Ecto-sp13_S_contig6512.17312.1 vs. uniprot
Match: A0A6H5JJ94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ94_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 8.420e-18
Identity = 50/141 (35.46%), Postives = 66/141 (46.81%), Query Frame = 3
Query:  213 DQVSVCLRNTTEEDVLGSRTGTF---------RVEGRPILLHLGRNAAEALSCMVHADGLLMGCSTFGQLAGVLNGDGISFFSTECGGHGAPLQSKMIPPLAVAERGRTWVPIAGSWRDPVLRGKHIFSAALDELLKRKQR 608
            DQ+  CL  TT +D    + GTF         R+  + I+LH+G +    +SC++ ADG+LM                                 + IPPL +AE+G  WVPI GSW DPV   + IFSAALD LL  K R
Sbjct:   20 DQIEECLAATTPQDCPEKQAGTFCTPKRAGIFRIRYKSIVLHMGSDVQNEMSCIIEADGVLM---------------------------------RSIPPLTIAEKGHLWVPIEGSWHDPVWSSRSIFSAALDTLLVAKSR 127          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6512.17312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L814_9PHAE4.550e-12483.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRT1_ECTSI6.230e-11890.73Long-chain acyl-CoA synthetase n=1 Tax=Ectocarpus ... [more]
A0A6H5JW68_9PHAE6.220e-6150.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5J8_ECTSI4.720e-6049.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXM8_9PHAE1.140e-3840.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJ94_9PHAE8.420e-1835.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6512contigEcto-sp13_S_contig6512:884..2228 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score376.3
Seed ortholog evalue9.1e-102
Seed eggNOG ortholog2880.D7FRT1
Model size833
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.fatty acid biosynthetic process
EggNOG OGsCOG0318@1,KOG3628@2759
Cds size624
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463898.224686-UTR-Ecto-sp13_S_contig6512:883..9241681463898.224686-UTR-Ecto-sp13_S_contig6512:883..924Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6512 884..924 -
1681463898.2373533-UTR-Ecto-sp13_S_contig6512:940..10971681463898.2373533-UTR-Ecto-sp13_S_contig6512:940..1097Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6512 941..1097 -
1681463898.2744305-UTR-Ecto-sp13_S_contig6512:2217..22281681463898.2744305-UTR-Ecto-sp13_S_contig6512:2217..2228Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6512 2218..2228 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463898.2495117-CDS-Ecto-sp13_S_contig6512:1097..15141681463898.2495117-CDS-Ecto-sp13_S_contig6512:1097..1514Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6512 1098..1514 -
1681463898.265123-CDS-Ecto-sp13_S_contig6512:2010..22171681463898.265123-CDS-Ecto-sp13_S_contig6512:2010..2217Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6512 2011..2217 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6512.17312.1prot_Ecto-sp13_S_contig6512.17312.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6512 1098..2217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6512.17312.1

>prot_Ecto-sp13_S_contig6512.17312.1 ID=prot_Ecto-sp13_S_contig6512.17312.1|Name=mRNA_Ecto-sp13_S_contig6512.17312.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=208bp
