mRNA_Ecto-sp13_S_contig6391.17152.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6391.17152.1
Unique NamemRNA_Ecto-sp13_S_contig6391.17152.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6391.17152.1 vs. uniprot
Match: D7G4L2_ECTSI (MsrB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4L2_ECTSI)

HSP 1 Score: 652 bits (1682), Expect = 2.120e-230
Identity = 318/326 (97.55%), Postives = 323/326 (99.08%), Query Frame = 2 
Query:    2 GLSSKLEVVGVDPESEFELSKAMEKSQSVVCALGASESEPFNVKGPYQVDGKLSQKLVLAAKETASVKHFVLVTALGTGKFGWPASALNLFWGILSWKRKTEKALIDSGIPYTILRPGGMEKPGDDFEQTHNVRVASKDTLFGGVVSRLQVAKLATAAVVAPDSSTNKVMEIVAEDLAPKKTYTELVENARDDQPDETWKNKLSPDQYYVLRMGGTEPSFTSPLNKEKREGVFVCAGCGQELYDSSTKYNSGTGWPSFFAPVSEEAVRVVREGGLFPRREVRCSNCDGHLGHVFPDGPKPTGLRYCMNGVAMGFKPEEDMAEKEIA 979
            GLSSKLEVVGVDPESEFELSKAM+KSQSVVCALGASESEPFNVKGPYQVDGKLSQKLVLAAKET SVKHFVLVTALGTGKFGWPASALNLFWGILSWKRKTEKALIDSGIPYTILRPGGMEKPGDDFEQTHNVRVASKDTLFGGVVSRLQVAKLA AAVVAPDSSTNKVME+VAEDLAPKKTYTELV+NARDDQPDETWKNKLSPDQYYVLRMGGTEPSFTSPLNKEKREGVFVCAGCGQELYDSSTKYNSGTGWPSFFAPVSEEAVRVVREGGLFPRREVRCSNCDGHLGHVFPDGPKPTGLRYCMNGVAMGF+P+EDMAEKE A
Sbjct:   40 GLSSKLEVVGVDPESEFELSKAMDKSQSVVCALGASESEPFNVKGPYQVDGKLSQKLVLAAKETPSVKHFVLVTALGTGKFGWPASALNLFWGILSWKRKTEKALIDSGIPYTILRPGGMEKPGDDFEQTHNVRVASKDTLFGGVVSRLQVAKLAAAAVVAPDSSTNKVMEVVAEDLAPKKTYTELVDNARDDQPDETWKNKLSPDQYYVLRMGGTEPSFTSPLNKEKREGVFVCAGCGQELYDSSTKYNSGTGWPSFFAPVSEEAVRVVREGGLFPRREVRCSNCDGHLGHVFPDGPKPTGLRYCMNGVAMGFEPKEDMAEKETA 365
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BLAST of mRNA_Ecto-sp13_S_contig6391.17152.1 vs. uniprot
Match: A0A6H5KIF4_9PHAE (MsrB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIF4_9PHAE)

HSP 1 Score: 644 bits (1661), Expect = 1.930e-225
Identity = 315/328 (96.04%), Postives = 323/328 (98.48%), Query Frame = 2 
Query:    2 GLSSKLEVVGVDPESEFELSKAMEKSQSVVCALGASESEPFNVKGPYQVDGKLSQKLVLAAKETASVKHFVLVTALGTGKFGWPASALNLFWGILSWKRKTEKALIDSGIPYTILR--PGGMEKPGDDFEQTHNVRVASKDTLFGGVVSRLQVAKLATAAVVAPDSSTNKVMEIVAEDLAPKKTYTELVENARDDQPDETWKNKLSPDQYYVLRMGGTEPSFTSPLNKEKREGVFVCAGCGQELYDSSTKYNSGTGWPSFFAPVSEEAVRVVREGGLFPRREVRCSNCDGHLGHVFPDGPKPTGLRYCMNGVAMGFKPEEDMAEKEIA 979
            GLSSKLEVVGVDPESEFELSKAMEKSQSVVCALGASESEPFNVKGPYQVDGKLSQKLVLAAKET SVKHF+LVTALGTGKFGWPASALNLFWGILSWKRKTEKALIDSGIPYTI+R  PGGMEKPGDDFEQTHNVRVASKDTLFGGVVSRLQVAKLA AAVVAPDSSTNKVME+VAEDLAPKKTY++LVE+ARDDQPDETWKNKLSPDQYYVLRMGGTEPSFTSPLNKEKREGVFVCAGCGQELYDSSTKYNSGTGWPSFFAPVSEEAVRVVREGGLFPRREVRCSNCDGHLGHVFPDGPKPTGLRYCMNGVAMGFKP+EDMAE+E A
Sbjct:  149 GLSSKLEVVGVDPESEFELSKAMEKSQSVVCALGASESEPFNVKGPYQVDGKLSQKLVLAAKETPSVKHFILVTALGTGKFGWPASALNLFWGILSWKRKTEKALIDSGIPYTIIRRAPGGMEKPGDDFEQTHNVRVASKDTLFGGVVSRLQVAKLAAAAVVAPDSSTNKVMEVVAEDLAPKKTYSDLVESARDDQPDETWKNKLSPDQYYVLRMGGTEPSFTSPLNKEKREGVFVCAGCGQELYDSSTKYNSGTGWPSFFAPVSEEAVRVVREGGLFPRREVRCSNCDGHLGHVFPDGPKPTGLRYCMNGVAMGFKPKEDMAERETA 476
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BLAST of mRNA_Ecto-sp13_S_contig6391.17152.1 vs. uniprot
Match: A0A835ZI62_9STRA (Mss4-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI62_9STRA)

HSP 1 Score: 377 bits (968), Expect = 1.290e-122
Identity = 184/320 (57.50%), Postives = 227/320 (70.94%), Query Frame = 2 
Query:    8 SSKLEVVGVDPESEFELSKAMEKSQSVVCALGASESEPFNVKGPYQVDGKLSQKLVLAAKETASVKHFVLVTALGTGKFGWPASALNLFWGILSWKRKTEKALIDSGIPYTILRPGGMEKPGDDFEQTHNVRVASKDTLFGGVVSRLQVAKLATAAVVAPDSSTNKVMEIVAEDLAPKKTYTELVENARDDQPDETWKNKLSPDQYYVLRMGGTEPSFTSPLNKEKREGVFVCAGCGQELYDSSTKYNSGTGWPSFFAPVSEEAVRVVREGGL-FPRREVRCSNCDGHLGHVFPDGPKPTGLRYCMNGVAMGFKPEEDMA 964
            SS ++VV  D   E  L +A+E   +VVCALGA E+E  N  GPY VDG+ +Q L+ AAK T SVKH +LVT+LGT KFG PA  LNLFWG+L WK ++E  L  SG+PYTI+RPGGME+P D++E THNVR+A +DT FGG VSRLQVAKL   A   P+ +  K +E+VAE  APK+ Y +L+      + D  WK +LSP  Y+VLR  GTE  +TSPLN+EKREGVF CAGCGQ L+ S  K+NSGTGWPSFF PV  +AV  + +  L  PR EVRCS+CDGHLGH+F DGP+PTG R+CMNG A+ F P E  A
Sbjct:   19 SSGVDVVEYDLSDEKALQRAIEGCSTVVCALGALENEVLNPFGPYTVDGRYTQNLINAAKATPSVKHMILVTSLGTAKFGMPAGILNLFWGVLKWKHQSELLLAGSGLPYTIIRPGGMERPTDEYELTHNVRLARQDTFFGGQVSRLQVAKLVAVAAAQPEIAAGKTVEVVAETDAPKRDYADLLREFTPSKSDAEWKQELSPLAYHVLREEGTERPWTSPLNEEKREGVFKCAGCGQALFASGAKFNSGTGWPSFFEPVDGKAVNKLVDMKLGMPRTEVRCSSCDGHLGHLFDDGPRPTGQRFCMNGAALSFDPSESAA 338
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BLAST of mRNA_Ecto-sp13_S_contig6391.17152.1 vs. uniprot
Match: A0A6U1QLD2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QLD2_9STRA)

HSP 1 Score: 370 bits (951), Expect = 1.160e-118
Identity = 179/322 (55.59%), Postives = 239/322 (74.22%), Query Frame = 2 
Query:    2 GLSSKLEVVGVDPESEFELSKAMEKSQSVVCALGASESEPFNVKGPYQVDGKLSQKLVLAAKETA-SVKHFVLVTALGTGKFGWPASALNLFWGILSWKRKTEKALIDSGIPYTILRPGGMEKPGDDFEQTHNVRVASKDTLFGGVVSRLQVAKLATAAVVAPDSSTNKVMEIVAEDLAPKKTYTELVENARDDQPDETWKNKLSPDQYYVLRMGGTEPSFTSPLNKEKREGVFVCAGCGQELYDSSTKYNSGTGWPSFFAPVSEE---AVRVVREGGLFPRREVRCSNCDGHLGHVFPDGPKPTGLRYCMNGVAMGFKPEE 955
            GL+  LE+  +D E++ ++S+A++   +VV ALGA E+E  +   PY+VDG L+Q L+ A+ E   +VKHF++V++LGTGK G+PAS LNLFWG+L+WKR++EK L  SGIPYTI+RPGGME+P DDFE THN+++ + DT FGG VSRLQVAKL +A +  PD++ NK++E+VAE  APKK ++ L+E   +   DE W+ +L+  QY VLR   TEP +TSPLN EKR G FVC+GCG  L+ S  K++SGTGWPSFF P++ E   A++V    G+ PR EV C  C+GHLGHVF DGP+PTGLRYCMNGVAM F P+E
Sbjct:  111 GLTDSLELYPIDLENQSQISEALKDCDAVVSALGALETEALDWTAPYRVDGTLTQNLIKASMEQKEAVKHFIMVSSLGTGKIGFPASVLNLFWGVLTWKRQSEKLLESSGIPYTIVRPGGMERPKDDFELTHNIKLQAADTTFGGNVSRLQVAKLVSAILQQPDTTANKIIEVVAETQAPKKEFSVLLEEVCNAPTDEEWRARLNLAQYQVLRKAATEPPYTSPLNYEKRSGDFVCSGCGHPLFRSEAKFDSGTGWPSFFQPINNEDSVALKVDYSLGM-PRMEVLCGACEGHLGHVFRDGPRPTGLRYCMNGVAMQFSPDE 431
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BLAST of mRNA_Ecto-sp13_S_contig6391.17152.1 vs. uniprot
Match: A0A250X437_9CHLO (NAD(P)-bd_dom domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X437_9CHLO)

HSP 1 Score: 201 bits (511), Expect = 1.150e-54
Identity = 99/187 (52.94%), Postives = 133/187 (71.12%), Query Frame = 2 
Query:    8 SSKLEVVGVDPESEFELSKAMEKSQSVVCALGASESEPFNVKGPYQVDGKLSQKLVLAAKETASVKHFVLVTALGTGKFGWPASALNLFWGILSWKRKTEKALIDSGIPYTILRPGGMEKPGDDFEQTHNVRVASKDTLFGGVVSRLQVAKLATAAVVAPDSSTNKVMEIVAEDLAPKKTYTELVEN 568
            + ++EVV  D E    + +A+  +  VVCA+GA E +  +  GP ++DG+ +  L+L A E  SV+HFVLVT+LGTGKFG PA  LNLFWG+L+WKRK E+AL  SG+PYTI+RPGGME+P DD++ THN+    KDT FGG VSRLQVA+L  AA+  P  + NKV+E+VAE  APK  +  L+E+
Sbjct:  140 AGRIEVVAFDLEDSESIKQALNGASRVVCAVGAPEDQVLDSTGPRRIDGEGTINLILTAAEARSVEHFVLVTSLGTGKFGLPAGLLNLFWGVLTWKRKAEEALEMSGMPYTIIRPGGMERPKDDYKNTHNLIFKEKDTAFGGQVSRLQVAELVAAAIQYPTLAANKVLEVVAETTAPKLPFPSLLES 326
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BLAST of mRNA_Ecto-sp13_S_contig6391.17152.1 vs. uniprot
Match: A0A445E3Q2_ARAHY (NAD(P)-bd_dom domain-containing protein n=1 Tax=Arachis hypogaea TaxID=3818 RepID=A0A445E3Q2_ARAHY)

HSP 1 Score: 194 bits (492), Expect = 9.380e-52
Identity = 100/223 (44.84%), Postives = 146/223 (65.47%), Query Frame = 2 
Query:   14 KLEVVGVDPESEFELSKAMEKSQSVVCALGASESEPFNVKGPYQVDGKLSQKLVLAAKETASVKHFVLVTALGTGKFGWPASALNLFWGILSWKRKTEKALIDSGIPYTILRPGGMEKPGDDFEQTHNVRVASKDTLFGGVVSRLQVAKLATAAVVAPDSSTNKVMEIVAEDLAPKKTYTELVENARDDQPDETWKNKLSPDQYYVLRMGGTEPSFTSPLNKE 682
            KLE+V  D E   ++  A+  + +V+C++GASE E F++ GPY++D + ++ L+ AA   A V HF+LVT+LGT KFG PA+ LNLFWG+L WKRK E+AL+ SG+PYTI+RPGGME+P D +++THN+ ++++DTLFGG VS LQVA+L       PD +  K++E+VAE  AP     EL+      +P  +   K  PD   +     +EP+  +   KE
Sbjct:  176 KLEIVECDLEKPDQIGPALGNASTVICSIGASEKEVFDITGPYRIDYRATKSLIDAAT-VAKVNHFILVTSLGTNKFGLPAAILNLFWGVLIWKRKAEEALLASGLPYTIVRPGGMERPTDSYKETHNLTLSTEDTLFGGQVSNLQVAELMAVMAKNPDLAYCKIVEVVAETTAPLTPTEELLAKIPSQRPYISSPKK--PDAAAISDPAPSEPAIATATEKE 395
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BLAST of mRNA_Ecto-sp13_S_contig6391.17152.1 vs. uniprot
Match: D8RQE1_SELML (NAD(P)-bd_dom domain-containing protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RQE1_SELML)

HSP 1 Score: 191 bits (486), Expect = 1.010e-51
Identity = 96/183 (52.46%), Postives = 131/183 (71.58%), Query Frame = 2 
Query:   14 KLEVVGVDPESEFELSKAMEKSQSVVCALGASESEPFNVKGPYQVDGKLSQKLVLAAKETASVKHFVLVTALGTGKFGWPASALNLFWGILSWKRKTEKALIDSGIPYTILRPGGMEKPGDDFEQTHNVRVASKDTLFGGVVSRLQVAKLATAAVVAPDSSTNKVMEIVAEDLAPKKTYTELV 562
            +LE++  D E   E+  A+  S  V+CA+GASE E  +V GPY++D + ++ L+ AAK  A VKHF+LVT+LGT KFG PAS LNLFWG+L WK K EKALIDSG+ YTI+RPGGME+P D F++THN+R+A KDT  GG VSRLQVA+L        + + +K++E +AE  AP ++  +L+
Sbjct:  116 QLEIIDCDLEKPDEIESALGNSGVVICAIGASEKEVLDVTGPYRIDYEATKNLIAAAKN-AEVKHFILVTSLGTTKFGLPASVLNLFWGVLIWKAKAEKALIDSGLAYTIVRPGGMERPTDAFKETHNLRLAPKDTFTGGQVSRLQVAELLACIANNLELAEDKILEAIAETSAPLRSLEDLL 297
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BLAST of mRNA_Ecto-sp13_S_contig6391.17152.1 vs. uniprot
Match: A0A231UUW4_9HYPH (Peptide-methionine (R)-S-oxide reductase n=3 Tax=Notoacmeibacter marinus TaxID=1876515 RepID=A0A231UUW4_9HYPH)

HSP 1 Score: 184 bits (466), Expect = 1.680e-51
Identity = 81/122 (66.39%), Postives = 97/122 (79.51%), Query Frame = 2 
Query:  596 WKNKLSPDQYYVLRMGGTEPSFTSPLNKEKREGVFVCAGCGQELYDSSTKYNSGTGWPSFFAPVSEEAVRVVREGGLFP-RREVRCSNCDGHLGHVFPDGPKPTGLRYCMNGVAMGFKPEED 958
            WK+ LSP+++ VLR  GTE + +SPLN EKR GVFVCAGCG+EL+ S  KY SGTGWPSF+ PV E AV   ++  LF  R EVRC+ CDGHLGHVFPDGP+PTGLRYCMNGVAM F+PE++
Sbjct:   15 WKDLLSPEEFRVLRKHGTERAGSSPLNHEKRHGVFVCAGCGKELFSSDAKYESGTGWPSFYQPVGEGAVTTHKDRSLFMVRTEVRCAQCDGHLGHVFPDGPQPTGLRYCMNGVAMNFEPEDE 136
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BLAST of mRNA_Ecto-sp13_S_contig6391.17152.1 vs. uniprot
