mRNA_Ecto-sp13_S_contig6484.17269.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6484.17269.1
Unique NamemRNA_Ecto-sp13_S_contig6484.17269.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6484.17269.1 vs. uniprot
Match: D8LMF2_ECTSI (Similar to Isochorismate Synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF2_ECTSI)

HSP 1 Score: 746 bits (1926), Expect = 2.530e-242
Identity = 475/567 (83.77%), Postives = 489/567 (86.24%), Query Frame = 1
Query:   13 SSSAARLSRWACDRALASRIAALGRRPTTSSAAGVNFSERPAEEEARAFLDRWYAAPLWGDVRQRRPSAYSAMIDRRLSNLGFGLDPGHRGRDDKPRAPREMVKSDSHNGKKAISNNSSSTGLRRDSGLSNERGEGNSSXXXXXXXXXRGLSSESYDRDGKEDGEGIFLVPTGRDGGGXXXNGSMKARELARSCLALSVARQANLWPLLRQLSDKKNTDKMGGGGGAGE-NSVLPVVYVAGELDPRYGGCCGEVGGSGTSGSGGGVHCETRVGSANAANGTTPPPPFPSEQEGAVGGGGCGADLSGVVKGTSVSEVGRVAGAGTGCAALASAAVVPGARTVAQAVQEACPGLSLCKLTERRGVLVRLEALLPRSPGMGVGREHEEGRRVWGVGEVTPLPADGG----DGRTPQEVGSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSATATATRPEGSSAXXXXXXXXXRSSPTRLLPSVRCGIEMAVVHLAARAAGVSVGAAVSAASGLPCRGAVEINGLATRGEGVATGGSTEAGPRVLKVKVGGVAGPSEDAA 1698
            SSSAARLSRWACDRALASRIAALGRRPT SS AGVN  ERPAEEEARAFLDRWYAAPLWGDVR RRPSAYSAMIDRRLSNLGF  DP HRGRDDKP APRE++KSDSH GKKAI NNSS TGLRRDSGL N RGEGNSS         RGL SES DRDGK+D EGI LVPTGRDGG      S+KARELARSCLALSVARQANLWPLLRQLSDKKNTDKMGGGGGAG+ NSVLPVVYVAGELDPRYGG CG VGGSGTSG   GVH E +VGSANAANGTTPPP FP          GCGAD+SGVVKGTSV+EVGRVAGAG GCAALASAAVVPGARTVAQAV+E    LSLCKLTERRGVLVRLEALLP+SP  GVGRE EEGRRVWGVGEVTPLPADGG    DGRTP+EVG         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSATATAT PEG   XXXXXXXXXRSSP+RLLP+VRCGIEMAVVHL ARAAGVSVGAAVSAASGLPCRGAVEINGLATRGEGVATGGSTEAGPRVLKVKVGG+AGPSEDAA
Sbjct: 1903 SSSAARLSRWACDRALASRIAALGRRPTASSVAGVNVRERPAEEEARAFLDRWYAAPLWGDVRHRRPSAYSAMIDRRLSNLGF--DPSHRGRDDKPGAPREVIKSDSHGGKKAILNNSS-TGLRRDSGLGNGRGEGNSSEAGLRTCSGRGLRSESGDRDGKKDREGICLVPTGRDGGAGGSR-SLKARELARSCLALSVARQANLWPLLRQLSDKKNTDKMGGGGGAGDKNSVLPVVYVAGELDPRYGGRCGAVGGSGTSGXXXGVHGEPQVGSANAANGTTPPPSFPXXXXXXXXXXGCGADISGVVKGTSVTEVGRVAGAGAGCAALASAAVVPGARTVAQAVEE----LSLCKLTERRGVLVRLEALLPQSPETGVGREQEEGRRVWGVGEVTPLPADGGSGSGDGRTPKEVGP--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSATATATHPEGXXXXXXXXXXXXRSSPSRLLPTVRCGIEMAVVHLVARAAGVSVGAAVSAASGLPCRGAVEINGLATRGEGVATGGSTEAGPRVLKVKVGGIAGPSEDAA 2453          
BLAST of mRNA_Ecto-sp13_S_contig6484.17269.1 vs. uniprot
