mRNA_Ecto-sp13_S_contig64540.17227.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig64540.17227.1
Unique NamemRNA_Ecto-sp13_S_contig64540.17227.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig64540.17227.1 vs. uniprot
Match: D7FQB6_ECTSI (Ribosomal_S17_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB6_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 4.900e-51
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 1 
Query:    1 RCRQGLVISAGKMTNTIVIRRDYLHFVSKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEPCIN 243
            R  +GLVISAGKMTNTIVIRRDYLHFVSKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEPCIN
Sbjct:   99 RILKGLVISAGKMTNTIVIRRDYLHFVSKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEPCIN 179
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BLAST of mRNA_Ecto-sp13_S_contig64540.17227.1 vs. uniprot
Match: A0A835Z9X9_9STRA (Ribosomal protein S17-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9X9_9STRA)

HSP 1 Score: 141 bits (356), Expect = 2.320e-41
Identity = 63/81 (77.78%), Postives = 73/81 (90.12%), Query Frame = 1 
Query:    1 RCRQGLVISAGKMTNTIVIRRDYLHFVSKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEPCIN 243
            R  +GLV+SAGKM NT VIRRDYLH+V+KYRRFEKRHKN+ VH +PC+ NVKEGDI+T+GQCRPLSKT+RFN LEHEPCIN
Sbjct:   72 RILKGLVLSAGKMKNTCVIRRDYLHYVTKYRRFEKRHKNLMVHLSPCFPNVKEGDILTVGQCRPLSKTIRFNALEHEPCIN 152
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BLAST of mRNA_Ecto-sp13_S_contig64540.17227.1 vs. uniprot
Match: A0A7S2XWS0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWS0_9STRA)

HSP 1 Score: 131 bits (329), Expect = 3.020e-37
Identity = 60/81 (74.07%), Postives = 70/81 (86.42%), Query Frame = 1 
Query:    1 RCRQGLVISAGKMTNTIVIRRDYLHFVSKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEPCIN 243
            R  +GLVIS  KM NTI++RRDYLH++SKYRRFEKRHKNM VH +PC+  +KEGD+VTIGQCRPLSKTVRFNVLEH P +N
Sbjct:   74 RILKGLVIST-KMKNTIIVRRDYLHYISKYRRFEKRHKNMAVHASPCFDTIKEGDVVTIGQCRPLSKTVRFNVLEHLPSVN 153
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BLAST of mRNA_Ecto-sp13_S_contig64540.17227.1 vs. uniprot
Match: F0XZW5_AURAN (Ribosomal_S17_N domain-containing protein n=3 Tax=Pelagomonadales TaxID=54409 RepID=F0XZW5_AURAN)

HSP 1 Score: 129 bits (323), Expect = 2.610e-36
Identity = 59/81 (72.84%), Postives = 71/81 (87.65%), Query Frame = 1 
Query:    1 RCRQGLVISAGKMTNTIVIRRDYLHFVSKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEPCIN 243
            R  +G+VIS  KM  T+VIRRDYL++  KYRRFEKRHKNM+VHC+PC++NVKEGDIVT+GQCRPL+KTVRFNVL HEP +N
Sbjct:   76 RILKGMVIST-KMKRTLVIRRDYLNWCGKYRRFEKRHKNMSVHCSPCFENVKEGDIVTVGQCRPLTKTVRFNVLTHEPAVN 155
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BLAST of mRNA_Ecto-sp13_S_contig64540.17227.1 vs. uniprot
Match: A0A7R9U3I9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3I9_9STRA)

HSP 1 Score: 129 bits (324), Expect = 3.160e-36
Identity = 57/78 (73.08%), Postives = 69/78 (88.46%), Query Frame = 1 
Query:   10 QGLVISAGKMTNTIVIRRDYLHFVSKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEPCIN 243
            +G+VIS  KMT T+V+RRDYLHFV KY+R+EKRHKNMTVHC+P + NVK GD+VT+GQCRPLSKT+RFNVL HEP +N
Sbjct:   98 KGIVIS-NKMTRTVVVRRDYLHFVRKYKRYEKRHKNMTVHCSPAFTNVKPGDVVTVGQCRPLSKTIRFNVLVHEPAVN 174
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BLAST of mRNA_Ecto-sp13_S_contig64540.17227.1 vs. uniprot
Match: A0A812UUF3_SYMMI (RPS11 protein n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UUF3_SYMMI)

HSP 1 Score: 126 bits (316), Expect = 9.890e-36
Identity = 56/81 (69.14%), Postives = 70/81 (86.42%), Query Frame = 1 
Query:    1 RCRQGLVISAGKMTNTIVIRRDYLHFVSKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEPCIN 243
            R  +G+V+S  KM  T+VIRRDYL +V KYRRFEKRH NM+VHC+PC+QNV EGD+VT+GQCRPL+KTV+FNVLEH+P +N
Sbjct:   38 RILKGIVVST-KMKRTVVIRRDYLQYVRKYRRFEKRHANMSVHCSPCFQNVCEGDVVTVGQCRPLAKTVKFNVLEHQPAVN 117
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BLAST of mRNA_Ecto-sp13_S_contig64540.17227.1 vs. uniprot
Match: A0A7S1ZQ23_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZQ23_TRICV)

HSP 1 Score: 123 bits (309), Expect = 9.620e-35
Identity = 59/81 (72.84%), Postives = 70/81 (86.42%), Query Frame = 1 
Query:    1 RCRQGLVISAGKMTNTIVIRRDYLHFVSKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEPCIN 243
            R  +GLVIS  KM  TIVIRRDYLH++SKYRRFEKRHKN+ VHC+P ++ VKEGD+VTIGQCRPL+KTVRFNV+ HEP +N
Sbjct:   34 RILKGLVIST-KMKRTIVIRRDYLHYISKYRRFEKRHKNIAVHCSPAFE-VKEGDVVTIGQCRPLAKTVRFNVVAHEPAVN 112
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BLAST of mRNA_Ecto-sp13_S_contig64540.17227.1 vs. uniprot
Match: A0A7S1XVW4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVW4_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.180e-34
Identity = 56/78 (71.79%), Postives = 67/78 (85.90%), Query Frame = 1 
Query:   10 QGLVISAGKMTNTIVIRRDYLHFVSKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEPCIN 243
            +G+VIS  KM  TIV+RRDYLHFV KY+R+EKRHKN+T HC+PC+ NVK GD+VTIGQCRPL+KT+RFNVL HEP  N
Sbjct:   78 KGVVIS-NKMKRTIVVRRDYLHFVRKYKRYEKRHKNVTAHCSPCFVNVKPGDVVTIGQCRPLAKTIRFNVLTHEPSTN 154
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BLAST of mRNA_Ecto-sp13_S_contig64540.17227.1 vs. uniprot
Match: A0A4D9CZU0_9STRA (Ribosomal_S17_N domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZU0_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.570e-34
Identity = 57/81 (70.37%), Postives = 68/81 (83.95%), Query Frame = 1 
Query:    1 RCRQGLVISAGKMTNTIVIRRDYLHFVSKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEPCIN 243
            R  +G+V+S  KM  T++IRRDYLH+VSKY RFEKRHKN+  HC+P +  VKEGDIVT+GQCRPLSKTVRFNVL+HEP IN
Sbjct:   85 RILKGIVLST-KMNRTVIIRRDYLHWVSKYSRFEKRHKNLAAHCSPAFPQVKEGDIVTVGQCRPLSKTVRFNVLQHEPSIN 164
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BLAST of mRNA_Ecto-sp13_S_contig64540.17227.1 vs. uniprot
Match: A0A7S4WCA2_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4WCA2_9DINO)

