mRNA_Ecto-sp13_S_contig651.17305.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig651.17305.1
Unique NamemRNA_Ecto-sp13_S_contig651.17305.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig651.17305.1 vs. uniprot
Match: D7FUB8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUB8_ECTSI)

HSP 1 Score: 416 bits (1070), Expect = 5.430e-142
Identity = 220/230 (95.65%), Postives = 223/230 (96.96%), Query Frame = 2
Query:   77 MARSAAYILAATAIASSTTAFVPMGGARLSSAPQATAERISGTCRRGRQHAAAAAVTSLSMAIRAVESYNADFELEEKTAATLDGYLRHKDMIAEVCKQFDCESAEYVGEIFQPVPYSQATPQGMPKDIEEKYFLNEQYGIANIPPVVMFNAKIFKPSRLCAVYKVDGLSEDAKAVLNERILRLRENEKRKKEEAELETPWDDIGSAFTEVHNMPVGSDDDDVDLDSMVV 766
            MARSAAY+LAATAI SSTTAFVPMGGARLSSAPQATAER S TCRRGRQ  AAAAV  LSMAIRAVES+NADFELEEKTAATLDGYLRHKDMIAEVCKQFDCESAEYVGEIFQPVPYSQATPQGMPKDIEEK+FLNEQYGIANIPPVVMFNAKIFKPSRLCAVYKVDGLSEDAKAVLNERILRLRENEKRKKEEAELETPWDDIGSAFTEVHNMPVGSDDDDVDLDSMVV
Sbjct:    1 MARSAAYVLAATAIVSSTTAFVPMGGARLSSAPQATAERRSATCRRGRQTDAAAAVAPLSMAIRAVESFNADFELEEKTAATLDGYLRHKDMIAEVCKQFDCESAEYVGEIFQPVPYSQATPQGMPKDIEEKFFLNEQYGIANIPPVVMFNAKIFKPSRLCAVYKVDGLSEDAKAVLNERILRLRENEKRKKEEAELETPWDDIGSAFTEVHNMPVGSDDDDVDLDSMVV 230          
BLAST of mRNA_Ecto-sp13_S_contig651.17305.1 vs. uniprot
Match: A0A836CAF1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAF1_9STRA)

HSP 1 Score: 142 bits (358), Expect = 1.070e-35
Identity = 88/189 (46.56%), Postives = 109/189 (57.67%), Query Frame = 2
Query:  236 AAVTSLSMAIRAVESYNADFELEEKTAATLDGYLRHKDMIAEVCKQFDCESAEYV-GEIFQPVPYSQATPQGMPKDIEEKYFLNEQYGIANIPPVVMFNAKIFKPSRLCAVYKVDGLSEDAKAVLNERILRLRENEKRKKEEAELETP-----------WDDIGSAFTEVHNMPVGSDDDDVDLDSMVV 766
            A  T+LSM I+AV  Y++ F L E+  A L  YL+H DM  EVCKQFD  SAEYV GEIFQPVPYS  TP GMP   E +Y  ++ Y IAN+PPVVMF AKIFKPSRLCAV++V G S  A A L E     + N   +    + E             W+ +G           G  DDD +LD++V+
Sbjct:   43 APATALSMGIKAVRDYDSSFTLSEECTALLTAYLQHPDMAKEVCKQFDLTSAEYVDGEIFQPVPYSPNTPHGMPLAFE-RYLNHDDYVIANVPPVVMFKAKIFKPSRLCAVFRVAGRSAAAVAALREAREHAQNNAVPRGAADQSEGSAGAGQSDSGEVWEGLGDVIRASFEEGDGDYDDDDELDALVL 230          
BLAST of mRNA_Ecto-sp13_S_contig651.17305.1 vs. uniprot
Match: W7TX51_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TX51_9STRA)

HSP 1 Score: 125 bits (314), Expect = 2.120e-29
Identity = 76/199 (38.19%), Postives = 112/199 (56.28%), Query Frame = 2
