mRNA_Ecto-sp13_S_contig640.17163.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig640.17163.1 vs. uniprot
Match: D8LQT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQT9_ECTSI) HSP 1 Score: 2524 bits (6541), Expect = 0.000e+0 Identity = 1527/1990 (76.73%), Postives = 1581/1990 (79.45%), Query Frame = 3
Query: 993 ACVGLSNRTMGDGARKQKTEEDHCSVNACRAGNFTSTTAVGKADSITTTGVDGDNGCSAEGRSSADRHDSSASDGRAAVAVVGDDADDDDFTGEVRRKSCCAASCWFACPCACHTATVVDTQLSSMAAEKGNDKTTEKRSVTVTSARSKGQGQGREVVLLPAVELGRDGADNGARVAALAADDVKRAFLATSESGAGPRKIHFGTAARYPLLGQPTGGGTRAADASSGSVKDIGGARSYDTSSAEAIIRPRVKGFQLSRRARDPTLARAESAATAVIAIAERRTCAPCSTVSVVGSGGRSPCATTRNGGGDFTEASQKGGQQTALSEVGSPGEGAVPEEGGEESQAAGTVGAAEVPAAVSDGEADMVTESPGGTPAGNATTAPREPAAAAQTEEDGSAREKPPVLPARQQPEDNAATSARTQQERAATASPLLSPGEPQARVTGAATTMNQQNLPQXXXXXXXXXXXXXXX--GSDSIVTGDDFLSHRSKVRAVVFPRPHTHQGRKRPAGPRGLEREGGAPGPGEYHVGGGACDGWGGAGRKGPSVAPKRMALKEKARVVVETRNVKEACRGGPGEYDIQRADNITRTRRVVGVVQMHPXXXXXRQARSAMLVAEIAGRNQTKSCSETKKRRVGRRRVSRSRGXXXXXXXXXXXXXXXXXXXXHGGGITARRVHGSTAPADSKAARRAGAGYSAVGHRRSSSSPSREECKGXXXXXXXXXXXXXXXXXXXXXXXXXXXRRIPRRQSSSKGRVRSGSRRPSREREGGRSSRPRRGFRWGGRSSCDSGKKRNTSGSNRTQREDRSRSCERGSRRLAWADDNVPRPSRDRGDGIYHSESHRYGNXXXXXXXXXXXXXXXXXXXQRNLPPHARYTRSSTTRRRXXXRNTERRWXXXXXXXXXXXXXFSPGQERSRQSAFETSESGSSVSFISXXXXXSPRRHGGRARFDSEGRRRQHQHRRDRGLEAD---FSSSAFGTIGRWWXXXXXXXXXXXXENGGPGRRHGAWGEDGATEPSRSSSSSCRDYSSSEGSNSSHSSGDGQWEEE-IDGVWRGFLTVSRRVPGGKFAPLERKGVGDKNRAAVERARLQREQERNVGYHDVRRSLTEKRAPSAVSFAAQAEATARERHRINMIRAKVQKRMGARLLHRAWASECEDMETREDGVSRGGEGRGRSVDDPTRRRTPGFRYVEETPLPVPAARQRAEREARERKRHGWMEVNIHQKWAETPRGGGGSDGGGEFGRTTGREKVEVKRKGEAKVKPFDRALRPVDAMGPGRYETEDLARTTRTGRLGDAPVPVMAVGVARKEAVGPRGERPEVAAEVDREDEGEEGGILVLDVPDDVTTHGRRRIPGGVLSYAPRWTSEKEGAKRDGEVLDIKPEAGRDVVGPRRDKGHRYLRFETQAGRGGGDGSITPTAAGGLSPGVANAFGLGVAVAAEGDVLVLSPRDPADVRPKVAVNLDKQVSRWSEGQGERGGSRTTRENTRNDDGDVLLLNPDHGAVRRKPTAAPAFDKQLGWREWQAADDLDERERREAWGSGGEEDEGGGRYEDDPVSRADRRRRPRLVTLVDIEKQQGQQERLQEDGNDFDDSLIPPPLELAYRDADYDTDPGIALTRPRAVGCTADMRRGTGRGTLADGGGGRGLGSPAAQEGEELILSPRWSFLATRPSQGAEWCRGSTTPRFLETLAGGLAEVTVEEGEGPSRLDLVGVEAARAKLSRWRGSAAVPPLDVDMSKIQSRPSSLFGIPERHERHAAPSGGAAAAFTDDELRDDRLMEGQRLQLHVGGGTTAPPRPRLVQGVRFGAARSSRTPTLLSPLLSVMPPSGREANTSTIVSPTAADSSAAGGNVVGLATEANKLAPPPVAQATETRRQLSNRGGEPENFVAAGDTQ-PRARVVGPGGAFPWRGDDDGGDGGRSVGGVRAVNSGNSSGSTRALKAALLSGTNFRRNLAG-ERIRRGGXXXXXXXXXXRGIEKEGRAEGGRGRVSKPGTCRTT 6938