Match: E0MPG8_9HYPH (Peptide methionine sulfoxide reductase MsrB n=1 Tax=Ahrensia sp. R2A130 TaxID=744979 RepID=E0MPG8_9HYPH)

HSP 1 Score: 181 bits (458), Expect = 2.150e-50
Identity = 77/129 (59.69%), Postives = 102/129 (79.07%), Query Frame = 2 
Query:  578 DQPDETWKNKLSPDQYYVLRMGGTEPSFTSPLNKEKREGVFVCAGCGQELYDSSTKYNSGTGWPSFFAPVSEEAVRVVREGGLFPRR-EVRCSNCDGHLGHVFPDGPKPTGLRYCMNGVAMGFKPEEDM 961
            D+ D  W+ +L+P+Q+YVLR  GTE +FTSPLN EKR+G+F+CAGC + L+ + TK++SGTGWPSF+AP+  +AV    +  LF +R EVRC++C GHLGHVFPDGP+PTG RYCMNG+AM F PE D+
Sbjct:    5 DKTDSQWREELTPEQFYVLREEGTERAFTSPLNDEKRDGLFICAGCEKPLFKAETKFDSGTGWPSFYAPIDADAVSEHTDRKLFMKRTEVRCADCGGHLGHVFPDGPRPTGQRYCMNGIAMQFDPEGDV 133
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BLAST of mRNA_Ecto-sp13_S_contig6391.17152.1 vs. uniprot
Match: A0A2A4LFM5_9HYPH (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A2A4LFM5_9HYPH)

HSP 1 Score: 180 bits (456), Expect = 3.900e-50
Identity = 79/124 (63.71%), Postives = 98/124 (79.03%), Query Frame = 2 
Query:  587 DETWKNKLSPDQYYVLRMGGTEPSFTSPLNKEKREGVFVCAGCGQELYDSSTKYNSGTGWPSFFAPVSEEAVRVVREGGLFPRR-EVRCSNCDGHLGHVFPDGPKPTGLRYCMNGVAMGFKPEE 955
            D  WK  LS +QYYVLR  GTE + +SPLN+EKR G+FVCAGCG+ L+D+ TK+ SG+GWPSFF PV++ AV    +  LF +R EVRC+NCDGHLGHVFPDGP+PTG RYCMNG A+ F+P+E
Sbjct:    8 DTQWKEHLSEEQYYVLRKEGTERANSSPLNQEKRAGMFVCAGCGEALFDAGTKFESGSGWPSFFQPVAQAAVTENTDRKLFVKRTEVRCANCDGHLGHVFPDGPQPTGQRYCMNGAALDFEPKE 131
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6391.17152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4L2_ECTSI2.120e-23097.55MsrB domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KIF4_9PHAE1.930e-22596.04MsrB domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835ZI62_9STRA1.290e-12257.50Mss4-like protein n=1 Tax=Tribonema minus TaxID=30... [more]
A0A6U1QLD2_9STRA1.160e-11855.59Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A250X437_9CHLO1.150e-5452.94NAD(P)-bd_dom domain-containing protein n=1 Tax=Ch... [more]
A0A445E3Q2_ARAHY9.380e-5244.84NAD(P)-bd_dom domain-containing protein n=1 Tax=Ar... [more]
D8RQE1_SELML1.010e-5152.46NAD(P)-bd_dom domain-containing protein n=2 Tax=Se... [more]
A0A231UUW4_9HYPH1.680e-5166.39Peptide-methionine (R)-S-oxide reductase n=3 Tax=N... [more]
E0MPG8_9HYPH2.150e-5059.69Peptide methionine sulfoxide reductase MsrB n=1 Ta... [more]
A0A2A4LFM5_9HYPH3.900e-5063.71Peptide-methionine (R)-S-oxide reductase n=1 Tax=H... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6391contigEcto-sp13_S_contig6391:670..7734 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score612.8
Seed ortholog evalue8.4e-173
Seed eggNOG ortholog2880.D7G4L2
Model size1981
KEGG koko:K07305
Hectar predicted targeting categoryother localisation
GOsGO:0000229,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005739,GO:0006807,GO:0006950,GO:0006979,GO:0007623,GO:0008150,GO:0008152,GO:0009295,GO:0009507,GO:0009508,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009636,GO:0009941,GO:0009987,GO:0016020,GO:0016491,GO:0016667,GO:0016671,GO:0019538,GO:0030091,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0033554,GO:0033743,GO:0034357,GO:0034599,GO:0042221,GO:0042644,GO:0042646,GO:0042651,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0048511,GO:0050896,GO:0051716,GO:0055035,GO:0055114,GO:0070887,GO:0071704,GO:0097237,GO:0098552,GO:0098572,GO:0098754,GO:1901564,GO:1990748
Exons10
EggNOG free text desc.peptide-methionine (R)-S-oxide reductase activity
EggNOG OGsCOG0229@1,COG0702@1,KOG0856@2759,KOG1203@2759
EC1.8.4.12
Cds size915
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6391.17152.1prot_Ecto-sp13_S_contig6391.17152.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6391 1669..7667 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463884.5800912-UTR-Ecto-sp13_S_contig6391:669..16681681463884.5800912-UTR-Ecto-sp13_S_contig6391:669..1668Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6391 670..1668 -
1681463884.7218359-UTR-Ecto-sp13_S_contig6391:7667..77341681463884.7218359-UTR-Ecto-sp13_S_contig6391:7667..7734Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6391 7668..7734 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463884.5947387-CDS-Ecto-sp13_S_contig6391:1668..18151681463884.5947387-CDS-Ecto-sp13_S_contig6391:1668..1815Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6391 1669..1815 -
1681463884.6065495-CDS-Ecto-sp13_S_contig6391:2569..26391681463884.6065495-CDS-Ecto-sp13_S_contig6391:2569..2639Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6391 2570..2639 -
1681463884.618573-CDS-Ecto-sp13_S_contig6391:3114..32391681463884.618573-CDS-Ecto-sp13_S_contig6391:3114..3239Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6391 3115..3239 -
1681463884.6391468-CDS-Ecto-sp13_S_contig6391:3818..38751681463884.6391468-CDS-Ecto-sp13_S_contig6391:3818..3875Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6391 3819..3875 -
1681463884.6510167-CDS-Ecto-sp13_S_contig6391:4397..44751681463884.6510167-CDS-Ecto-sp13_S_contig6391:4397..4475Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6391 4398..4475 -
1681463884.662282-CDS-Ecto-sp13_S_contig6391:5456..55101681463884.662282-CDS-Ecto-sp13_S_contig6391:5456..5510Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6391 5457..5510 -
1681463884.6734889-CDS-Ecto-sp13_S_contig6391:6058..61611681463884.6734889-CDS-Ecto-sp13_S_contig6391:6058..6161Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6391 6059..6161 -
1681463884.686717-CDS-Ecto-sp13_S_contig6391:6421..65281681463884.686717-CDS-Ecto-sp13_S_contig6391:6421..6528Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6391 6422..6528 -
1681463884.6989694-CDS-Ecto-sp13_S_contig6391:6998..70941681463884.6989694-CDS-Ecto-sp13_S_contig6391:6998..7094Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6391 6999..7094 -
1681463884.7119994-CDS-Ecto-sp13_S_contig6391:7589..76671681463884.7119994-CDS-Ecto-sp13_S_contig6391:7589..7667Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6391 7590..7667 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6391.17152.1

>prot_Ecto-sp13_S_contig6391.17152.1 ID=prot_Ecto-sp13_S_contig6391.17152.1|Name=mRNA_Ecto-sp13_S_contig6391.17152.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=305bp