Query:  236 AAVTSLSMAIRAVESYNADFELEEKTAATLDGYLRHKDMIAEVCKQFDCESAEYVGEIFQPVPYSQATPQGMPKDIEEKYFLNEQYGIANIPPVVMFNAKIFKPSRLCAVYKVDGLSEDA-KAVLNERILRL--------RENEKRKKEEAELETP------------WDDIGSAFTEVH-NMPVGSDDDDVDLDSMVV 766
            A+ ++L   +R VE+++  F L  ++   L GY+  +DM  EVCKQ  C SA + G++FQPVPYS  TP GMP++ E+ + LN  Y I N+PP VMF AKIFKP RLCAV+ ++GL  D  K +L +   R+         +  + K + +E + P            W+ +G A  EV      G ++D+  LD+MVV
Sbjct:   39 ASSSTLFGGLRGVETFDGAFTLSPESEGVLVGYMECEDMKKEVCKQAKCTSARFTGQLFQPVPYSPGTPLGMPREFED-FHLNPSYAICNVPPTVMFKAKIFKPPRLCAVFTIEGLDPDEEKKILEKARARMDLQAQAAAHQPMEEKDDGSEEKRPVTVLKGSPKEENWNGVGKALHEVALGEKAGEEEDEAALDAMVV 236          
BLAST of mRNA_Ecto-sp13_S_contig651.17305.1 vs. uniprot
Match: A0A6U4Q2X6_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4Q2X6_HEMAN)

HSP 1 Score: 124 bits (311), Expect = 5.570e-29
Identity = 79/177 (44.63%), Postives = 100/177 (56.50%), Query Frame = 2
Query:  248 SLSMAIRAVESYNADFELEEKTAATLDGYLRHKDMIAEVCKQFDCESAEYVGEIFQPVPYSQATPQGMPKDIEEKYFLNEQYGIANIPPVVMFNAKIFKPSRLCAVYKVDGLSEDAKAVLNERILRLRENEKRK---KEEAELETPWDDIGSAFTEVHNM-PVGSDDDDVDLDSMVV 766
            +L M I+AVE +   F+L ++  A L  +L    M   V KQ    +AE+ G++FQPVPYS  TP GMP D E+ YFLN  Y I N+PP +MF AK FKPSRLCAVY + G+      V  E IL  +E   R+          +PW  +G A  +   M PV   DDD DLDSMVV
Sbjct:   68 ALRMGIKAVEHFEGGFQLSDEVQAALTEHLTSDKMDLTVEKQAHAAAAEFTGKLFQPVPYSVQTPHGMPADFEQ-YFLNPDYAIINVPPQIMFEAKCFKPSRLCAVYALKGVDP----VHREAILSQKEAVSRRGVAPAPPRGGSPWAGMGGAMADASRMDPV---DDDADLDSMVV 236          
BLAST of mRNA_Ecto-sp13_S_contig651.17305.1 vs. uniprot
Match: A0A8J7F1K5_9CYAN (Uncharacterized protein n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A8J7F1K5_9CYAN)

HSP 1 Score: 111 bits (278), Expect = 6.690e-26
Identity = 53/105 (50.48%), Postives = 75/105 (71.43%), Query Frame = 2
Query:  257 MAIRAVESYNADFELEEKTAATLDGYLRHKDMIAEVCKQFDCESAEYVGEIFQPVPYSQATPQGMPKDIEEKYFLNEQYGIANIPPVVMFNAKIFKPSRLCAVYK 571
            MA++ ++S++++F LE +  ATL   L ++  + +VC+Q  CE  E+   +FQPVPYS ATP+GMP + E KY  +E+Y I N+PP  MF AKIFKPSRLCA+YK
Sbjct:    1 MALKIIQSFDSNFTLEPQAKATLFELLTNESFLKQVCQQSKCEQVEFTELLFQPVPYSSATPKGMPAEFE-KYHESEEYIILNVPPNFMFQAKIFKPSRLCAIYK 104          
BLAST of mRNA_Ecto-sp13_S_contig651.17305.1 vs. uniprot