MGDRRELEGVTPEYFSLLEGFMATVTQAVVKREQAAPMFHVYSEALYPCP
STENATFTEFPFWPVERDQVSVCLRNTTEEDVLGSRTGTFRVEGRPILLH
LGRNAAEALSCMVHADGLLMGCSTFGQLAGVLNGDGISFFSTECGGHGAP
LQSKMIPPLAVAERGRTWVPIAGSWRDPVLRGKHIFSAALDELLKRKQRS
TRGESRP*
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mRNA from alignment at Ecto-sp13_S_contig6512:884..2228-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6512.17312.1 ID=mRNA_Ecto-sp13_S_contig6512.17312.1|Name=mRNA_Ecto-sp13_S_contig6512.17312.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1345bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6512:884..2228- (Ectocarpus species13 EcNAP12_S_4_19m)
TGCACGTGCGTATGGGAGATAGACGAGAGTTGGAGGGAGTGACCCCCGAG TACTTCTCCCTGCTGGAAGGCTTCATGGCGACCGTAACGCAAGCGGTCGT GAAGAGAGAACAGGCCGCACCAATGTTTCACGTCTATTCCGAGGCCCTCT ACCCGTGCCCCTCAACAGAGAATGCAACGTTCACTGAGTTCCCATTTTGG CCGGTAGAGCGCGACCAGGTGAGCATGGCAGGGCAAGGCCGGACCTTGAT ATCACAGGCGGGACGTTCCGTAGAAAACTAGTACCTGGAATACTTGTGAT CTCACGTTAAGACATTTCTGCGTAGACCTGGGCTTGTCGACTTTCTGCAT GTTCAGATTTGAGGGTAGATGCCGCTTGCTGCGTTGATCACCTGAAAACA CCCAAGCCGTCTTTCCAACGGTACCATGGCGCCAATACCAAAGCTTCCGC TATGATACACTACTGGACCCTTGATTCGGCCTTTTCTGTAACCCGGCGGA TCGGGTAATCGGGTCGATGTCAACGTCAGGCGCATGATCCGCTGTCCTAT TCACAAGAGGAAAACCATTGTTCCCGTCGACGCTTGACCCACACGTAGGC TCCCCTTCTACTACGTCATGTGAAGCTGACGTGAGCCTTGTCGACGCTCT TCTGACAGATTTGGTTGATCTCAATCTATCGCTCCACCGACTTCTCCGGG TGTCAAACGAACAGGTTTCCGTCTGCCTGCGGAACACGACCGAAGAAGAC GTCTTGGGGTCGCGAACGGGCACCTTCCGCGTGGAGGGTAGACCCATCCT CCTTCACCTCGGACGGAACGCCGCCGAGGCGCTGTCGTGCATGGTCCATG CGGACGGCTTGCTCATGGGGTGCTCGACCTTCGGCCAGCTGGCGGGGGTG CTCAACGGAGACGGGATTTCGTTCTTCTCCACCGAGTGCGGGGGGCACGG GGCCCCACTTCAATCCAAGATGATACCCCCCCTGGCCGTGGCAGAGAGGG GGCGGACGTGGGTGCCCATCGCAGGGTCGTGGCGAGATCCCGTTCTCAGG GGGAAGCACATTTTTTCAGCGGCCTTGGACGAGCTGCTCAAGCGCAAGCA GCGTAGCACGCGGGGTGAGTCTCGGCCGTAAATGTCCTTATTGCTCCGAA GTTTTACAACGGTTGGGGAACCAAGAGCCGCTAGGTTTTACTGGTGTTCA GGACCGGAAGTTTTGCGTTGTCATTGATAGCGTGGCAAGCGAAAAAAAAT ATTTATATGTATAGATGAGTTGTAAGCGTTCATGTCAGGCGAGTATCGCC TGAGGTGAATATACAAACAAACTATGGTCGTCCTTGCAGATTTAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6512:884..2228-

>mRNA_Ecto-sp13_S_contig6512.17312.1 ID=mRNA_Ecto-sp13_S_contig6512.17312.1|Name=mRNA_Ecto-sp13_S_contig6512.17312.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=624bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6512:884..2228- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAGATAGACGAGAGTTGGAGGGAGTGACCCCCGAGTACTTCTCCCT
GCTGGAAGGCTTCATGGCGACCGTAACGCAAGCGGTCGTGAAGAGAGAAC
AGGCCGCACCAATGTTTCACGTCTATTCCGAGGCCCTCTACCCGTGCCCC
TCAACAGAGAATGCAACGTTCACTGAGTTCCCATTTTGGCCGGTAGAGCG
CGACCAGGTTTCCGTCTGCCTGCGGAACACGACCGAAGAAGACGTCTTGG
GGTCGCGAACGGGCACCTTCCGCGTGGAGGGTAGACCCATCCTCCTTCAC
CTCGGACGGAACGCCGCCGAGGCGCTGTCGTGCATGGTCCATGCGGACGG
CTTGCTCATGGGGTGCTCGACCTTCGGCCAGCTGGCGGGGGTGCTCAACG
GAGACGGGATTTCGTTCTTCTCCACCGAGTGCGGGGGGCACGGGGCCCCA
CTTCAATCCAAGATGATACCCCCCCTGGCCGTGGCAGAGAGGGGGCGGAC
GTGGGTGCCCATCGCAGGGTCGTGGCGAGATCCCGTTCTCAGGGGGAAGC
ACATTTTTTCAGCGGCCTTGGACGAGCTGCTCAAGCGCAAGCAGCGTAGC
ACGCGGGGTGAGTCTCGGCCGTAA
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