MEKSQSVVCALGASESEPFNVKGPYQVDGKLSQKLVLAAKETASVKHFVL
VTALGTGKFGWPASALNLFWGILSWKRKTEKALIDSGIPYTILRPGGMEK
PGDDFEQTHNVRVASKDTLFGGVVSRLQVAKLATAAVVAPDSSTNKVMEI
VAEDLAPKKTYTELVENARDDQPDETWKNKLSPDQYYVLRMGGTEPSFTS
PLNKEKREGVFVCAGCGQELYDSSTKYNSGTGWPSFFAPVSEEAVRVVRE
GGLFPRREVRCSNCDGHLGHVFPDGPKPTGLRYCMNGVAMGFKPEEDMAE
KEIA*
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mRNA from alignment at Ecto-sp13_S_contig6391:670..7734-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6391.17152.1 ID=mRNA_Ecto-sp13_S_contig6391.17152.1|Name=mRNA_Ecto-sp13_S_contig6391.17152.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7065bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6391:670..7734- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGCTGTCGAGCAAGCTTGAGGTGGTCGGGGTTGACCCAGAGAGCGAGT
TCGAGCTGAGCAAGGCCATGGAAAAGAGCCAGTCTGTCGTCTGTGCCCTG
GGGGCATCGGAATCGGAACCTTTCAACGTCAAGGGGCCTTACCAGGTGTT
GGCTCGTCGTGGCTCTCGTTGTTGCTGTTGTTGGTGGTTCCGCCGCTGTT
GTCACGGATGGTACTGTCCGTTGGGGTCACTGTTGTTGCTGCTGTCTTTG
TCTTTGTTTTTGTTTTTGCTGTTGTTGGTGTTGGTGTTGTTGTTGGTGTT
TTGCGTGCTGTCATTATGATTATCTTCGTCGTTACCGTTGCAACAGCAGT
GTAGGTTGTCGCCCATTCGCCCTCGACCCCCTCCCCTACTTCCATGAGGC
TGCCGGAAAATTCGGTGTGTTCTTGTACTTGCAACGTAGTTAGTCCCACT
CCCTCTCGTTTAAAAGTGTTCTTCTGCCCGCCCCACAGCAGGTTTTTTTT
ATTTTTTCTCGGCTGCCTTCGTTTACCTCATCACTGCTGTTATGCCGGTC
CGAAAACTGCACCAATTTTCCCCGGCGCGATTTCCTTTTCTCCCGTCATG
ACGACTGAAAAACGCTCCCCCCAACCCGCGTGAATGGAAGGTGGATGGGA
AGCTGTCCCAGAAGCTTGTGCTCGCGGCGAAGGAGACGGCCTCTGTGAAG
CACTTCGTCCTCGTTACGGCTCTCGGAACAGGGAAGGTCGGTCGCCTTTG
CACGACCCGACAGTACTTTCCCCTTTTTTTCTTCATCACGGTATACGTGG
AAGGATTCTGATGGCGGTATGCTACAACTCATTCCCTCCGACTATGTACA
TGAAATCTTGCCCGCTAGCCCTTGACGCCTGAGACACATTATGCTATTTC
TTTTTCTTGATGCCCACCAAAAATCGGTTGTGATTCTGCCGCACATGAAA
TCAGTTGTGTGTGCACGTAGCTTTTGTGGTTGTCGGTGCTTCATTCGGTT
GGATTCCACCTAGCCAAAGCGACCACAGCACATTTCGTACATCGATGTTT
TCTTTTCTTTTGTTCGTTTGCGCGACTTCGTGATGCTTACTTAAGGGTTT
CGGTTGGACGCAAGCCTTTCGCATATTCTTTCCTGTCCACTCGTGTTCCG
GTCTTGGTGATTTCTCTGTGTTGCCACACGATTCCTTCTTGCTTGGATCC
CAACAGTTCGGGTGGCCGGCGTCCGCGCTCAACCTGTTCTGGGGCATCTT
GTCGTGGAAGAGAAAGACGGAAAAGGCGCTCATCGACAGCGGGATACCCT
ACACTATTCTCAGGTGAGCGTACTGTGTACCCTCTACGCCATTCTCGGGC
GAATGCTCGACAATCTGCATTCAATCTAACGTATTATTGCTGTCTTCCTC
GTAGTCTTCATCGTCAGTAGTGGTGACAGATTGTTTCGTGGCAGCACTCG
CACGAGTGAACAGCCATCATCATACATTTTCGCGGCCTGGTGCTCTGGCC
GTCCTTTCAAAGATGCCTCCGCATTTCCTTTTTCCCTCTGTCATGTGTGT
CCGCTTGGATATGGTTTCGGCAGACCCGGCGGAATGGAGAAGCCCGGGGA
CGACTTCGAGCAGACCCACAATGTCAGGGTGGCCTCTAAGGACACCTTGT
TCGGAGGGGTCGTGTCCAGGCTGCAGGTAAACTAGTACACTAGTTCTACA
GTTTTCGCTTCAAGTTCACAAAGTGTCCTGTCAAACAAGGCTTGATGCCG
GAAAACCGCGTGAAGTATTGACGCCGAGCTACACCTACCCCGGGATACCC
GCTGCAAGCAGCGTGTTGTGATAGGGAGACGGTTTTCAGTCTTGTTTTGT
AGATATGGTTATGCCAATGCTGATTTTGGAAAAATATTAGTGCTTGTGTT
TTCCCGACCGACTGTTTTTGACTCAGCGCCTTAAACAAGAGGGCGTCGTG
TATTGGGCAGTTTGTAGATTCGGCGTGGTACTCCATGCTGTACTCCATTT
CAAGCCTCTCTCAAATGCCAGTTTTTCACAGCCAACATGCCGAGGATCGA
TTTGGCACGTGTCTACCAACCTCAGTTGATACAGTGGTAGCGCCACACGC
TTGGATCAATATCACACATGGCGGTGAACGTATGCAGATGCAGAGACAGA
TGACATACCCCCAAACGCTGTTCACCAACTGCTGCGTTGCTTTTGTGCGT
GTCGGTGCTTGTTCCCTGCTGCAGGTCGCCAAGCTAGCGACAGCGGCGGT
GGTGGCGCCGGATAGCAGCACTAACAAGGCAGGCCTGAGTTCTTTACTTC