Match: A0A7S0VGI5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VGI5_9CRYP)

HSP 1 Score: 109 bits (272), Expect = 1.160e-24
Identity = 58/126 (46.03%), Postives = 80/126 (63.49%), Query Frame = 2
Query:  242 VTSLSMAIRAVESYNADFELEEKTAATLDGYLRHKDMIAEVCKQFDCESAEYVGEIFQPVPYSQATPQGMPKDIEEKYFLNEQYGIANIPPVVMFNAKIFKPSRLCAVYKVDGLS-EDAKAVLNER 616
            +  L M I+AVE++   F+L ++    L G+L    M   V KQ     AE+ G++FQPVPYS  TP GMP D EE YFL+  Y I N+PP +MF AK FKPSRLCAV+ + G++ E  + VL+++
Sbjct:    1 LAGLRMGIKAVENFEGGFQLSDEVREALTGHLTSDKMELMVEKQAHAADAEFTGKLFQPVPYSVNTPHGMPADCEE-YFLHPDYLIINVPPQIMFEAKCFKPSRLCAVFALKGVAPEQRETVLSQK 125          
BLAST of mRNA_Ecto-sp13_S_contig651.17305.1 vs. uniprot
Match: A0A6P1AAG1_9CYAN (Uncharacterized protein n=1 Tax=Kamptonema sp. SIO1D9 TaxID=2607808 RepID=A0A6P1AAG1_9CYAN)

HSP 1 Score: 107 bits (268), Expect = 1.610e-24
Identity = 49/105 (46.67%), Postives = 73/105 (69.52%), Query Frame = 2
Query:  257 MAIRAVESYNADFELEEKTAATLDGYLRHKDMIAEVCKQFDCESAEYVGEIFQPVPYSQATPQGMPKDIEEKYFLNEQYGIANIPPVVMFNAKIFKPSRLCAVYK 571
            MA++ VE+++  F L  +T  TL  +L+++  I ++C+Q   E  E+   +FQPVPYS +TP+GMP ++E  Y+ NE Y I N+PP +MF  KIFKPSRLCA+Y+
Sbjct:    1 MALKIVENFDGSFTLPSETQETLFTFLKNEKFIQQICQQVKAEKLEFTELLFQPVPYSISTPKGMPAELES-YYNNEDYAIVNVPPNLMFQCKIFKPSRLCAIYR 104          
BLAST of mRNA_Ecto-sp13_S_contig651.17305.1 vs. uniprot
Match: UPI001CCA52C6 (hypothetical protein n=1 Tax=Kovacikia minuta TaxID=2931930 RepID=UPI001CCA52C6)

HSP 1 Score: 105 bits (262), Expect = 1.170e-23
Identity = 47/105 (44.76%), Postives = 72/105 (68.57%), Query Frame = 2
Query:  257 MAIRAVESYNADFELEEKTAATLDGYLRHKDMIAEVCKQFDCESAEYVGEIFQPVPYSQATPQGMPKDIEEKYFLNEQYGIANIPPVVMFNAKIFKPSRLCAVYK 571
            M +R ++ ++ DF L+ +  ATL   LR++  + +V +Q  C   E+  ++FQPVPYS ATP+GMP + E+ Y+ ++ + I N+PP  MF AKIFKPSRLCA+Y+
Sbjct:    1 MPLRIIDDFDGDFTLDPEAEATLFELLRNEAFLQQVAQQLQCPKVEFTEQLFQPVPYSAATPKGMPAEFEQ-YYASKDHAIINVPPNFMFKAKIFKPSRLCAIYR 104          
BLAST of mRNA_Ecto-sp13_S_contig651.17305.1 vs. uniprot
Match: A0A0S3TRB2_9CYAN (Uncharacterized protein n=10 Tax=Hapalosiphonaceae TaxID=1892263 RepID=A0A0S3TRB2_9CYAN)

HSP 1 Score: 105 bits (261), Expect = 1.660e-23
Identity = 50/111 (45.05%), Postives = 74/111 (66.67%), Query Frame = 2
Query:  257 MAIRAVESYNADFELEEKTAATLDGYLRHKDMIAEVCKQFDCESAEYVGEIFQPVPYSQATPQGMPKDIEEKYFLNEQYGIANIPPVVMFNAKIFKPSRLCAVYKVDGLSE 589
