mRNA_Ecto-sp13_S_contig65.17290.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig65.17290.1
Unique NamemRNA_Ecto-sp13_S_contig65.17290.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig65.17290.1 vs. uniprot
Match: A0A6H5K6M3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M3_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 8.280e-63
Identity = 111/152 (73.03%), Postives = 121/152 (79.61%), Query Frame = 1 
Query:   73 HVGGHILKDKVRVLCTVCAFCGGVGCRSTIHDPPGEARPLVHSTCPSAPRSDARQEAVALNLGSVKAGSHTSPCTNMVLKCLFCSQDTYMWKYGISEHVARCHREDILVAAGTRVDRFKEASTISESEKAKVLQKFKAGRPRRRGQENEALP 528
            HVGG    +K   + TVC FCGGVGCRSTIHDPPGEARPLVHSTCPSAPRSDARQEAVALNL S +A S TSPCTNMVLKC  CSQD Y+W YG+ +HV RCH+ ++LVA GT  D+FKEA TISESEKAKVL K KAGRPRRR Q N   P
Sbjct: 1076 HVGGDP-GNKTSPVSTVCGFCGGVGCRSTIHDPPGEARPLVHSTCPSAPRSDARQEAVALNLSSARADSDTSPCTNMVLKCFLCSQDNYIWNYGMFDHVTRCHQANVLVAVGTGADKFKEACTISESEKAKVLHKVKAGRPRRRDQGNTLPP 1226
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BLAST of mRNA_Ecto-sp13_S_contig65.17290.1 vs. uniprot
Match: A0A6H5L2E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E6_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 5.040e-55
Identity = 95/129 (73.64%), Postives = 104/129 (80.62%), Query Frame = 1 
Query:   79 GGHILKDKVRVLCTVCAFCGGVGCRSTIHDPPGEARPLVHSTCPSAPRSDARQEAVALNLGSVKAGSHTSPCTNMVLKCLFCSQDTYMWKYGISEHVARCHREDILVAAGTRVDRFKEASTISESEKAK 465
            GGHILKDKV    T C FCGGVG  +TIHDPPG+ARPLVHSTCPSAPRSDARQEAVALNL S +AGS TS CTNMV KC FCSQ  Y+WKY +S+H+ RCH+ D+LVA GT  D FKE  TISESEKAK
Sbjct:  403 GGHILKDKVS---TACGFCGGVGRPTTIHDPPGKARPLVHSTCPSAPRSDARQEAVALNLSSARAGSDTSLCTNMVFKCFFCSQYNYIWKYSMSDHITRCHQADVLVAEGTGADNFKETCTISESEKAK 528
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BLAST of mRNA_Ecto-sp13_S_contig65.17290.1 vs. uniprot
Match: D7FNW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW9_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 1.060e-50
Identity = 86/96 (89.58%), Postives = 90/96 (93.75%), Query Frame = 1 
Query:  301 MVLKCLFCSQDTYMWKYGISEHVARCHREDILVAAGTRVDRFKEASTISESEKAKVLQKFKAGRPRRRGQENEALPTGALGSTEGNGNFGRKLAGT 588
            MVLKCLFCSQDTY+WKYG+SEHV RCHREDILVAAGT VDRFKEA TISESEKAKVLQKFKAGRPRRRGQ NEALPTGALGSTEGNG FGR ++GT
Sbjct:    1 MVLKCLFCSQDTYIWKYGMSEHVTRCHREDILVAAGTTVDRFKEAYTISESEKAKVLQKFKAGRPRRRGQGNEALPTGALGSTEGNGTFGRNMSGT 96
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BLAST of mRNA_Ecto-sp13_S_contig65.17290.1 vs. uniprot
Match: A0A6H5K5R3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R3_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 4.120e-37
Identity = 69/96 (71.88%), Postives = 79/96 (82.29%), Query Frame = 1 
Query:  301 MVLKCLFCSQDTYMWKYGISEHVARCHREDILVAAGTRVDRFKEASTISESEKAKVLQKFKAGRPRRRGQENEALPTGALGSTEGNGNFGRKLAGT 588
            MVLKC  CSQ+ Y+WKYG+SEHV R H+ED+ VAAGT VD+FKEA +ISESEKAK L KFKAG+PR+RGQ NE LP GALG TEGNG  GR +AGT
Sbjct:    1 MVLKCFVCSQNNYIWKYGMSEHVTRRHQEDMRVAAGTGVDKFKEAYSISESEKAKALHKFKAGKPRQRGQGNEVLPPGALGRTEGNGASGRNMAGT 96
