mRNA_Ecto-sp13_S_contig64951.17282.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig64951.17282.1
Unique NamemRNA_Ecto-sp13_S_contig64951.17282.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig64951.17282.1 vs. uniprot
Match: A0A6H5JVI4_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI4_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.810e-29
Identity = 56/60 (93.33%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    1 DREALLTLYNETGGPEWTDNDGWATNSSDMNSWYGLSINETGSYVSRVSLEKNNLQGRSP 180
            DREALLTLYNETGGPEWTD DGW TNSSDMNSWYGLSINETGSYVSRVSLEKNNLQG  P
Sbjct:   29 DREALLTLYNETGGPEWTDTDGWDTNSSDMNSWYGLSINETGSYVSRVSLEKNNLQGDLP 88
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BLAST of mRNA_Ecto-sp13_S_contig64951.17282.1 vs. uniprot
Match: D8LTP7_ECTSI (Two component regulator three Y domain protein/ leucine rich repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP7_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 1.410e-27
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:    1 DREALLTLYNETGGPEWTDNDGWATNSSDMNSWYGLSINETGSYVSRVSLEKNNLQGRSP 180
            DREALLTLYN TGG EWTDNDGWATNSSDM+SWYGLSINETGSYVSRVSL KNNLQG  P
Sbjct:   28 DREALLTLYNATGGSEWTDNDGWATNSSDMSSWYGLSINETGSYVSRVSLGKNNLQGDLP 87
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BLAST of mRNA_Ecto-sp13_S_contig64951.17282.1 vs. uniprot
Match: A0A6H5K448_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K448_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 3.710e-25
Identity = 45/61 (73.77%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 DREALLTLYNETGGPEWTDNDGWATNSSDMNSWYGLSINETGSYVSRVSLEKNNLQGRSPM 183
            DREAL+ LYN TGGP+WT NDGWAT  SDM SWYGL+INET S+VS +SL KNNL+GRS M
Sbjct:   29 DREALIALYNATGGPDWTYNDGWATGDSDMASWYGLTINETTSFVSSISLTKNNLEGRSYM 89
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BLAST of mRNA_Ecto-sp13_S_contig64951.17282.1 vs. uniprot
Match: D8LTP4_ECTSI (Putative Leucine Rich Repeat Protein Kinase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP4_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 1.330e-19
Identity = 42/59 (71.19%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:   13 LLTLYNETGGPEWTDNDGWATNSSDMNSWYGLSINETGSYVSRVSLEKNNLQGRSPMPL 189
            L+TLYN TGGP W  NDGWAT+ SDM SWYGLSINET SYVS +SL +NNLQG  P  L
Sbjct:   28 LITLYNATGGPNWNYNDGWATDDSDMTSWYGLSINETRSYVSSISLIRNNLQGDLPPEL 86
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BLAST of mRNA_Ecto-sp13_S_contig64951.17282.1 vs. uniprot
Match: UPI0013564D34 (M64 family metallo-endopeptidase n=1 Tax=Millionella massiliensis TaxID=1871023 RepID=UPI0013564D34)

HSP 1 Score: 67.0 bits (162), Expect = 2.430e-11
Identity = 31/60 (51.67%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:    1 DREALLTLYNETGGPEWTDNDGWATNSSDMNSWYGLSINETGSYVSRVSLEKNNLQGRSP 180
            DREAL+ LYN TGG  WT ND W ++   +N WYG++ N T   VS +SL +NNL G  P
Sbjct:  219 DREALIALYNATGGNNWTHNDNWCSDKP-INEWYGVTTNYTTGRVSEISLPENNLSGSLP 277
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BLAST of mRNA_Ecto-sp13_S_contig64951.17282.1 vs. uniprot
Match: A0A352FEI0_9BACT (Uncharacterized protein n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A352FEI0_9BACT)