            MA++ +E++++ F LE +    L   L  +  + ++C+  +CE  E+   +FQPVPYS ATP+GMP + E KY  +E+Y I N+PP  +F AKIFKPSRLCAVYK  G+ +
Sbjct:    1 MALKIIENFDSSFTLEPQAKENLFKLLTSEAFLNQICQNLECEQVEFTELLFQPVPYSIATPKGMPAEFE-KYHESEEYVIINVPPNFIFTAKIFKPSRLCAVYKKLGIGD 110          
BLAST of mRNA_Ecto-sp13_S_contig651.17305.1 vs. uniprot
Match: A0A846H4X5_9CYAN (Uncharacterized protein n=1 Tax=Hassallia byssoidea VB512170 TaxID=1304833 RepID=A0A846H4X5_9CYAN)

HSP 1 Score: 104 bits (260), Expect = 2.210e-23
Identity = 49/108 (45.37%), Postives = 71/108 (65.74%), Query Frame = 2
Query:  257 MAIRAVESYNADFELEEKTAATLDGYLRHKDMIAEVCKQFDCESAEYVGEIFQPVPYSQATPQGMPKDIEEKYFLNEQYGIANIPPVVMFNAKIFKPSRLCAVYKVDG 580
            M  + ++++++ F LE +   +L   L  +  + +VC+Q +CE  E+   +FQPVPYS  TP+GMP + E KY  N +Y I N+PP  MFNAKIFKPSRLCA+Y+  G
Sbjct:    1 MPFKIIQNFDSSFTLEPELQKSLFSLLTSEAFLKQVCQQLNCEKVEFTELLFQPVPYSLTTPKGMPGEFE-KYHDNSEYAIINVPPNFMFNAKIFKPSRLCAIYRKIG 107          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig651.17305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUB8_ECTSI5.430e-14295.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CAF1_9STRA1.070e-3546.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TX51_9STRA2.120e-2938.19Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
A0A6U4Q2X6_HEMAN5.570e-2944.63Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A8J7F1K5_9CYAN6.690e-2650.48Uncharacterized protein n=2 Tax=Cyanobacteria TaxI... [more]
A0A7S0VGI5_9CRYP1.160e-2446.03Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A6P1AAG1_9CYAN1.610e-2446.67Uncharacterized protein n=1 Tax=Kamptonema sp. SIO... [more]
UPI001CCA52C61.170e-2344.76hypothetical protein n=1 Tax=Kovacikia minuta TaxI... [more]
A0A0S3TRB2_9CYAN1.660e-2345.05Uncharacterized protein n=10 Tax=Hapalosiphonaceae... [more]
A0A846H4X5_9CYAN2.210e-2345.37Uncharacterized protein n=1 Tax=Hassallia byssoide... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig651contigEcto-sp13_S_contig651:3312..8696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score419.1
Seed ortholog evalue1.4e-114
Seed eggNOG ortholog2880.D7FUB8
Model size1529
Hectar predicted targeting categorychloroplast
Exons6
EggNOG OGs2D7JV@1,2ST2X@2759
Cds size693