ACVGLSNR GA K+KTEE+HCS N CRAGNFTSTTAVGKADSI +TGVDGDNGCSAEGRSSADRHDS ASDG AAVAVVGDD DDDDFTGEVRRKSCCAASCWFACPCACHT+TVVDT+LSS+A EKGNDK T++R VT ARSKGQGQG+EVVLLPA E G +GADNGARVAALAADDVKRAFLATSESGAGPRKIHFGTAARYPLLGQPTGG TRAADA SGSVKDI G RSYDTSS EAI RPRVKGFQ SRRARDPT+ARAES ATAVIAIAERR+ APCSTV V GSGG TR+GG D TEASQKG +QTAL EVG PGEGAVPEEGGEE QAAG GAA VPAAVSDGEA+ VT S GGTPAG ATTAPREPAAAAQTEED SA EKPPVLPA QQPED A SA Q ERA TASPLLS GEP A VTGAA TM QQ+LPQXXXXXXXXXXXXXXX GSDSIV GD+FLSHRSKVRAVVFPRPHTHQ RKRPAGPRGLEREGG+PGPGEYHV GGA DGWGGAGRKGP VAPKR+ALKEKARVVVETR VKEACRGGPGEY+IQ PRRQS SKGR+RSGSRRPSREREGGRSSRP RGFRWGGRSSC SGKKRNTSGSNRTQREDRSRS R RRLAWA+DNVPRP RDRG+GIYHSES R+G+XXXXXXXXXXXXXXXXXXX X XXXXXXXXXXXXX PGQERSRQSAFETSESGSSVSF+S SPRRHGGRARFD EGRRR +QHRRDRGLE+D XXXXXXXXXXXX CRDY +SSGDGQWEEE IDGVWRGFLTVSRRVPGG+FAPLERKGVGDKNRAAVERARLQRE+ERNVGY+DVRRSLTE+R PSAV+FAAQAEA ARERHR ++ +AKVQKRMGA LLHRAW SECEDMETREDGVSRGGE RGRSVDDPTRRRTPGFRYVEETPLPVPAARQRAEREARERKRH WMEVNIHQKW ETPRGGGGSDGGG+FGRTTGREKVEVKRKGEAKVKPFDRALRPVDAMGPGRYETEDLARTTRTGRLGDAPVPVMAVGVARKEAVGPRGERPEVAAE+DREDEGEEGG+LVLDVPDDVTT GRR +PGGVLSYAPRWTSEKEGAK DGEVLDIKPEAGRDVVGPRRDKGHRYLRFETQAGRGGGDGSITPTAAGGLSPGVAN FG GVAVAAEGDVLVLSPRDPADVRPKVAVNLDKQV RWSEGQGE GG RTTRENTRNDDGDVLLLNPDHGAVRRKPTAAPAFDKQLGWREWQAADDLDERERRE WGSGGEEDEGGG Y D PV RADRRRRPRLVTLVDIEKQQGQQERLQEDGNDF DSLIPPPLEL YRDADYDT+PG+ALTRPRAVG TADMR+GTG+G PAAQEG+ELILSPRWSFLATRPSQ AEW RGSTTPRFLETLAGGLAE TVEEGEG RLDLVGVEAARAKLSRWRGSAAVPPLDVDMSKIQSRPSSLFGIPERH RHAAPSGGAAAAFTDDELRDDRLMEGQRLQLHVG G+TA PRPRLVQGVRFGAARSSRTPTLLSPLL MP GR ANTS V+PTAA SSAAGG+ VGLATEAN+ APPPVAQA TR QLSNR G PEN V AGDT P ARVVGPGG FPWR DDDGGDGGRSVGGVRAVNSG S S+RA KAALL+GTNFRRNLAG ER+ RGGXXXXXXXXXXRGIEKEGRAEGGRGRVSKPGT +T
Sbjct: 330 ACVGLSNRATDGGAGKRKTEENHCSFNDCRAGNFTSTTAVGKADSIASTGVDGDNGCSAEGRSSADRHDSGASDGTAAVAVVGDDPDDDDFTGEVRRKSCCAASCWFACPCACHTSTVVDTELSSIATEKGNDKITDRRRVTGIPARSKGQGQGQEVVLLPAAEPGMNGADNGARVAALAADDVKRAFLATSESGAGPRKIHFGTAARYPLLGQPTGGSTRAADAGSGSVKDISGPRSYDTSSTEAITRPRVKGFQFSRRARDPTVARAESTATAVIAIAERRSRAPCSTVFVGGSGGXXXXXXTRDGG-DSTEASQKG-RQTALWEVGGPGEGAVPEEGGEEIQAAGAAGAAGVPAAVSDGEAETVTGSLGGTPAGKATTAPREPAAAAQTEEDDSAHEKPPVLPAWQQPEDEAVASASKQPERATTASPLLSSGEPAACVTGAAATMTQQDLPQXXXXXXXXXXXXXXXXXGSDSIVAGDEFLSHRSKVRAVVFPRPHTHQARKRPAGPRGLEREGGSPGPGEYHVRGGAGDGWGGAGRKGPLVAPKRIALKEKARVVVETRKVKEACRGGPGEYEIQS----------------------------------------------------------------------------------------------------------------------------------