HSP 1 Score: 61.2 bits (147), Expect = 1.840e-10
Identity = 27/65 (41.54%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:    1 DREALLTLYNETGGPEWTDNDGWATNSSDMNSWYGLSINETGSYVSRVSLEKNNLQGRSPMPLVS 195
            DR+AL+ LYN TGGP WT++  W   ++ + +WYG+++  T   V++V L  NNL G  P  + S
Sbjct:   38 DRDALMALYNATGGPAWTNHTNWGGTAATVGTWYGVTV--TSGKVTKVKLTANNLTGSLPTEIGS 100
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BLAST of mRNA_Ecto-sp13_S_contig64951.17282.1 vs. uniprot
Match: UPI00058C01E9 (T9SS type A sorting domain-containing protein n=1 Tax=Psychroserpens mesophilus TaxID=325473 RepID=UPI00058C01E9)

HSP 1 Score: 63.5 bits (153), Expect = 4.060e-10
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:    1 DREALLTLYNETGGPEWTDNDGWATNSSDMNSWYGLSINETGSYVSRVSLEKNNLQGRSPMPLVS 195
            +R+AL+ LYN TGGP WT +D W +N S +N W G+ + +   ++SRV L   NL G+ P  +++
Sbjct:  439 ERQALVDLYNATGGPLWTSSDNWLSNDSPLNDWEGIRVED--GHISRVILSNRNLTGQIPNSILN 501
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BLAST of mRNA_Ecto-sp13_S_contig64951.17282.1 vs. uniprot
Match: A0A7X4IQ39_9BACT (Uncharacterized protein n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X4IQ39_9BACT)

HSP 1 Score: 63.5 bits (153), Expect = 4.070e-10
Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = 1 
Query:    1 DREALLTLYNETGGPEWTDNDGWATNSSDMNSWYGLSINETGSYVSRVSLEKNNLQGRSPMPL 189
            DR AL+ LYN TGGPEWT ND W T+   ++ WYG+ +++ G  V+ + L +N LQG  P  L
Sbjct:   75 DRNALVALYNATGGPEWTHNDNWLTDEP-LDEWYGVVVDDAGR-VTGLHLPRNGLQGELPAAL 135
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BLAST of mRNA_Ecto-sp13_S_contig64951.17282.1 vs. uniprot
Match: A0A6L7VYD3_9BACT (Fibronectin type-III domain-containing protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6L7VYD3_9BACT)

HSP 1 Score: 62.4 bits (150), Expect = 1.020e-9
Identity = 29/64 (45.31%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:    4 REALLTLYNETGGPEWTDNDGWATNSSDMNSWYGLSINETGSYVSRVSLEKNNLQGRSPMPLVS 195
            REAL+ LYN TGGP WT+N  W T+ +D+++WYG+++      V+R+ L +N+L G  P  LV+
Sbjct:  277 REALVALYNATGGPNWTNNTNWLTD-NDISTWYGVTV--FNGQVTRLVLSENSLSGNLPEELVA 337
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BLAST of mRNA_Ecto-sp13_S_contig64951.17282.1 vs. uniprot
Match: A0A6B1BPP2_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6B1BPP2_9BACT)

HSP 1 Score: 62.4 bits (150), Expect = 1.030e-9
Identity = 29/64 (45.31%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:    4 REALLTLYNETGGPEWTDNDGWATNSSDMNSWYGLSINETGSYVSRVSLEKNNLQGRSPMPLVS 195
            REAL+ LYN TGGP WT+N  W T+ +D+++WYG+++      V+R+ L +N+L G  P  LV+
Sbjct:  487 REALVALYNATGGPNWTNNTNWLTD-NDISTWYGVTV--FNGQVTRLVLSENSLSGNLPEELVA 547
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig64951.17282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JVI4_9PHAE1.810e-2993.33Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LTP7_ECTSI1.410e-2790.00Two component regulator three Y domain protein/ le... [more]
A0A6H5K448_9PHAE3.710e-2573.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTP4_ECTSI1.330e-1971.19Putative Leucine Rich Repeat Protein Kinase (Parti... [more]
UPI0013564D342.430e-1151.67M64 family metallo-endopeptidase n=1 Tax=Millionel... [more]
A0A352FEI0_9BACT1.840e-1041.54Uncharacterized protein n=1 Tax=Bacteroidales bact... [more]
UPI00058C01E94.060e-1041.54T9SS type A sorting domain-containing protein n=1 ... [more]
A0A7X4IQ39_9BACT4.070e-1047.62Uncharacterized protein n=2 Tax=Gemmatimonadetes b... [more]
A0A6L7VYD3_9BACT1.020e-945.31Fibronectin type-III domain-containing protein n=1... [more]
A0A6B1BPP2_9BACT1.030e-945.31Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig64951contigEcto-sp13_S_contig64951:438..644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score114.4
Seed ortholog evalue2.1e-23
Seed eggNOG ortholog2880.D8LTP7
Preferred nameRIPK4
Model size207
KEGG koko:K02861,ko:K08846,ko:K08847,ko:K08848,ko:K16289
KEGG Pathwayko04064,ko04210,ko04217,ko04620,ko04621,ko04622,ko04623,ko04668,ko04722,ko05131,ko05152,ko05160,ko05169,map04064,map04210,map04217,map04620,map04621,map04622,map04623,map04668,map04722,map05131,map05152,map05160,map05169
Hectar predicted targeting categoryother localisation
GOsGO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009653,GO:0009888,GO:0009889,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0044093,GO:0044424,GO:0044464,GO:0048518,GO:0048729,GO:0048856,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051252,GO:0060255,GO:0060429,GO:0065007,GO:0065009,GO:0080090,GO:1903506,GO:2000112,GO:2001141
Exons1
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-06_000720.1
EC2.7.11.1
Cds size207
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463896.0276864-CDS-Ecto-sp13_S_contig64951:437..6441681463896.0276864-CDS-Ecto-sp13_S_contig64951:437..644Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig64951 438..644 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig64951.17282.1prot_Ecto-sp13_S_contig64951.17282.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig64951 438..644 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig64951.17282.1

>prot_Ecto-sp13_S_contig64951.17282.1 ID=prot_Ecto-sp13_S_contig64951.17282.1|Name=mRNA_Ecto-sp13_S_contig64951.17282.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=69bp
DREALLTLYNETGGPEWTDNDGWATNSSDMNSWYGLSINETGSYVSRVSL
EKNNLQGRSPMPLVSDED*
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mRNA from alignment at Ecto-sp13_S_contig64951:438..644+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig64951.17282.1 ID=mRNA_Ecto-sp13_S_contig64951.17282.1|Name=mRNA_Ecto-sp13_S_contig64951.17282.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64951:438..644+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACCGCGAGGCTCTCCTCACGCTGTACAATGAGACCGGCGGACCAGAGTG
GACAGACAACGACGGTTGGGCCACGAACAGCAGTGACATGAACTCCTGGT
ACGGGCTCTCCATCAACGAGACGGGGTCGTACGTGTCGAGGGTATCCCTG
GAAAAGAACAACCTGCAAGGTAGGTCCCCTATGCCGTTGGTCTCTGACGA
AGATTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig64951:438..644+

>mRNA_Ecto-sp13_S_contig64951.17282.1 ID=mRNA_Ecto-sp13_S_contig64951.17282.1|Name=mRNA_Ecto-sp13_S_contig64951.17282.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64951:438..644+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACCGCGAGGCTCTCCTCACGCTGTACAATGAGACCGGCGGACCAGAGTG
GACAGACAACGACGGTTGGGCCACGAACAGCAGTGACATGAACTCCTGGT
ACGGGCTCTCCATCAACGAGACGGGGTCGTACGTGTCGAGGGTATCCCTG
GAAAAGAACAACCTGCAAGGTAGGTCCCCTATGCCGTTGGTCTCTGACGA
AGATTGA
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