TCTATTTTCGGAGCAGTTTGGTAACCAGCTGTGAGAGCGGATGAATTGAA
TTGAGCATCGCTCACGAAAGCAAGGGGTACAGCAGCACCGCTGAAAGGGG
CGGGCGGTCATGCTGGAGGTTTAGGGTACGAGGGACGTGCAACATGGGTG
CCGCGGTTTTCATGGAGTAGGGTTTGGTTACCTTGCAGTTTTACAGGGGT
CTGGGAAATGGGGGTTTGTGGTGGTGTAGAGCCCCAATCGTGCCGGTATG
AATGCCGGCGTGCTGTGTAGCCGATTCGGAAGAGAGTATGCCAACCCTAG
CACTACTTCCCGTTTCAAAAATAACACGCGGCTCCGATAGAACCGATCGA
AGAGATTTCCTTTGGTTCCTGTGCTTTGGCGGAATAAGCGAGTTCCCGCT
CGAAAGGGTCTGGCGCATCGGTTTCTCCAGGAGCGAGACTGCTGTCTGGA
GTTGTGCCTTTAAGCATGGCTGTTCCCATGCTCTTTGCGAGCCTGGCACG
AAGAGCACGCCGCGAGGGTTTTGCGACGGGTTGGATGAAAAGTTGAGATC
CGGGATCAATTTGGAGGGGATGAAGGCGACCCTGTCATTGCCATATACCA
CGGCAGTCTTGAGGTTTATCGTGGGAGACCAATCGCTACCACGCGACCTT
GGCCGGTGGTACGCGGAAGGTCCAACGTTTTGCGTATAGCGTGCAGCCTT
TCTCGGTGTATTATCTCTCATGTGCACTTTTGGACGTTGTTTTTTTTTGG
TATCATGATGTTCGCCGTTTCACAGTGCTTCTCGCTCCCAGTTCATTAAC
ATCGCCCTACGCCTCATGTCACGCTGGGGATGATAATTTCGTGTCTCTTA
TGTCCGTCCTTACATTCGTTCTTAACGAGTGCGTTTTCTTGTTGGACATT
TCGACCCCCGATAATGCTGACAACATTTGCCATGTCTCGGGACTGCATAA
CCTATGAAGGTGATGGAGATTGTGGCGGAGGATCTTGCCCCCAAGAAGAC
CTACACCGAACTGGTTGAAAACGCCAGGGACGACCAGGTGGGTTGAGCTA
AAACGGTTTTTCATTTCATTTTGGTACAGTTGTTTGTTGTTGTTGGTGGT
GTTGGTACTTTGTTGCTGCTGCAGCTATTACTGTTGCTCCTGCGGCTGCT
GCTGATTGTTTTTGTGGAAACGCACCAGAGTGTTCGCCCAAAAGCGAAGA
CCTTGCGCACGTGGAGGGCGTCTCCCCAAAACTCTTCCGCATTGCCGTTT
GAAAATTCACCAATAACAGGCAGTATCTTGTCTCCTACAAATCCTCTTGG
GCAGCAGCCCCCCGATGTATTTTCGTGGTCCGTGGAGGACAAGGACCATC
GGGTGTACACGGGTGTTCGTTTTCTTACTTTGTTGTCCAGGCCGTTACCA
CCCCCCGTCCCCGCCGCCGAAGTTGACAAATGAACCCTGTTCGTGATGTA
CCCTTTTGACTCGCCTCTACCTCCCCCACGTGGCGTGCATGTATCCTCCT
CTCTCATCCCCTCCCATGTTTTTGTTCCCCGTTCTTTCTGCGGTGCGATG
GATGCGCAGCCGGACGAGACTTGGAAGAACAAGCTTAGCCCCGACCAGTA
CTACGTTCTCAGGATGGTGAGTCGGCCGCCTCGATCCCTCCGGAACCTCT
TTATCGTAGAATTTATCTACAGTACACATATCCCCCAACGAGGAATATCG
CCTTTCGGGCATTTTCCGCCCTCGTTTCAGTTTCGTTGCTTACACCCGAA
GTCCGTTGTTGTGTTCCACGTTTGGCGAATTGGTATCCGTTTGCAAACTC
AGGCGAGCAACCCTTCGTGCAATTCGAAAACCCTCTTGGACCTGTGTGCA
GCTCCAACACGCAGCCTCAACCCTTTGCTGTGCGTTTCCTTTTTTTTTTT
TTCGTTGCTTTCATCGCCCGCCGGGACAAAACTTGCCACGTAAAGCACAA
CCTAAAAGCACCACTGAAGCACTTCCTCCACCTCTCCCACACACCCCTCT
TTGGCACATGTTAGTCGCACAAAGATGGGAGAAAAGGTGCATTCGTTTGG
CTGTGGAATGGCCGTGGAGTGCCTGCTTTTGGCCGCGGTCGTTTGCTCGC
TGGCTTGTTGTCCTACGTTGTTCCCCTCCCTCCATGTGTTTGCCCACCGC
CTCCCGTTGTTGTTTTTTCTGATTATCATTGACTGCAAATACTAGGGCGG
CACGGAACCGTCGTTCACATCCCCGCTGAACAAGGAGAAGAGGGAGGGAG
TCTTCGTTTGCGCAGGTTGCGGGCAGGAGCTGTACGATTCTAGCACCAAG
TACAACAGCGGCACCGGATGGTGAGAGATCTTTTTCCCGGCCATCTGTCT
ACGTTGATTACTTGCTCCGTTCCGGTGGTGCCGGAGGGTGCGACAGATGT
TGGTGCTAGTGGGCAGCAGGCGGCTGATTCGCTTTTGGGAGACAGCCAGG
AACTTTCTTGGAAAATTCTCAACATGGTATGGATCAATAGGTCAGGATTG
CGACATGAACACCACCCCTGTTTGCGGCAGGCAAAAAAGCAGCACTCGTG
AGCGCAACCACAAGAGAACACATACTATCACAGTGTTTGGAAATGAGTAG
GGCATCTACCCCACTCATTGGTTGTAACAGTTAACGCAAACTACCTTACA
CCGTGAGTTGTCATGATGTTTTTCCCAGGGCCGACGTACCCATGCTGCCA
GTAAGATGCATCGCATCTGTTGCCTAACTGACTGTCCTCGAGAACATGTG
ATTTACTCCTCCTTGCGCCAATGTGTTGCGTCTTTTTCGTCGAAGGCCTT
CGTTCTTCGCGCCCGTTTCGGAGGAAGCCGTTCGGGTCGTTCGAGAGGGA
GGTCTCTTCCCCAGGGTGAGAACAATAAAAGAACACTTTGACTAGACAAA
GTGCGTACCACTTTCTCTGGTACTGGAACAGTACACTCGCACGAAGAGGT
ACCTAAAACGAAAGGGGCCCCAATATTAAAGGGTGGACATCCGTTGTCAG
ACTCGGCCCGCTATAGTATTGTTGGGCACCCTCTTATTCCAGCATGAGAG