Match: A0A6H5JZW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZW3_9PHAE)

HSP 1 Score: 610 bits (1574), Expect = 1.040e-203
Identity = 443/733 (60.44%), Postives = 461/733 (62.89%), Query Frame = 1
Query:   25 ARLSRWACDRALASRIAALGRRPTTSSAAGVNFSER-----------------------PAEEEARAFLDRWYAAPLWGDVRQRRPSAYSAMIDRRLSNLGFGLDPGHRGRDDKPRAPREMVKSDSHNGKKAISNNSSSTGLRRDSGLSNERGEGNSSXXXXXXXXXRGLSSESYDRDGKEDGEGIFLVPTGRDGGGXXXNGSMKARELARSCLALSVARQANLWPLLRQLSDKKNTDKMGGGGGAGENSVLPVVYVAGELDPRYGGCCGEVGGSGTSGSG-GGVHCETRVGSANAANGTTPPPPFPSEQEGAVGGGGCGADLSGVVKGTSVSEVGRVAGAGTGCAALASAAVVPGARTVAQAVQEACPG------------------------------------------------------------------------------------------------LSLCKLTERRGVLVRLEALLPRSPGMGVGREHEEGRRVWGVGEVTPLPA-----------------------------------DGGDG------------------------------------------RTPQEVGSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSATATATRPEGSSAXXXXXXXXXRSSPTRLLPSVRCGIEMAVVHLAARAAGVSVGAAVSAASGLPCRGAVEINGLATRGEGVATGGST 1632
            ARLSRWACDRALASRIAALGRRP  SS AGVNFSER                       PAEEEARAFLDRWYAAPLWGDVRQRRPSAYSAMIDRRLSNLGFGLDPGHR  DDKP APREMV SDSH GKKAI NNSS TGLR+DSGL N RGEGNSS         RGLSSES DRD K+D EG+ LVPTGRD GG   NGSM ARELARSCLALSVARQANLWPLLRQLSDKKNTDKM GGGGAG+ SVLPV+YVAGELDPRYGG CG VGGS TSGS  GGVH E +VGSA+ ANGTTPPP FPSE+  A G GGCGAD+SGVV+GTSV+EVGR+AGAG GCAALASAAVVPGARTVAQAV+EACPG                                                                                                LSLCKLTERRGVLVRLEALLPRS   GVGRE EEGRRVWGVGEVTPLP                                    DG DG                                          RTP+E+G+ XXXXXXXXXXXXXXXXXXX    X   XXXXXXXXXXXX              XXXXXXXXX SS +RLLPSVRCGIEMAVVHLAARAAGVS+GAAVSAASGLPCRGAVEINGLATRGEGVATGGST
Sbjct:  225 ARLSRWACDRALASRIAALGRRPAASSVAGVNFSERYHKALPYFGLLSVCLSTLPPSSRPAEEEARAFLDRWYAAPLWGDVRQRRPSAYSAMIDRRLSNLGFGLDPGHRSHDDKPGAPREMVNSDSHGGKKAILNNSS-TGLRQDSGLRNGRGEGNSSEVRLGAGSGRGLSSESDDRDWKKDREGMCLVPTGRDVGGGGGNGSMTARELARSCLALSVARQANLWPLLRQLSDKKNTDKMRGGGGAGDTSVLPVMYVAGELDPRYGGRCGAVGGSCTSGSSSGGVHGEPQVGSAHEANGTTPPPSFPSEKGVAAGSGGCGADISGVVRGTSVNEVGRLAGAGAGCAALASAAVVPGARTVAQAVEEACPGVSVAVIAGAGHAVPTEAPAALFREVAKLSAVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTAAGVGEEERVARITRFSLEEFSIPMTSPLQLSLCKLTERRGVLVRLEALLPRS---GVGREKEEGRRVWGVGEVTPLPGFHEETLEEATANLRSVLPSLVGRSTSIELAALGATDGNDGDGESRLDAWLNAAVAAGAAAPSATADGLGPAAXXXXXXXXXXRTPKELGAXXXXXXXXXXXXXXXXXXXXVTTPXVASXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXSSSSRLLPSVRCGIEMAVVHLAARAAGVSIGAAVSAASGLPCRGAVEINGLATRGEGVATGGST 952          