HSP 1 Score: 124 bits (311), Expect = 1.630e-34
Identity = 56/81 (69.14%), Postives = 68/81 (83.95%), Query Frame = 1 
Query:    1 RCRQGLVISAGKMTNTIVIRRDYLHFVSKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEPCIN 243
            R  +GLVIS  KMT TI++RRDYLH++ KYRR+EKRHKN+ VHC+P +  V EGD+VTIGQCRPLSKTVRFNV+EH P +N
Sbjct:   74 RILKGLVIST-KMTRTIIVRRDYLHYIRKYRRYEKRHKNVAVHCSPAFDTVSEGDVVTIGQCRPLSKTVRFNVIEHLPTVN 153
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig64540.17227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQB6_ECTSI4.900e-5196.30Ribosomal_S17_N domain-containing protein n=1 Tax=... [more]
A0A835Z9X9_9STRA2.320e-4177.78Ribosomal protein S17-domain-containing protein n=... [more]
A0A7S2XWS0_9STRA3.020e-3774.07Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0XZW5_AURAN2.610e-3672.84Ribosomal_S17_N domain-containing protein n=3 Tax=... [more]
A0A7R9U3I9_9STRA3.160e-3673.08Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A812UUF3_SYMMI9.890e-3669.14RPS11 protein n=2 Tax=Symbiodinium microadriaticum... [more]
A0A7S1ZQ23_TRICV9.620e-3572.84Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1XVW4_9STRA1.180e-3471.79Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A4D9CZU0_9STRA1.570e-3470.37Ribosomal_S17_N domain-containing protein n=3 Tax=... [more]
A0A7S4WCA2_9DINO1.630e-3469.14Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig64540contigEcto-sp13_S_contig64540:78..762 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score169.5
Seed ortholog evalue6.6e-40
Seed eggNOG ortholog2880.D7FQB6
Preferred nameRPS11
Model size243
KEGG koko:K02949
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons2
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0186@1,KOG1728@2759
Cds size243
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463891.472181-CDS-Ecto-sp13_S_contig64540:77..2251681463891.472181-CDS-Ecto-sp13_S_contig64540:77..225Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig64540 78..225 -
1681463891.490227-CDS-Ecto-sp13_S_contig64540:667..7621681463891.490227-CDS-Ecto-sp13_S_contig64540:667..762Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig64540 668..762 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig64540.17227.1prot_Ecto-sp13_S_contig64540.17227.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig64540 78..762 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig64540.17227.1

>prot_Ecto-sp13_S_contig64540.17227.1 ID=prot_Ecto-sp13_S_contig64540.17227.1|Name=mRNA_Ecto-sp13_S_contig64540.17227.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp
RCRQGLVISAGKMTNTIVIRRDYLHFVSKYRRFEKRHKNMTVHCAPCWQN
VKEGDIVTIGQCRPLSKTVRFNVLEHEPCIN
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mRNA from alignment at Ecto-sp13_S_contig64540:78..762-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig64540.17227.1 ID=mRNA_Ecto-sp13_S_contig64540.17227.1|Name=mRNA_Ecto-sp13_S_contig64540.17227.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=685bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64540:78..762- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCTGTCGCCAGGGCCTGGTCATCTCCGCCGGCAAGATGACCAACACCAT
CGTCATCAGGCGTGACTACCTGCACTTCGTATCCAAGTACCGCCGGTAAG
CAAAGCGCACGTGCACCCGTCGCCGCTGCTGCGGGCCCTGTTGCCGTTTC
GGTTGGGGTTGGGTTCATACGTTGTTGGGTGGCGGGGAGTTGCGCGTGTA
CCGACGCAGACGTGTGGGTGAGCTAAATTTTGTTACATATGACGGCTGCG
CCCTGGTCATGGCTGATGGGGATGTGGTGTATGAGTTGCTTGATGAAGAC
GGAGACGCCTGAAAGAGAAGGAGGGTGGGGTGTCAAAGGATTTGATTCCC
GTTGTTGCTTCGCTTGACTCCTTGTCTTGTACCCAGGGGTTAGCAGATGT
CGATGAAGCCGATAATTCGACCGGTGGAAAGCGTCCGTTGCGTTTACACA
CTATTATTCCCGTCCTCGCGGCCGCTCTCGTTCGGTCATCTCACCTTGAC
TTTTGTTTTCCCAACGTGCGCGGTTGATGATCACCAGTTTCGAGAAGAGG
CACAAGAACATGACCGTGCACTGCGCTCCCTGCTGGCAAAACGTGAAGGA
GGGCGACATCGTGACGATCGGGCAGTGCCGGCCTCTGTCTAAGACCGTGC
GCTTCAACGTGCTCGAGCACGAGCCGTGCATCAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig64540:78..762-

>mRNA_Ecto-sp13_S_contig64540.17227.1 ID=mRNA_Ecto-sp13_S_contig64540.17227.1|Name=mRNA_Ecto-sp13_S_contig64540.17227.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64540:78..762- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCTGTCGCCAGGGCCTGGTCATCTCCGCCGGCAAGATGACCAACACCAT
CGTCATCAGGCGTGACTACCTGCACTTCGTATCCAAGTACCGCCGTTTCG
AGAAGAGGCACAAGAACATGACCGTGCACTGCGCTCCCTGCTGGCAAAAC
GTGAAGGAGGGCGACATCGTGACGATCGGGCAGTGCCGGCCTCTGTCTAA
GACCGTGCGCTTCAACGTGCTCGAGCACGAGCCGTGCATCAAC
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