mRNA_Ecto-sp13_S_contig64242.17186.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig64242.17186.1
Unique NamemRNA_Ecto-sp13_S_contig64242.17186.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig64242.17186.1 vs. uniprot
Match: A0A6H5KC85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC85_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.030e-20
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 HRDLKLENILIETGDKEGGPPAIKLIDFGLSAIYRENGVSTDILGS 138
            HRDLKLEN+LIETGDKEG PPAIKLIDFGLSAIYRENGVSTDILGS
Sbjct:   91 HRDLKLENVLIETGDKEGSPPAIKLIDFGLSAIYRENGVSTDILGS 136          
BLAST of mRNA_Ecto-sp13_S_contig64242.17186.1 vs. uniprot
Match: A0A3B4Y9A5_SERLL (Non-specific serine/threonine protein kinase n=1 Tax=Seriola lalandi dorsalis TaxID=1841481 RepID=A0A3B4Y9A5_SERLL)

HSP 1 Score: 49.7 bits (117), Expect = 1.060e-5
Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 1
Query:    1 HRDLKLENILIETGDKEGGPPAIKLIDFGLSAIYRENGVSTDILGS 138
            HRD+KLENILIETG      P ++LIDFGLS  +++  V  D  G+
Sbjct:  127 HRDIKLENILIETGSDV---PRVRLIDFGLSCFFKKRSVFQDFYGT 169          
BLAST of mRNA_Ecto-sp13_S_contig64242.17186.1 vs. uniprot
Match: A0A3B4YH28_SERLL (Non-specific serine/threonine protein kinase n=1 Tax=Seriola lalandi dorsalis TaxID=1841481 RepID=A0A3B4YH28_SERLL)

HSP 1 Score: 49.7 bits (117), Expect = 1.090e-5
Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 1
Query:    1 HRDLKLENILIETGDKEGGPPAIKLIDFGLSAIYRENGVSTDILGS 138
            HRD+KLENILIETG      P ++LIDFGLS  +++  V  D  G+
Sbjct:  122 HRDIKLENILIETGSDV---PRVRLIDFGLSCFFKKRSVFQDFYGT 164          
BLAST of mRNA_Ecto-sp13_S_contig64242.17186.1 vs. uniprot
Match: A0A3B4UJY4_SERDU (Serine/threonine-protein kinase pim-1-like n=6 Tax=Seriola TaxID=8160 RepID=A0A3B4UJY4_SERDU)

HSP 1 Score: 49.7 bits (117), Expect = 1.170e-5
Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 1
Query:    1 HRDLKLENILIETGDKEGGPPAIKLIDFGLSAIYRENGVSTDILGS 138
            HRD+KLENILIETG      P ++LIDFGLS  +++  V  D  G+
Sbjct:  324 HRDIKLENILIETGSDV---PRVRLIDFGLSCFFKKRSVFQDFYGT 366          
BLAST of mRNA_Ecto-sp13_S_contig64242.17186.1 vs. uniprot
Match: UPI001C04F95A (serine/threonine-protein kinase pim-1-like n=2 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C04F95A)

HSP 1 Score: 49.3 bits (116), Expect = 1.600e-5
Identity = 23/37 (62.16%), Postives = 29/37 (78.38%), Query Frame = 1
Query:    1 HRDLKLENILIETGDKEGGPPAIKLIDFGLSAIYREN 111
            HRD+KLENILIET   +   P ++LIDFG+S IY+EN
Sbjct:  324 HRDIKLENILIET---DSDIPRVRLIDFGMSCIYKEN 357          
BLAST of mRNA_Ecto-sp13_S_contig64242.17186.1 vs. uniprot
Match: A0A3Q3JH89_MONAL (Serine/threonine-protein kinase pim-1-like n=3 Tax=Monopterus albus TaxID=43700 RepID=A0A3Q3JH89_MONAL)

HSP 1 Score: 48.9 bits (115), Expect = 2.190e-5
Identity = 24/46 (52.17%), Postives = 29/46 (63.04%), Query Frame = 1
Query:    1 HRDLKLENILIETGDKEGGPPAIKLIDFGLSAIYRENGVSTDILGS 138
            HRD+KLENILIETG      P ++LIDFGLS  + E     D  G+
Sbjct:  268 HRDIKLENILIETGSDV---PHVRLIDFGLSCFFEETSCFNDFFGT 310          
BLAST of mRNA_Ecto-sp13_S_contig64242.17186.1 vs. uniprot
Match: A0A329RS88_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RS88_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 3.000e-5
Identity = 25/46 (54.35%), Postives = 30/46 (65.22%), Query Frame = 1
Query:    1 HRDLKLENILIETGDKEGGPPAIKLIDFGLSAIYRENGVSTDILGS 138
            HRDLKLENIL+ET D  G    IKL DFG S +++  G    +LGS
Sbjct:  150 HRDLKLENILVETLDNGG---RIKLCDFGASTLFKSGGSMRKVLGS 192          
BLAST of mRNA_Ecto-sp13_S_contig64242.17186.1 vs. uniprot
Match: UPI001C03B1BF (serine/threonine-protein kinase pim-1-like n=1 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C03B1BF)

HSP 1 Score: 47.8 bits (112), Expect = 5.370e-5
Identity = 23/37 (62.16%), Postives = 28/37 (75.68%), Query Frame = 1
Query:    1 HRDLKLENILIETGDKEGGPPAIKLIDFGLSAIYREN 111
            HRD+KLENILIET  ++   P ++LIDFGLS  Y EN
Sbjct:  146 HRDIKLENILIETDSEK---PQLRLIDFGLSCFYDEN 179          
BLAST of mRNA_Ecto-sp13_S_contig64242.17186.1 vs. uniprot
Match: UPI001C04496C (serine/threonine-protein kinase pim-1-like n=1 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C04496C)

HSP 1 Score: 47.8 bits (112), Expect = 5.600e-5
Identity = 23/37 (62.16%), Postives = 28/37 (75.68%), Query Frame = 1
Query:    1 HRDLKLENILIETGDKEGGPPAIKLIDFGLSAIYREN 111
            HRD+KLENILIET  ++   P ++LIDFGLS  Y EN
Sbjct:  238 HRDIKLENILIETDSEK---PQLRLIDFGLSCFYDEN 271          
BLAST of mRNA_Ecto-sp13_S_contig64242.17186.1 vs. uniprot
Match: UPI00148B8D36 (serine/threonine-protein kinase pim-1-like n=1 Tax=Hippoglossus hippoglossus TaxID=8267 RepID=UPI00148B8D36)

HSP 1 Score: 47.4 bits (111), Expect = 7.670e-5
Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 1
Query:    1 HRDLKLENILIETGDKEGGPPAIKLIDFGLSAIYRENGVSTDILGS 138
            HRD+K+ENILIETG      P I+LIDFGLS I +++ V +   G+
Sbjct:  245 HRDIKMENILIETGSTV---PQIRLIDFGLSMIGKQDSVHSKFCGT 287          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig64242.17186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5KC85_9PHAE1.030e-2095.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3B4Y9A5_SERLL1.060e-552.17Non-specific serine/threonine protein kinase n=1 T... [more]
A0A3B4YH28_SERLL1.090e-552.17Non-specific serine/threonine protein kinase n=1 T... [more]
A0A3B4UJY4_SERDU1.170e-552.17Serine/threonine-protein kinase pim-1-like n=6 Tax... [more]
UPI001C04F95A1.600e-562.16serine/threonine-protein kinase pim-1-like n=2 Tax... [more]
A0A3Q3JH89_MONAL2.190e-552.17Serine/threonine-protein kinase pim-1-like n=3 Tax... [more]
A0A329RS88_9STRA3.000e-554.35Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
UPI001C03B1BF5.370e-562.16serine/threonine-protein kinase pim-1-like n=1 Tax... [more]
UPI001C04496C5.600e-562.16serine/threonine-protein kinase pim-1-like n=1 Tax... [more]
UPI00148B8D367.670e-552.17serine/threonine-protein kinase pim-1-like n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig64242contigEcto-sp13_S_contig64242:497..634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size138
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size138
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463888.2136173-CDS-Ecto-sp13_S_contig64242:496..6341681463888.2136173-CDS-Ecto-sp13_S_contig64242:496..634Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig64242 497..634 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig64242.17186.1prot_Ecto-sp13_S_contig64242.17186.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig64242 497..634 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig64242.17186.1

>prot_Ecto-sp13_S_contig64242.17186.1 ID=prot_Ecto-sp13_S_contig64242.17186.1|Name=mRNA_Ecto-sp13_S_contig64242.17186.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=46bp
HRDLKLENILIETGDKEGGPPAIKLIDFGLSAIYRENGVSTDILGS
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mRNA from alignment at Ecto-sp13_S_contig64242:497..634-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig64242.17186.1 ID=mRNA_Ecto-sp13_S_contig64242.17186.1|Name=mRNA_Ecto-sp13_S_contig64242.17186.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64242:497..634- (Ectocarpus species13 EcNAP12_S_4_19m)
CATCGGGACCTCAAGCTGGAAAACATTCTGATAGAGACGGGAGACAAGGA GGGCGGCCCTCCGGCGATAAAGCTAATCGATTTCGGGTTGAGCGCCATTT ATCGAGAAAACGGCGTATCGACCGACATCTTGGGGAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig64242:497..634-

>mRNA_Ecto-sp13_S_contig64242.17186.1 ID=mRNA_Ecto-sp13_S_contig64242.17186.1|Name=mRNA_Ecto-sp13_S_contig64242.17186.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64242:497..634- (Ectocarpus species13 EcNAP12_S_4_19m)
CATCGGGACCTCAAGCTGGAAAACATTCTGATAGAGACGGGAGACAAGGA
GGGCGGCCCTCCGGCGATAAAGCTAATCGATTTCGGGTTGAGCGCCATTT
ATCGAGAAAACGGCGTATCGACCGACATCTTGGGGAGC
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