------------------------------PRRQSGSKGRLRSGSRRPSREREGGRSSRPLRGFRWGGRSSCGSGKKRNTSGSNRTQREDRSRSGVREPRRLAWAEDNVPRPPRDRGNGIYHSESRRHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----XXXXXXXXXXXXXXXXXXXXXCLPGQERSRQSAFETSESGSSVSFLSSSPSSSPRRHGGRARFDGEGRRRHYQHRRDRGLESDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCRDYXXXXXXXXXYSSGDGQWEEEEIDGVWRGFLTVSRRVPGGRFAPLERKGVGDKNRAAVERARLQRERERNVGYYDVRRSLTEERVPSAVNFAAQAEAMARERHRTSLRQAKVQKRMGAGLLHRAWVSECEDMETREDGVSRGGEARGRSVDDPTRRRTPGFRYVEETPLPVPAARQRAEREARERKRHDWMEVNIHQKWVETPRGGGGSDGGGDFGRTTGREKVEVKRKGEAKVKPFDRALRPVDAMGPGRYETEDLARTTRTGRLGDAPVPVMAVGVARKEAVGPRGERPEVAAEMDREDEGEEGGVLVLDVPDDVTTRGRRHVPGGVLSYAPRWTSEKEGAKWDGEVLDIKPEAGRDVVGPRRDKGHRYLRFETQAGRGGGDGSITPTAAGGLSPGVANGFGFGVAVAAEGDVLVLSPRDPADVRPKVAVNLDKQVPRWSEGQGEGGGRRTTRENTRNDDGDVLLLNPDHGAVRRKPTAAPAFDKQLGWREWQAADDLDERERREVWGSGGEEDEGGGCYGDGPVERADRRRRPRLVTLVDIEKQQGQQERLQEDGNDFGDSLIPPPLELTYRDADYDTEPGMALTRPRAVGGTADMRQGTGKGXXXXXXXXXXXXXPAAQEGDELILSPRWSFLATRPSQAAEWRRGSTTPRFLETLAGGLAEATVEEGEGSPRLDLVGVEAARAKLSRWRGSAAVPPLDVDMSKIQSRPSSLFGIPERHVRHAAPSGGAAAAFTDDELRDDRLMEGQRLQLHVGSGSTATPRPRLVQGVRFGAARSSRTPTLLSPLLLAMPLPGRRANTSA-VTPTAAASSAAGGDAVGLATEANEPAPPPVAQAAATR-QLSNRRGGPEN-VTAGDTLIPGARVVGPGGTFPWRSDDDGGDGGRSVGGVRAVNSGKSRSSSRASKAALLAGTNFRRNLAGGERVSRGGXXXXXXXXXXRGIEKEGRAEGGRGRVSKPGTHTST 2149 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig640.17163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig640.17163.1 >prot_Ecto-sp13_S_contig640.17163.1 ID=prot_Ecto-sp13_S_contig640.17163.1|Name=mRNA_Ecto-sp13_S_contig640.17163.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=2034bp MSGRRDGGEAGETETAAAELLVQEIPVSEKCSVPMDKDQEEKEGGGGGGGback to top mRNA from alignment at Ecto-sp13_S_contig640:796..19357- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig640.17163.1 ID=mRNA_Ecto-sp13_S_contig640.17163.1|Name=mRNA_Ecto-sp13_S_contig640.17163.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=18562bp|location=Sequence derived from alignment at Ecto-sp13_S_contig640:796..19357- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig640:796..19357- >mRNA_Ecto-sp13_S_contig640.17163.1 ID=mRNA_Ecto-sp13_S_contig640.17163.1|Name=mRNA_Ecto-sp13_S_contig640.17163.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=6102bp|location=Sequence derived from alignment at Ecto-sp13_S_contig640:796..19357- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |