mRNA_Ecto-sp13_S_contig64023.17166.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig64023.17166.1
Unique NamemRNA_Ecto-sp13_S_contig64023.17166.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig64023.17166.1 vs. uniprot
Match: D8LBP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP2_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 6.990e-27
Identity = 69/75 (92.00%), Postives = 70/75 (93.33%), Query Frame = 2 
Query:    2 RPKDKSSTSSAVVLEAQRRARRRALSMQKRNTAEEERKTGALESAKKPLTVADIEQLKASRRAALARAASQIQKA 226
            RPKDKS  SSAVVLEAQRRARRRALSMQKR TAEEERK GALESAKKP TVADIE+LKASRRAALARAASQIQKA
Sbjct:  122 RPKDKSGMSSAVVLEAQRRARRRALSMQKRKTAEEERKAGALESAKKPPTVADIERLKASRRAALARAASQIQKA 196
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig64023.17166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBP2_ECTSI6.990e-2792.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig64023contigEcto-sp13_S_contig64023:2..606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size303
Hectar predicted targeting categoryother localisation
Exons2
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463886.1904187-CDS-Ecto-sp13_S_contig64023:1..1311681463886.1904187-CDS-Ecto-sp13_S_contig64023:1..131Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig64023 2..131 +
1681463886.2026465-CDS-Ecto-sp13_S_contig64023:433..6061681463886.2026465-CDS-Ecto-sp13_S_contig64023:433..606Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig64023 434..606 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig64023.17166.1prot_Ecto-sp13_S_contig64023.17166.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig64023 2..606 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig64023.17166.1

>prot_Ecto-sp13_S_contig64023.17166.1 ID=prot_Ecto-sp13_S_contig64023.17166.1|Name=mRNA_Ecto-sp13_S_contig64023.17166.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
ATQGQKQHEFCRRARSAETRPAQSPVDAKEKYRRGGTKNGSPRVGEETSN
RGRHRTAQGVPPRGAGKSSLPDTKGEEPETGGRGKVRRRETEEGGRSGTK
G
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mRNA from alignment at Ecto-sp13_S_contig64023:2..606+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig64023.17166.1 ID=mRNA_Ecto-sp13_S_contig64023.17166.1|Name=mRNA_Ecto-sp13_S_contig64023.17166.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=605bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64023:2..606+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGACCCAAGGACAAAAGCAGCACGAGTTCTGCCGTCGTGCTCGAAGCGC
AGAGACGCGCCCGGCGCAGAGCCCTGTCGATGCAAAAGAGAAATACCGCC
GAGGAGGAACGAAAAACGGGAGCCCTCGAGGTATGAACGAGTTACGCCAC
CCAAGTGCCGTGGCCTTGCGCTCTTTGCCCGTAGTGGACCAACACCGTCA
CACAAGCTTTGCGATTGCGGCTACTTGATTGGGAGAACCGCAGAAACGTA
ACCCAGATCCACAGGGAGATAGGTTCCTCGCAATCACTTGTCGTTTGACC
AGCATGTATGTGTGCACAACGACTGTATTTGTGAGGTGAAACTGTGTTGT
AGAGGACCGCTGCCCTTACACAACGTCATTCCACCGTCGTTCTTGAATTG
CGCTCCTGGTGGCTTCCCTTGTGGCATCCAAGTCGGCGAAGAAACCTCTA
ACCGTGGCCGACATCGAACAGCTCAAGGCGTCCCGCCGCGCGGCGCTGGC
AAGAGCAGCCTCCCAGATACAAAAGGCGAAGAGCCAGAAACAGGAGGCCG
AGGCAAGGTCCGAAGGAGAGAGACAGAAGAGGGAGGCCGAAGCGGCACGA
AAGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig64023:2..606+

>mRNA_Ecto-sp13_S_contig64023.17166.1 ID=mRNA_Ecto-sp13_S_contig64023.17166.1|Name=mRNA_Ecto-sp13_S_contig64023.17166.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64023:2..606+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGACCCAAGGACAAAAGCAGCACGAGTTCTGCCGTCGTGCTCGAAGCGC
AGAGACGCGCCCGGCGCAGAGCCCTGTCGATGCAAAAGAGAAATACCGCC
GAGGAGGAACGAAAAACGGGAGCCCTCGAGTCGGCGAAGAAACCTCTAAC
CGTGGCCGACATCGAACAGCTCAAGGCGTCCCGCCGCGCGGCGCTGGCAA
GAGCAGCCTCCCAGATACAAAAGGCGAAGAGCCAGAAACAGGAGGCCGAG
GCAAGGTCCGAAGGAGAGAGACAGAAGAGGGAGGCCGAAGCGGCACGAAA
GGC
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