BLAST of mRNA_Ecto-sp13_S_contig6484.17269.1 vs. uniprot
Match: A0A7S4R202_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4R202_9DINO)

HSP 1 Score: 79.0 bits (193), Expect = 2.200e-11
Identity = 62/136 (45.59%), Postives = 76/136 (55.88%), Query Frame = 1
Query: 1453 RLLPSVRCGIEMAVVHLAARAAGVS-VGAAVSAASGLPCRGAVEINGLATRGEGVATGGSTEAGPRVLKVKVGGVAGPSEDAARTVQLLR--ESGSPGSSRSSSISNISSTLRLDANQAWTMDEALQFSAALGDAA 1851
            RLLPSVR G EMA++HLAARAAG   +GA  + A    C   + INGL  R E +   G    GP V+KVKVG    P EDA RT +L    E    G +R          LRLDANQAW +++A++F   L D A
Sbjct: 1625 RLLPSVRAGFEMALLHLAARAAGAPHLGALAARARQASCSSGIGINGLVVREEDL---GDLSGGPMVVKVKVG--KDPVEDALRTSRLAEALEQRMGGKAR----------LRLDANQAWAVEDAVRFVGKLSDRA 1745          
BLAST of mRNA_Ecto-sp13_S_contig6484.17269.1 vs. uniprot
Match: A0A7S2PK40_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2PK40_9DINO)

HSP 1 Score: 64.7 bits (156), Expect = 3.070e-7
Identity = 55/137 (40.15%), Postives = 73/137 (53.28%), Query Frame = 1
Query: 1447 PTRLLPSVRCGIEMAVVHLAARAAGVSVGAAVSA-ASGLPCRGAVEINGLATRGEGVATGGSTEAGPRVLKVKVGGVAGPSEDAAR---TVQLLRESGSPGSSRSSSISNISSTLRLDANQAWTMDEALQFSAALGD 1845
            P  LLPSVRCG+EMAV+HL  R     + + V+A A G+ C   + IN L  R E +   G ++ G  V+KVKVG    P++D+ R      +LR    P            + LRLDANQAW +DEA +F   L D
Sbjct:  188 PEPLLPSVRCGLEMAVLHLLGRVTQTPILSGVAANARGVGCASCIGINSLIAREEELR--GPSD-GAVVVKVKVGRE--PTQDSQRINTVADILRARRGP-----------DARLRLDANQAWDIDEAAEFLKGLSD 308          
BLAST of mRNA_Ecto-sp13_S_contig6484.17269.1 vs. uniprot
Match: A0A7S3T9A4_EMIHU (Hypothetical protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3T9A4_EMIHU)

HSP 1 Score: 60.8 bits (146), Expect = 6.740e-6
Identity = 54/154 (35.06%), Postives = 71/154 (46.10%), Query Frame = 1
Query: 1456 LLPSVRCGIEMAVVHLAARAAGVSVGAAVSAASGLPCRGAVEINGLATRGEGVATGGSTEA-----------------GP---------RVLKVKVGGVAGPSEDAARTVQLLRESGSPGSSRSSSISNISSTLRLDANQAWTMDEALQFSAAL 1839
            LLPSVRC +EMA +HL A+AA  S+   V  A   P +  V INGL  RGE  +   + +A                 GP         R  KVKVGG   P+ D  R  +LL              + + + LRLDANQAW+ ++A  F  A+
Sbjct:  417 LLPSVRCALEMACLHLLAQAANTSIAQLVCCARRAPYQSHVRINGLLARGEASSLEAAADAARAAVDSARPSSRACASGPAVKHAAARMRTWKVKVGG-GDPAADGRRIGKLLL-----------GCTALGARLRLDANQAWSREQAATFCEAM 558          