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig651.17305.1prot_Ecto-sp13_S_contig651.17305.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig651 3388..7936 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463897.749316-UTR-Ecto-sp13_S_contig651:3311..33871681463897.749316-UTR-Ecto-sp13_S_contig651:3311..3387Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig651 3312..3387 +
1681463897.824806-UTR-Ecto-sp13_S_contig651:7936..86961681463897.824806-UTR-Ecto-sp13_S_contig651:7936..8696Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig651 7937..8696 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463897.7616649-CDS-Ecto-sp13_S_contig651:3387..34631681463897.7616649-CDS-Ecto-sp13_S_contig651:3387..3463Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig651 3388..3463 +
1681463897.7727017-CDS-Ecto-sp13_S_contig651:4803..49611681463897.7727017-CDS-Ecto-sp13_S_contig651:4803..4961Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig651 4804..4961 +
1681463897.783409-CDS-Ecto-sp13_S_contig651:5708..57991681463897.783409-CDS-Ecto-sp13_S_contig651:5708..5799Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig651 5709..5799 +
1681463897.7939997-CDS-Ecto-sp13_S_contig651:6082..61711681463897.7939997-CDS-Ecto-sp13_S_contig651:6082..6171Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig651 6083..6171 +
1681463897.8039196-CDS-Ecto-sp13_S_contig651:6882..70221681463897.8039196-CDS-Ecto-sp13_S_contig651:6882..7022Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig651 6883..7022 +
1681463897.8143258-CDS-Ecto-sp13_S_contig651:7797..79361681463897.8143258-CDS-Ecto-sp13_S_contig651:7797..7936Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig651 7798..7936 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig651.17305.1

>prot_Ecto-sp13_S_contig651.17305.1 ID=prot_Ecto-sp13_S_contig651.17305.1|Name=mRNA_Ecto-sp13_S_contig651.17305.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=231bp
MARSAAYILAATAIASSTTAFVPMGGARLSSAPQATAERISGTCRRGRQH
AAAAAVTSLSMAIRAVESYNADFELEEKTAATLDGYLRHKDMIAEVCKQF
DCESAEYVGEIFQPVPYSQATPQGMPKDIEEKYFLNEQYGIANIPPVVMF
NAKIFKPSRLCAVYKVDGLSEDAKAVLNERILRLRENEKRKKEEAELETP
WDDIGSAFTEVHNMPVGSDDDDVDLDSMVV*
back to top

mRNA from alignment at Ecto-sp13_S_contig651:3312..8696+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig651.17305.1 ID=mRNA_Ecto-sp13_S_contig651.17305.1|Name=mRNA_Ecto-sp13_S_contig651.17305.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5385bp|location=Sequence derived from alignment at Ecto-sp13_S_contig651:3312..8696+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGGAGAGAAGCACAGCATCACAGCATACATACATCACGCGCACGCATCC GGCCAGCCAGAAGCGGAGCAGGAGCCATGGCGCGATCAGCAGCGTACATT CTCGCAGCCACGGCAATCGCGTCTTCCACCACAGCCTTCGTGCCAATGGG AGGTGGGTCGATTCACCCCGCCGCATCCATGACATGAAGCAGTCAAGGGG CGCGCTGTACATATCGCGTTGGTTTGTGGGGTGGTGGGGTGGGTGCTGTG CACATGTTCATGAGGGCATGATGCATGGAGTACGGAAGGTTGGCCGCTGC TACACGGTATGATGAAGGAACCGTGCTCCTCGCTTTCATGTGCCACATGA TGGAATCACCCGTGCTGAATGCCGTGTACTGCCGAAGCCGGCTGTCCGCC CATCCCTGAGGACGCGTTTCAAGTTTAGAGGCAGGCACATGTACACATAG AGACTACACATGTAGACCACGTACTGTATGGCCCTCGGCAACATGAGCCC TTAGCAACAAAGCGCTGGTAAGCTGCTCTGCGTGCTGTTCAGACCGGCCC TGTCATTTAGCTGTAGAGCCATCTACAGCAACAGAGTACAGCCGATGTTT TCTTTCCCGCATGAAGACTCTCCCCAGGTTGGAACACTCCGCCGCCGCAC CGTCTGCTGTCTTCAATTTATGAAGCATGCTACAACAGCAGTTAAACATG CTTAGTACACTCCGCGGTCACGGCGGTAGCGGCAGGGGCCGAGCACCGAT TCAGTCTTGCCCCCTCCCTATCTCCCTGGCTTCCGGTAGCCAGCCATGCA GATATTTGCGCGGCGGCCTTGAGCAGGCAGCAGCGATAGTTGAATTTCAG GGTGTTGAGGGATTCCTGACAGCAAGTGTTCGCGTATCAACCCCGCACCA GGGAGCGGCAACAGCGAGGTGCTATTATATACATACATGTGCCTGAGCAA CAGCTTGTACGCTGTCGAAAGCGAAGAGAGGCACTCGTTGCACTTATATA TCTGCCAGCTCGCTCACGCACACGCACACTCATCTGGTGTGTCAAGCTTA CAGATGTTGTGTGTCGCGGACAGATCGCTTTCTCAGCCTCCCGCGTGGTC GGCGCATTGACAGCAATGAACCCTCACCGGTACACCTGCCGTATGCATAC ATTCAGGAGAAACCCGTTGGTGTTGATTTCTACATGCATAGGGCCGTGTA GTACATGATTATATCTTCGTGTTCCACAAAATTGTGTCCTTTGGGGGGTA GTTAGCCTGTGCAAAGGAAAGGCGTCCGATCAGTTGGACTGTCATCGACA AAATGAGCCGCTCAACTGGGGCGAAGGGTATAAATGTTTGAGGGCACTGA AAAAGAGATCGGATGGTGTTGACGACAATGAATATTCTCCTGTGCCGCAC GCGCAAGCACCGCTAACACTGTTACCCGACGTTTTGGTGTGGGTCCCTCC CCGGGCTGCATGCTGTGGAACACACACACGCACACCGGCCAGGCGCGAGG TTATCTTCCGCGCCGCAAGCCACGGCAGAGCGGATATCAGGCACTTGTCG AAGGGGACGACAACACGCCGCCGCCGCCGCCGTTACCTCGCTGTCGATGG CCATTCGGGCGGTAGAGAGCTACAACGCGGACTTCGAGTTGGAGGAGAAG GTGCGTCGTTGCGGCAGCGATTGTTACTACTGTCGTTAAAAATCCCCGAC TCAATCATGAGAACAGTGGACGCTGACAGCCAAAAAACTCGAAAAGTAAC GGCGCACCAAATGCACGCCCGCCCCAGGTTGACGGACTGGCGGAATATCA AAAGACCGTCCAAGAAGCTGATGCGTATCACATCAAGCTCAATATGTGAA TATTACTGACCGCGAGTTGCTTGTACCCGAGTGGCGGGGGGGTGTTATTG GGAGAACGGATGATTCTGAAAAAACTGTGGCCGAAATCCGGCAAGAGGTC AACATGATCGCACCCCCAACCAGTAGCACTGGTAGCACTGGATGGGAGTG CGATCGCGTACAGCTCTTCTCGGTTTTCGGCCGTCGTTTCATCGGAATCG TCCGTTGCCCCAATCACACACACCCGCCACCCGGGTACAAGCAACTCGCG GTCAGGAACAGCCACAAATTGAGCTTGATATGATATGCATCAGCTTCTTG GACGGCCTATTGATATTTCGCCAGTCCGTCATAACCTGGGGAGGGCGTGC ATCCATCTGTGTTTTGGTGCGCCTTTACTTCGTGGCGGTGGTTGTTGCTT TTATTGTGAACGCTGCCGAACACTTACTCTACGACCTCATTGTTCGTGTT GGAAGACCCACGGATTCTCAACAGCATTTGACGAAACACGGCATTTCCCA TGTATTCTTCGTTTACGTTCTCCCGTGGCTGGCTGTGTTTCGTTCAGACG GCGGCTACCCTGGACGGGTACCTTCGGCATAAGGACATGATCGCGGAGGT GTGCAAGCAATTCGACTGCGAAAGCGCGGAATACGTCGGTGAGCCAATAT ACACGATAACGGTTTCGTCCAAGCGCTGCTTCAATCGTGGCATGCATGCG TTTTGCTAAATAGTACGAGCACGGGTGCGCCACAGGGGTTGCATTTCATC ACGTAGGCGTCTGTGACCAATCATGGTGGCCGCGCAGCGTAGTACACTGC GAACTCGAACCGTTTTGCCTCGAGTAGAGCTTTTTGTGTCCTTTAACACC GTTTTTTTTATTTATTTTTCTTGTCTGACGACACGACTACCCCCCACACG TACGATGACCCTGTGAAACAGGTGAGATCTTCCAGCCGGTGCCGTACAGC CAAGCCACCCCCCAGGGAATGCCGAAAGACATCGAGGAGAAATACTTCCT GAACGAACAGGTGACAAAGCTGTTGCTGGTGTCGTTATCGTCGTCGGTGT TGCTTTCTGGCGGTCGAACCTGTGCGGGTGTGTTTTGTCCCGGCGTCACG TGTCGAAACGGTCGTGGACTTTGTGAGCTTTCCTGGTCCACGGGGCAGCT ATCTATCTATCAAGCATGTGCTCTACTCCTCGAGACTGAGAAACGCCTGA TTTTCCGGGGTCCCGCGAGAGGCATAAGTATACTTGTACCAGGAGTCCTG CCAGCGGTGCTACCGCTTTGTGCTTTCATTAGTGCTTATCTTCTCTATTT CCTGTCGGACCGCCTTCGCGAGAAATTTAGTCTGTGAGAAAGTAGAACAG GGGGTACAACAGACCCTATCCTTAACCCTAACCTATCTCTCCCGATAGCA TGCTTAACTCAAAATGTTTTTTACATTCCATTCGTCGACAAACCCTGCGA CGGCTACTGCTGTTCCTGTCGTGCGTTCTAGGCTACCATGCGGCCGCATC TCAGCGCTTTACTTTGTGTATGACGGGATTGATTGTATCGAGCAACAAGA GCCGATGCATGGTGCGATCGTGAAAACAACTGCGCTTTGCGGGGTGCGCT TTTGTACCCAAACGGCACCCAACGTGGCCGTCCAGTCTTCTCCCCTACCT TGATCCTGTTTTTACATGTTATTCACTCCCCTTGTTGGTAAAACCTGGCC TACGCACGCCTCAAAAAACAGTACGGGATCGCAAACATCCCTCCGGTGGT CATGTTCAACGCCAAAATCTTCAAGCCGTCGAGGTTGTGTGCGGTGTACA AGGTGGATGGGTTGTCCGAGGATGCGAAAGCGGTCCTCAACGAGCGGATT CTTCGGCTCAGGTGAAGGCGATCGCACACGGCTGCGGTTTTCTGGCAGTT CTCTCTCGGAACGCACCGGTTGTTCGTTCGAAGCTGGGCAGTCTGTTTTG TTTACATTGCAAGAGAGAAAGATCAATTGAATGGAGAAAAAAGGGAGTCT TCTTCGGCAGACGTCGGTTGGACGCTTTTTGTAGGTCACGTTCACAGAAA GCTGTCTTCCATGACGAAATTGAGAGACGCTGCTGGAACCTGCCGCTCTC TTGCTATGCAAGCGCAGCTGTTCCAGGCTGTCAGGGCCAACCACATATCC CTCTTGGTCAAGGGCCAAGTCTGCTTTGAACCCGATCGCTTTTTCTTGCG GCAGCAGTGCTGCAATAAAATTAGTATCAAGTCTTGTGCGTCCGTCCGTC TGTGTGGTCCCGGGCGATGTGTCAAACACAACTATTAATACATACTTAGA AGTATATTACAAGAAAGATGTAAAAATAGCTTTCTGAATATCAAGTGGGA CGAAACGCGCAGGTATCTAGTGTGTAGCCACACAATGTTTTCTGCCAACG TCAATGAATGGTGGCTTAGAATCAGGGGGGGGGAGAAAAACGTTTTACTC AAAAATGTCGGAAACAATTGCAGTGTTTCGTCGAATCGGGTGGTGGGGGT CTACACACATGACAGGCGTTTTGGTTTGCCGACGACCGCGCTGCAGCGGA ACGGTACAGTATGTAAGAAAACCGCAACGTTCACGTGACCAGCATATAGG GTAACATGTGTCATGTTGTGTCATGCGTTCTTTCAGGGAGAACGAGAAGC GCAAGAAGGAAGAGGCGGAGCTGGAGACACCCTGGGATGACATAGGGAGC GCCTTTACTGAGGTTCACAACATGCCCGTGGGATCGGACGATGATGACGT CGACCTCGACAGCATGGTCGTGTAGTGGGATGTTGACCATCATCGGATAG TCGCGTTTGGTCGAGAAGAGCATATTGTATCTTGTGGTTCGCCGTTCGCC AAGATGGTCCGGTCCTTTCGGTTTGGGGGAAACGGCGTCGTGGGAAGTTG GTAGATCGTTTTGTTCCCTGGCAATCCAAGTGTTTTGTTCGGTAAACGGC AAAAGATGAGTAGATGCCTCATTCTTCGCATCATCTTGTCGCTGGTCAGT AACCAAGAGGTGTGGTAAAATACTGGGATTTGATCGATCAATCCTGCTTC CGGGATTACCGCGCTGTGGCTGAAAGTAGTATGATTTAGCTCTTCCAGAC CGGTCTCTGGAGAGGACTTTAGTGTTCAAATGCGATTCGTCGGGAATGTG TGGTTTCCACATGTTACACCAGCGGTATCGTTCGGTCAGATGCTTCGCCT GGACGTTGGGTCCTTACGACCGTGCTTTGAAGGGGAGGGTGTAAGTTTTT GCGATTACGCCGCCGACACCTCTTGGGTGAAGCAGGCTCAAAACCTCGCC CTTCCCCGTAACACGTACGAGGTTGGTGTGAGCTGTGTTTTTCACAACGT GCGATTTCCTTGCAGTCCTTCCTGATACGGTAGCTGTCTTCGGCAAGTCA CTGAGACGAATGGTGGCTTCCGATGGGCAACGAAGACAGCAAATTTCTCA TGTGGTGAGCGTTTCTTGAACAATATCGCAACACGGATCCAACCTCCTTC GTATTCATTTTTCAACACCCTGCCCCATACAGACC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig651:3312..8696+

>mRNA_Ecto-sp13_S_contig651.17305.1 ID=mRNA_Ecto-sp13_S_contig651.17305.1|Name=mRNA_Ecto-sp13_S_contig651.17305.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=693bp|location=Sequence derived from alignment at Ecto-sp13_S_contig651:3312..8696+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCGATCAGCAGCGTACATTCTCGCAGCCACGGCAATCGCGTCTTC
CACCACAGCCTTCGTGCCAATGGGAGGCGCGAGGTTATCTTCCGCGCCGC
AAGCCACGGCAGAGCGGATATCAGGCACTTGTCGAAGGGGACGACAACAC
GCCGCCGCCGCCGCCGTTACCTCGCTGTCGATGGCCATTCGGGCGGTAGA
GAGCTACAACGCGGACTTCGAGTTGGAGGAGAAGACGGCGGCTACCCTGG
ACGGGTACCTTCGGCATAAGGACATGATCGCGGAGGTGTGCAAGCAATTC
GACTGCGAAAGCGCGGAATACGTCGGTGAGATCTTCCAGCCGGTGCCGTA
CAGCCAAGCCACCCCCCAGGGAATGCCGAAAGACATCGAGGAGAAATACT
TCCTGAACGAACAGTACGGGATCGCAAACATCCCTCCGGTGGTCATGTTC
AACGCCAAAATCTTCAAGCCGTCGAGGTTGTGTGCGGTGTACAAGGTGGA
TGGGTTGTCCGAGGATGCGAAAGCGGTCCTCAACGAGCGGATTCTTCGGC
TCAGGGAGAACGAGAAGCGCAAGAAGGAAGAGGCGGAGCTGGAGACACCC
TGGGATGACATAGGGAGCGCCTTTACTGAGGTTCACAACATGCCCGTGGG
ATCGGACGATGATGACGTCGACCTCGACAGCATGGTCGTGTAG
back to top