GGGGCTCCGATATGGGAAGGTCGAGGGCCTTTGTCACACCATCCTCTTGT
TACCGAGCCTCGACAGTGTCAGGTGTCACACGAGCTTGGGAGTTTGTTGA
CACCCTGAATGGTCCTTTGTTCTATTTGCCTGGTATGTTTCTGCTGCCCT
TATCGCTGTTCGATTATCTGCGCTGGAAGAAGTGAGGTGTTGATCGCATA
CGTACAGAAGAGCTCCTGGCAACTCGGACACGACTGCGAAAAAAAGCCCG
ATTAACGTAACATACCGTGTAGGCACTGTCAATCAGTCCCGCTTGCATTT
CCCCACTTTTTTCATCCGTCACCCTTGTCCTCGTGCTACGTGCATGGAGC
GTGCATGAAGAGAGATTGATTGCGCCGGTAGAATAATTCGCAGACTGTTG
ATACCCTCCATCTTGTTCGAGCTCCTCGAAACGGATGCTGTGGAGCTAGC
CAAGGCACGCAGCCGACTGCGCCATGTGAGACCGCCTGTATACCGACTGC
GGAACGGGATTAACATGACCCCCCCACAACCCAACCCTACTTGCGTTTTG
TTTTTTCGTCATCATGCAGAGAGAGGTGCGGTGTTCGAACTGCGACGGGC
ACTTGGGGCACGTGTTCCCAGACGGACCCAAGCCCACGGGGCTACGCTAC
TGTATGAATGGCGTTGCGATGGGGTTCAAGCCCGAGGAAGACATGGCCGA
AAAGGAAATCGCATAGACTATGGCAGTTTCTTGTGCTAGAAGCCGAGGCC
TGATGCTTTGACGGAAGGCGTTGTTGTACAGAGAAGATAAAACATGTGCT
GTAGCAATGAGCGAATCAATGGCGTCGCGTTCGCCTGTCGAAGACCTTCT
GCTTGTTTGTTGTCAGCAAGTTACCGTGGAAGGAGCGTTTCAGTTGTTTT
GTGTTGATCGAATACCGTGGGTTGTGGATTCCATGTTCGTGGTTTCTTTC
GTTGTTTGATGGGGGACTACCACAAACCCCTCGATCGTTGACCGAAAGCA
ATGATATTGGCGGGTTCAGGTCACACATACATTCATATGTATCACGCATC
ATGCATGCTCGTGTCGTATGCACTCTTTCTCGTGCTTGATACTACTGACT
ACTGTGCCATTCATACGAAAGGGGCGGGCACCAGCACTTGTTGTGTTGTT
TTTTTTTCGCTCTAATAGTCATGTCTCCGATTTTCTCTTCGGGGTTTGGC
CGATGGGGACTGACTACAACGTCATGCCAGGAATAGCGTTTGACTAAGCA
CCTGTTCTGTGTCGAGTTCTCAAAACATGGTTTGCCTTCTTCCTAGAGTA
TTTTGCTGTTCGTCGATACTGGAGAAAAGAAGTACCGAGCGCAGGGGAAT
GTTGAAATATTGTGAGTGATTCCGGATCGGAGGCTGGGGGCTAGGATCGA
GAGGATTATGTAACAGCAGTAAAATGTAAAATAACGACCCCGCGAACGGT
GAGTTGCCACCTGCCGGGAGGCCAATATGAGAAGATAAGAATGATGAAAC
CAATGAAACAGAAAGGAACTGGGAGTGCGTAACATCTCTACTTCGTAGAT
GGAGAGCCATTCCTATCCGGTAGGAGGAAGGGTGTTCAAATGAAGGGACT
CGTATGGCTTTTATGTTCATTTTTGCACCCTCAACGTGTGCTTCTCTTCT
TGACAGGCCATGGTACATCCACATGGTGCCGACAGCAGTGGCGCCGGCTG
TCGCCGGAGATACTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6391:670..7734-

>mRNA_Ecto-sp13_S_contig6391.17152.1 ID=mRNA_Ecto-sp13_S_contig6391.17152.1|Name=mRNA_Ecto-sp13_S_contig6391.17152.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=915bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6391:670..7734- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAAAGAGCCAGTCTGTCGTCTGTGCCCTGGGGGCATCGGAATCGGA
ACCTTTCAACGTCAAGGGGCCTTACCAGGTGGATGGGAAGCTGTCCCAGA
AGCTTGTGCTCGCGGCGAAGGAGACGGCCTCTGTGAAGCACTTCGTCCTC
GTTACGGCTCTCGGAACAGGGAAGTTCGGGTGGCCGGCGTCCGCGCTCAA
CCTGTTCTGGGGCATCTTGTCGTGGAAGAGAAAGACGGAAAAGGCGCTCA
TCGACAGCGGGATACCCTACACTATTCTCAGACCCGGCGGAATGGAGAAG
CCCGGGGACGACTTCGAGCAGACCCACAATGTCAGGGTGGCCTCTAAGGA
CACCTTGTTCGGAGGGGTCGTGTCCAGGCTGCAGGTCGCCAAGCTAGCGA
CAGCGGCGGTGGTGGCGCCGGATAGCAGCACTAACAAGGTGATGGAGATT
GTGGCGGAGGATCTTGCCCCCAAGAAGACCTACACCGAACTGGTTGAAAA
CGCCAGGGACGACCAGCCGGACGAGACTTGGAAGAACAAGCTTAGCCCCG
ACCAGTACTACGTTCTCAGGATGGGCGGCACGGAACCGTCGTTCACATCC
CCGCTGAACAAGGAGAAGAGGGAGGGAGTCTTCGTTTGCGCAGGTTGCGG
GCAGGAGCTGTACGATTCTAGCACCAAGTACAACAGCGGCACCGGATGGC
CTTCGTTCTTCGCGCCCGTTTCGGAGGAAGCCGTTCGGGTCGTTCGAGAG
GGAGGTCTCTTCCCCAGGAGAGAGGTGCGGTGTTCGAACTGCGACGGGCA
CTTGGGGCACGTGTTCCCAGACGGACCCAAGCCCACGGGGCTACGCTACT
GTATGAATGGCGTTGCGATGGGGTTCAAGCCCGAGGAAGACATGGCCGAA
AAGGAAATCGCATAG
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