BLAST of mRNA_Ecto-sp13_S_contig6484.17269.1 vs. uniprot
Match: A0A812RG24_9DINO (PHYLLO protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812RG24_9DINO)

HSP 1 Score: 60.5 bits (145), Expect = 8.950e-6
Identity = 53/136 (38.97%), Postives = 73/136 (53.68%), Query Frame = 1
Query: 1444 SPTRLLPSVRCGIEMAVVHLAARAAGVSVGAAVSAASGLPCRGAVEINGLATRGEGVATGGSTEAGPRVLKVKVGGVAGPSEDAARTVQLLRESGSPGSSRSSSISNISSTLRLDANQAWTMDEALQFSAALGDAA 1851
            SP  LLPSVR G+EMA++HL  R       AA + A GL C+  V IN L  + + + T G++     V K+KVG    P +DAART +L  +       ++         LRLDAN+AWT  +A +F  +L  AA
Sbjct:  504 SPGPLLPSVRAGLEMALLHLLRRDYPQPY-AAAALARGLCCQSEVSINSLVAQNDDLDTDGAS-----VAKLKVG--KDPKQDAARTNRLAEKLHERRGDKA--------RLRLDANRAWTTAQAAEFLNSLSPAA 623          
BLAST of mRNA_Ecto-sp13_S_contig6484.17269.1 vs. uniprot
Match: A0A7S2CEX0_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2CEX0_9DINO)

HSP 1 Score: 52.8 bits (125), Expect = 8.290e-5
Identity = 19/35 (54.29%), Postives = 27/35 (77.14%), Query Frame = 1
Query:  142 EEARAFLDRWYAAPLWGDVRQRRPSAYSAMIDRRL 246
            +E R+FL+RWY+APLW  + +RRP AY  M+ +RL
Sbjct:   50 QELRSFLERWYSAPLWARLSERRPEAYGRMLSKRL 84          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6484.17269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LMF2_ECTSI2.530e-24283.77Similar to Isochorismate Synthase n=1 Tax=Ectocarp... [more]
A0A6H5JZW3_9PHAE1.040e-20360.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4R202_9DINO2.200e-1145.59Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A7S2PK40_9DINO3.070e-740.15Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
A0A7S3T9A4_EMIHU6.740e-635.06Hypothetical protein n=3 Tax=Emiliania huxleyi Tax... [more]
A0A812RG24_9DINO8.950e-638.97PHYLLO protein n=1 Tax=Symbiodinium sp. CCMP2592 T... [more]
A0A7S2CEX0_9DINO8.290e-554.29Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6484contigEcto-sp13_S_contig6484:3869..8182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score754.2
Seed ortholog evalue4.9e-215
Seed eggNOG ortholog2880.D8LMF2
Model size1917
KEGG rclassRC00588,RC01053,RC02148,RC02186,RC02475
KEGG koko:K02552,ko:K14759
KEGG ReactionR01717,R04031,R08165,R08166
KEGG Pathwayko00130,ko01053,ko01100,ko01110,ko01130,map00130,map01053,map01100,map01110,map01130
KEGG ModuleM00116
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.anthranilate synthase activity
EggNOG OGsCOG0147@1,COG0596@1,KOG1223@2759,KOG2382@2759
Ec32 ortholog descriptionSimilar to Isochorismate Synthase
Ec32 orthologEc-05_002520.5
EC2.2.1.9,4.2.1.113,4.2.99.20,5.4.4.2
Cds size1917
COG Functional cat.EH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463895.0195959-CDS-Ecto-sp13_S_contig6484:3868..41501681463895.0195959-CDS-Ecto-sp13_S_contig6484:3868..4150Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6484 3869..4150 -
1681463895.03262-CDS-Ecto-sp13_S_contig6484:5138..55661681463895.03262-CDS-Ecto-sp13_S_contig6484:5138..5566Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6484 5139..5566 -
1681463895.0438516-CDS-Ecto-sp13_S_contig6484:6053..61981681463895.0438516-CDS-Ecto-sp13_S_contig6484:6053..6198Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6484 6054..6198 -
1681463895.059002-CDS-Ecto-sp13_S_contig6484:6450..73811681463895.059002-CDS-Ecto-sp13_S_contig6484:6450..7381Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6484 6451..7381 -
1681463895.0756934-CDS-Ecto-sp13_S_contig6484:8051..81821681463895.0756934-CDS-Ecto-sp13_S_contig6484:8051..8182Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6484 8052..8182 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6484.17269.1prot_Ecto-sp13_S_contig6484.17269.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6484 3869..8182 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6484.17269.1

>prot_Ecto-sp13_S_contig6484.17269.1 ID=prot_Ecto-sp13_S_contig6484.17269.1|Name=mRNA_Ecto-sp13_S_contig6484.17269.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=639bp
MRQHSSSAARLSRWACDRALASRIAALGRRPTTSSAAGVNFSERPAEEEA
RAFLDRWYAAPLWGDVRQRRPSAYSAMIDRRLSNLGFGLDPGHRGRDDKP
RAPREMVKSDSHNGKKAISNNSSSTGLRRDSGLSNERGEGNSSEAGLRTG
SGRGLSSESYDRDGKEDGEGIFLVPTGRDGGGGGGNGSMKARELARSCLA
LSVARQANLWPLLRQLSDKKNTDKMGGGGGAGENSVLPVVYVAGELDPRY
GGCCGEVGGSGTSGSGGGVHCETRVGSANAANGTTPPPPFPSEQEGAVGG
GGCGADLSGVVKGTSVSEVGRVAGAGTGCAALASAAVVPGARTVAQAVQE
ACPGLSLCKLTERRGVLVRLEALLPRSPGMGVGREHEEGRRVWGVGEVTP
LPADGGDGRTPQEVGSPPPPWAAAAAAAAAAAAAAAAVTTSPVASSATAA
ATTTTTSATATATRPEGSSAEPTTAMTTTRSSPTRLLPSVRCGIEMAVVH
LAARAAGVSVGAAVSAASGLPCRGAVEINGLATRGEGVATGGSTEAGPRV
LKVKVGGVAGPSEDAARTVQLLRESGSPGSSRSSSISNISSTLRLDANQA
WTMDEALQFSAALGDAAATGAAPAVAAGRISRTRGGVVG
back to top