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BLAST of mRNA_Ecto-sp13_S_contig65.17290.1 vs. uniprot
Match: A0A371DN83_9APHY (PHD domain-containing protein n=1 Tax=Polyporus brumalis TaxID=139420 RepID=A0A371DN83_9APHY)

HSP 1 Score: 56.6 bits (135), Expect = 3.230e-5
Identity = 47/173 (27.17%), Postives = 71/173 (41.04%), Query Frame = 1 
Query:   22 ICCKLCTREVQRSKMRLHVGGHILKD-KVRVLCTVCAFC------------GGVGCRSTIHDPPGEARPLVHSTCPSAPRSDARQEAVALNLGSVKAGSHTSPCTNMVLKCLFCSQDT-YMWKYGISEHVARCHREDILVAAGTRVDRFKEASTISESEKAKVLQKFKAGRPR 498
             C  L      R  +  H+G HIL D ++    T C FC             G G R       GE      S CP+            L++      +  SPCTN+ ++C  C +D   +WKY +S H+ R HR+D        V+ F     +S +E A+ ++K  + +PR
Sbjct: 1406 FCPTLLLSAANRGVLLNHIGAHILFDSRIDRSSTPCGFCLSTADTCAVYLKRGQGARR------GERLDYNKSRCPAK---------YTLSITRTSQPAARSPCTNVPMRCSLCPKDAPAVWKYNLSSHLLRAHRQD------PEVEPFASLWRLSPTEVAR-MEKLYSAKPR 1556
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig65.17290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K6M3_9PHAE8.280e-6373.03Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L2E6_9PHAE5.040e-5573.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNW9_ECTSI1.060e-5089.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5R3_9PHAE4.120e-3771.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A371DN83_9APHY3.230e-527.17PHD domain-containing protein n=1 Tax=Polyporus br... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig65contigEcto-sp13_S_contig65:43516..44708 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size905
Hectar predicted targeting categoryother localisation
Exons2
Cds size675
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463896.5996814-UTR-Ecto-sp13_S_contig65:43515..436821681463896.5996814-UTR-Ecto-sp13_S_contig65:43515..43682Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig65 43516..43682 -
1681463896.6479876-UTR-Ecto-sp13_S_contig65:44645..447081681463896.6479876-UTR-Ecto-sp13_S_contig65:44645..44708Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig65 44646..44708 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463896.6213496-CDS-Ecto-sp13_S_contig65:43682..443101681463896.6213496-CDS-Ecto-sp13_S_contig65:43682..44310Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig65 43683..44310 -
1681463896.6336935-CDS-Ecto-sp13_S_contig65:44598..446451681463896.6336935-CDS-Ecto-sp13_S_contig65:44598..44645Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig65 44599..44645 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig65.17290.1prot_Ecto-sp13_S_contig65.17290.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig65 43683..44645 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig65.17290.1

>prot_Ecto-sp13_S_contig65.17290.1 ID=prot_Ecto-sp13_S_contig65.17290.1|Name=mRNA_Ecto-sp13_S_contig65.17290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=225bp
MRLHVGGHILKDKVRVLCTVCAFCGGVGCRSTIHDPPGEARPLVHSTCPS
APRSDARQEAVALNLGSVKAGSHTSPCTNMVLKCLFCSQDTYMWKYGISE
HVARCHREDILVAAGTRVDRFKEASTISESEKAKVLQKFKAGRPRRRGQE
NEALPTGALGSTEGNGNFGRKLAGTGPWRTWARRKRRKRRKRRKRRRTRT
RNKTTTTTTTTTTTTKTMTKRRKK*
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mRNA from alignment at Ecto-sp13_S_contig65:43516..44708-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig65.17290.1 ID=mRNA_Ecto-sp13_S_contig65.17290.1|Name=mRNA_Ecto-sp13_S_contig65.17290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1193bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65:43516..44708- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGGACTGGGCTCCGAGAAGATCTGCTGCAAACTCTGCACGCGAGAAGT
TCAACGATCGAAAATGAGACTGCACGTGGGAGGTCACATTTTGAAGGACA
AGGTGCGGGTGTTCTTGATTTTTTTTGGCATGGGAATGCAAGACCTGGTG
AGATTTAACCTGCTTTGACACTGCTGTAGTGTGCAATGCTGTACGTGCGT
GGCTTCGTTATTTTTCATTAGTACCGTATAGACTTGACCTGCGTGGCCTG
CTTCACCCTGTCCCCTATGTTATTATTTCGCGAGATGTTGGGCAGCGGTG
CTTACCGGATGCGCGTGGACTTATGCCGCATATTTCAATCCGGCGTGGAA
ATGTCAGCGGCACGCTCACGATCCATCCTCTCTCCCTTTTTGTTGTAGGC
TTTGCACTGTCTGTGCCTTCTGTGGTGGGGTCGGGTGCCGCAGCACCATC
CATGATCCACCAGGTGAGGCCAGGCCCCTGGTGCACTCGACCTGTCCATC
AGCGCCTCGGAGCGACGCACGCCAGGAAGCCGTAGCTCTGAACTTGGGCA
GTGTGAAGGCGGGCTCACATACCTCACCGTGCACCAACATGGTCTTGAAG
TGCCTCTTCTGCTCCCAGGACACCTACATGTGGAAGTATGGCATATCCGA
GCACGTCGCAAGATGCCACCGGGAGGACATACTTGTGGCGGCGGGTACGA
GGGTAGATAGGTTCAAGGAAGCCTCCACTATCTCGGAGAGCGAGAAGGCC
AAGGTACTCCAAAAATTTAAAGCCGGGAGGCCTCGCCGACGTGGTCAAGA
AAACGAAGCCCTCCCCACTGGCGCACTTGGGAGCACGGAAGGGAACGGCA
ATTTTGGCCGTAAATTGGCCGGCACCGGTCCTTGGAGGACATGGGCGAGG
AGGAAGAGGAGGAAGAGGAGGAAGAGGAGGAAGAGGAGGAGGACGAGGAC
GAGGAACAAGACGACGACGACGACGACGACGACGACGACGACGACGAAGA
CGATGACGAAGAGGAGGAAGAAGTAGAAGAGGAAGAAAGGCGGGCAGGGG
GGGTGGAACGCCAAAGCAAGAAGCGACCGGCTCGCAGAAAACGTAGCGAG
ATACCGGGCGAGAACTCGGAAGTAGGGGTCCGCGTGAGTAAGCGGGGTAG
AGTGATCAAGAAAAACGTAACCCTACAAGACCAAGGCTACTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig65:43516..44708-

>mRNA_Ecto-sp13_S_contig65.17290.1 ID=mRNA_Ecto-sp13_S_contig65.17290.1|Name=mRNA_Ecto-sp13_S_contig65.17290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=675bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65:43516..44708- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGACTGCACGTGGGAGGTCACATTTTGAAGGACAAGGTGCGGGTGCT
TTGCACTGTCTGTGCCTTCTGTGGTGGGGTCGGGTGCCGCAGCACCATCC
ATGATCCACCAGGTGAGGCCAGGCCCCTGGTGCACTCGACCTGTCCATCA
GCGCCTCGGAGCGACGCACGCCAGGAAGCCGTAGCTCTGAACTTGGGCAG
TGTGAAGGCGGGCTCACATACCTCACCGTGCACCAACATGGTCTTGAAGT
GCCTCTTCTGCTCCCAGGACACCTACATGTGGAAGTATGGCATATCCGAG
CACGTCGCAAGATGCCACCGGGAGGACATACTTGTGGCGGCGGGTACGAG
GGTAGATAGGTTCAAGGAAGCCTCCACTATCTCGGAGAGCGAGAAGGCCA
AGGTACTCCAAAAATTTAAAGCCGGGAGGCCTCGCCGACGTGGTCAAGAA
AACGAAGCCCTCCCCACTGGCGCACTTGGGAGCACGGAAGGGAACGGCAA
TTTTGGCCGTAAATTGGCCGGCACCGGTCCTTGGAGGACATGGGCGAGGA
GGAAGAGGAGGAAGAGGAGGAAGAGGAGGAAGAGGAGGAGGACGAGGACG
AGGAACAAGACGACGACGACGACGACGACGACGACGACGACGACGAAGAC
GATGACGAAGAGGAGGAAGAAGTAG
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