mRNA from alignment at Ecto-sp13_S_contig6484:3869..8182-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6484.17269.1 ID=mRNA_Ecto-sp13_S_contig6484.17269.1|Name=mRNA_Ecto-sp13_S_contig6484.17269.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4314bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6484:3869..8182- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGACAACACAGCAGTAGCGCGGCCAGGCTGTCGAGGTGGGCCTGCGA CCGCGCCCTGGCGTCTCGGATCGCTGCTCTTGGCCGCCGGCCGACAACGT CAAGCGCAGCCGGCGTCAATTTCAGCGAGAGGTACGATAGGTTTTACTTA CGTGATACGTCTCGCTGTTGTACATGCCAGCAGGGAGAGGTATTGTGTGC GTGTGTGATACGGTACGTCCCGGTGTTGTACCACCCCCTGCCTGTGTTTA GAGAAGGCTTTCCCCAAGGAGACCGAGCGTTTGTTGCCGGTTCGATGAAA CCGTTCACGCGTGCGGCGTGACTCGTGACGTTCAACCACGTAAAAGATCA CCGCGGGAATTTGAGAGTGAAACGAGCTGTTGCACCTACCCTGAGCAAAC GCGGTGCTCGACTGACTCTCAAGGGCGTGCGAGGTCGTTCCTTCGATGAA CGGAAGAAGGTAAAGAAGGAAAGCTTGACCGAGAAGGAGGGTCGGGGGTA CATTTGTTGGGTTGTTCTTTGTTGTTGTTGTTGTTGTTGCTGTTGTTATC GTTGGCTTTACATTAAACACCGTTCCGATCTCTGCCCAGTAGCTTGGAAC GTCCAAACTGGTCCGCCTGACTCGGACGCCTCACGTGGAAACACTGGCTA AATGCCCCAAAGAGGGGAGAGCCTACGTGAAAGATTACGACGGAAGAAAA AAAAAGGATTGGTGCGTGCCGAAGTAAGGTTTCATAAGGGCGCGTCCGTA TTTCGGTTTGCTCTCTGTTTGTTTGTCCACCCTCCCCCCCCCGTCATCCA GACCAGCAGAAGAAGAGGCACGGGCGTTCTTGGATCGCTGGTACGCCGCG CCGCTGTGGGGGGACGTGCGGCAGCGACGCCCTTCGGCGTACTCGGCGAT GATAGACCGTCGCTTGAGCAACCTGGGCTTCGGCCTCGACCCTGGCCACC GCGGCCGCGACGATAAGCCTCGTGCACCTCGGGAGATGGTCAAAAGCGAC AGCCACAACGGCAAGAAGGCTATCTCCAACAACAGTAGCAGCACCGGCCT GCGGCGGGATTCCGGGCTGAGTAACGAGCGTGGGGAAGGAAACAGCAGCG AGGCCGGACTTCGAACCGGCAGCGGTAGAGGTTTGAGCTCGGAAAGTTAC GATCGTGACGGGAAGGAGGATGGAGAGGGAATATTCTTGGTTCCGACGGG CCGGGACGGAGGCGGCGGCGGCGGTAACGGGAGCATGAAAGCTAGGGAGC TCGCACGGAGCTGCCTCGCCCTCAGCGTTGCCCGTCAGGCCAACCTCTGG CCCCTGCTGCGTCAACTCTCTGACAAGAAGAACACCGACAAGATGGGGGG CGGGGGAGGTGCCGGCGAGAACTCGGTGCTGCCCGTGGTGTATGTGGCCG GAGAGCTAGACCCCCGGTATGGCGGCTGCTGTGGCGAGGTCGGCGGTAGC GGTACTAGCGGTAGTGGTGGTGGAGTTCACTGTGAAACGCGGGTGGGATC GGCAAATGCAGCCAACGGAACCACACCACCACCGCCATTCCCCTCGGAAC AAGAGGGGGCGGTGGGCGGCGGCGGGTGTGGAGCGGATTTATCGGGCGTG GTTAAGGGTACCAGCGTTTCCGAGGTCGGGCGGGTGGCTGGGGCGGGGAC CGGCTGTGCGGCGCTTGCATCTGCTGCCGTGGTGCCGGGCGCGAGAACCG TGGCTCAAGCCGTGCAGGAGGCGTGTCCAGGAGTGCGCGTCGCCGTTGTC GCCGGCGCCGGGCACGCGGTGCCGACGGAGGCTCCTGCCGCTTTGTTCCG GGAGGTAGCGAAGCTGTCCGCCGTTGCCGCTGCGTGTGGTGGTGGTGGTG GTGGCGCTGCTACTTCTGCTTCTGTTGCTGCTGACTCTGGAACGGCGGCG GGGGTTGGAGAGGAGGAGAGAGTCGCGAAAATAACCCGATTCTCGCTGGA AGAGTTCTCCATTCCCTTGACGTCTCCGCTCCAGCTTAGCCTCTGCAAGC TGACAGAGCGGCGAGGAGTTCTTGTTCGGCTGGAGGCGTTACTCCCGCGG TCGCCGGGGATGGGAGTTGGACGAGAGCACGAGGAGGGGCGGCGGGTGTG GGGCGTGGGCGAGGTTACGCCGCTTCCGGGTGAGCCTTGTACAAGCCGCG ATATCGTTACCTTTTATGCACGTCAGAAGTTACTCCCCGGTCTTTCGGAC CAAGAGTTGTCCGACATGTTGTCTTCAGGAAAAACATTTTTGGAACAACT TTGGCGAAGGAGGGACGATTGGCCTTCGGTAATCGGTCTTGTGGGAACAC AATGCTCCGTCCTCTCGAGGACACCTGGTCAATGGTCTTAACAGCTGCAT GCAAAAACATGAGTACGCCCCCCCCCCCCCCCCCCCCCCTCGGCCAGGCT TCCACGAGGAAACCCTTGAAGAGGCAACCGCAAACCTCCGGTCCGTCTTG CCTTCACTAGTCGGCCGATCGACGTCGATCGAGCTTGCCGCTCTGGGCGC CGCTGACGGCGTCGACGGCGACGGCGAGAGTCGCCTCGACGCCTGGCTCA ACGCGGCGGTCGCCGCTGGTGCCGCCGCCCCTTCCGCCACCGCCGACGGC TCGGGCCCGGCGGCAGCTGATGGTGGTGACGGTCGCACACCGCAGGAGGT CGGGTCGCCGCCGCCGCCGTGGGCCGCGGCGGCTGCTGCTGCTGCTGCTG CTGCGGCGGCGGCGGCGGCGGTGACAACGTCACCGGTAGCATCATCGGCC ACGGCAGCAGCAACAACAACCACGACTTCAGCAACAGCAACAGCGACCCG TCCCGAGGGTTCTTCCGCGGAACCAACGACGGCAATGACGACGACACGGT CGTCGCCAACACGCCTGCTGCCGTCCGTCCGCTGCGGCATCGAGATGGCC GTGGTCCACCTCGCGGCCAGGGCGGCCGGGGTCAGCGTCGGGGCGGCGGT AAGCGCGGCGTCGGGGCTGCCGTGCAGGGGGGCCGTCGAGATCAACGGCT TGGCGACCCGAGGGGAGGGGGTGGCGACAGGCGGCAGCACGGAGGTGAGA GATCGATTTGAACCGTCGAGTGGCGTCTCGTGTATGTTTTCTCTTCTCTC TGACAACGAACAAAGTCGCCCGTGTCGCTGAGCACGACGGCTGGCTTTGG TGGAGTTTCGACTTTTGTGTGCGTTTTCCCTTCTCTGAGCCAGCAAAGTA GCCCGTGTCGCTGAATGCGGCGGCTTTGTCGGCTCGAAAGGAGGCTTTGA AGGGTACCAGCGAAAAGGGTTGAGCTCGTCGTGTTGTGCGCGATGGCGAT ATGCGATCCTTGGGGTGTATCTGCTTTGTCCGCGGCTATGTACAGAAGGT TTTGAAGCTCCGCGACGGGCAGGCGCAAGTGTCGGTGATGACGGGAGAGG CTCAACGTACGGCAATTGCCCATTAATTGCCCGTTAGAATACTTTTATGC GGCAAGAACGTGGGGTTGGTACTGCCCGCTGCATGTCGGGATCATAGTTG GTGGGAGGAGAGTTGGTGGGAGGCGAGGGCTTGCGTGGAGTGATGGCGGG TAACGAGAGGGTGATGGTATGGTTTGGGCTGGTTCATCTCTCGTATGTGT GTATGAGTCGCTGAATTATCTATCTCTTTCTCTTTTTTTTCTCACTCTCT CCCTGTCTCTCTCTCGTAGAAGCTCTCTTCGTCGCAGTAACAGTTTCAAA CCATCGTCGTTCCGTCCACGGGTATTAGCTCAAGGTTTCGTCCCACCAGT ACCAACAATAAGGGTACAAGTATGATACATACCAACCGTGGGGATACAAG TATGATATGCATATGCATATGAGCCTCCAATATCACATACCACACGCGAC GGGCAGATACCAGTACCTTCCCCCATCTTGTGCCCGTGTGCTACTGCGAG ACCCTGTGCTCCGCATCCAACAGAAGCGCTTGGGGATGCTTCAGTCCGAG GCACACAACCTAGCCTTGTACCCCCTCTCATTCACCCTCCTGCACCCCTT GCCTGTCTCTGACGAAAAAAACGCGTGCGAAGGCCGGGCCCCGTGTGCTT AAGGTGAAGGTGGGCGGCGTTGCTGGCCCTTCCGAAGATGCCGCGCGAAC TGTGCAACTCCTTCGAGAATCAGGGTCGCCGGGCAGCAGCAGGAGCAGCA GCATTAGCAACATAAGCAGCACCCTCAGGCTCGACGCGAATCAAGCTTGG ACAATGGACGAAGCTCTCCAGTTTTCAGCTGCTCTTGGTGATGCCGCCGC TACTGGTGCTGCGCCTGCCGTCGCCGCCGGGCGAATAAGTCGTACCAGAG GCGGCGTGGTGGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6484:3869..8182-

>mRNA_Ecto-sp13_S_contig6484.17269.1 ID=mRNA_Ecto-sp13_S_contig6484.17269.1|Name=mRNA_Ecto-sp13_S_contig6484.17269.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1917bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6484:3869..8182- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGACAACACAGCAGTAGCGCGGCCAGGCTGTCGAGGTGGGCCTGCGA
CCGCGCCCTGGCGTCTCGGATCGCTGCTCTTGGCCGCCGGCCGACAACGT
CAAGCGCAGCCGGCGTCAATTTCAGCGAGAGACCAGCAGAAGAAGAGGCA
CGGGCGTTCTTGGATCGCTGGTACGCCGCGCCGCTGTGGGGGGACGTGCG
GCAGCGACGCCCTTCGGCGTACTCGGCGATGATAGACCGTCGCTTGAGCA
ACCTGGGCTTCGGCCTCGACCCTGGCCACCGCGGCCGCGACGATAAGCCT
CGTGCACCTCGGGAGATGGTCAAAAGCGACAGCCACAACGGCAAGAAGGC
TATCTCCAACAACAGTAGCAGCACCGGCCTGCGGCGGGATTCCGGGCTGA
GTAACGAGCGTGGGGAAGGAAACAGCAGCGAGGCCGGACTTCGAACCGGC
AGCGGTAGAGGTTTGAGCTCGGAAAGTTACGATCGTGACGGGAAGGAGGA
TGGAGAGGGAATATTCTTGGTTCCGACGGGCCGGGACGGAGGCGGCGGCG
GCGGTAACGGGAGCATGAAAGCTAGGGAGCTCGCACGGAGCTGCCTCGCC
CTCAGCGTTGCCCGTCAGGCCAACCTCTGGCCCCTGCTGCGTCAACTCTC
TGACAAGAAGAACACCGACAAGATGGGGGGCGGGGGAGGTGCCGGCGAGA
ACTCGGTGCTGCCCGTGGTGTATGTGGCCGGAGAGCTAGACCCCCGGTAT
GGCGGCTGCTGTGGCGAGGTCGGCGGTAGCGGTACTAGCGGTAGTGGTGG
TGGAGTTCACTGTGAAACGCGGGTGGGATCGGCAAATGCAGCCAACGGAA
CCACACCACCACCGCCATTCCCCTCGGAACAAGAGGGGGCGGTGGGCGGC
GGCGGGTGTGGAGCGGATTTATCGGGCGTGGTTAAGGGTACCAGCGTTTC
CGAGGTCGGGCGGGTGGCTGGGGCGGGGACCGGCTGTGCGGCGCTTGCAT
CTGCTGCCGTGGTGCCGGGCGCGAGAACCGTGGCTCAAGCCGTGCAGGAG
GCGTGTCCAGGACTTAGCCTCTGCAAGCTGACAGAGCGGCGAGGAGTTCT
TGTTCGGCTGGAGGCGTTACTCCCGCGGTCGCCGGGGATGGGAGTTGGAC
GAGAGCACGAGGAGGGGCGGCGGGTGTGGGGCGTGGGCGAGGTTACGCCG
CTTCCGGCTGATGGTGGTGACGGTCGCACACCGCAGGAGGTCGGGTCGCC
GCCGCCGCCGTGGGCCGCGGCGGCTGCTGCTGCTGCTGCTGCTGCGGCGG
CGGCGGCGGCGGTGACAACGTCACCGGTAGCATCATCGGCCACGGCAGCA
GCAACAACAACCACGACTTCAGCAACAGCAACAGCGACCCGTCCCGAGGG
TTCTTCCGCGGAACCAACGACGGCAATGACGACGACACGGTCGTCGCCAA
CACGCCTGCTGCCGTCCGTCCGCTGCGGCATCGAGATGGCCGTGGTCCAC
CTCGCGGCCAGGGCGGCCGGGGTCAGCGTCGGGGCGGCGGTAAGCGCGGC
GTCGGGGCTGCCGTGCAGGGGGGCCGTCGAGATCAACGGCTTGGCGACCC
GAGGGGAGGGGGTGGCGACAGGCGGCAGCACGGAGGCCGGGCCCCGTGTG
CTTAAGGTGAAGGTGGGCGGCGTTGCTGGCCCTTCCGAAGATGCCGCGCG
AACTGTGCAACTCCTTCGAGAATCAGGGTCGCCGGGCAGCAGCAGGAGCA
GCAGCATTAGCAACATAAGCAGCACCCTCAGGCTCGACGCGAATCAAGCT
TGGACAATGGACGAAGCTCTCCAGTTTTCAGCTGCTCTTGGTGATGCCGC
CGCTACTGGTGCTGCGCCTGCCGTCGCCGCCGGGCGAATAAGTCGTACCA
GAGGCGGCGTGGTGGGG
back to top