mRNA_Ecto-sp13_S_contig120.1715.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig120.1715.1
Unique NamemRNA_Ecto-sp13_S_contig120.1715.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig120.1715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig120contigEcto-sp13_S_contig120:31974..32762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size789
Hectar predicted targeting categoryother localisation
Exons1
Cds size438
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462637.1884563-UTR-Ecto-sp13_S_contig120:31973..320971681462637.1884563-UTR-Ecto-sp13_S_contig120:31973..32097Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig120 31974..32097 +
1681462637.2060344-UTR-Ecto-sp13_S_contig120:32535..327621681462637.2060344-UTR-Ecto-sp13_S_contig120:32535..32762Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig120 32536..32762 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462637.1972878-CDS-Ecto-sp13_S_contig120:32097..325351681462637.1972878-CDS-Ecto-sp13_S_contig120:32097..32535Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig120 32098..32535 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig120.1715.1prot_Ecto-sp13_S_contig120.1715.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig120 32098..32535 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig120.1715.1

>prot_Ecto-sp13_S_contig120.1715.1 ID=prot_Ecto-sp13_S_contig120.1715.1|Name=mRNA_Ecto-sp13_S_contig120.1715.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=146bp
MDWSPLHPKGDERGVEGGECTQHMMSDTQWGAQHTQQARSKGCLARLLFL
RAWFVYRDTERECDIIYICWLHSPPTHPSTPACAYRGAPVINEKSTWQRG
YQKLSSTIPASPCSLRFRSFSFKSFQAPHPPSTEPNLRFIPTSST*
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mRNA from alignment at Ecto-sp13_S_contig120:31974..32762+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig120.1715.1 ID=mRNA_Ecto-sp13_S_contig120.1715.1|Name=mRNA_Ecto-sp13_S_contig120.1715.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=789bp|location=Sequence derived from alignment at Ecto-sp13_S_contig120:31974..32762+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGAGGAAGAGCGGTAAAGCAAACGTCGCAATCATTGGAGCAAGGAAACG
GGCCGGGTCCGGTCCAACAGGCTGAAGGGCGGAACCATGGAAGTCAATGG
CACGTGTGTGACGCCAGCAGGAATATGGATTGGTCCCCTCTACACCCAAA
AGGGGATGAGAGGGGGGTGGAGGGAGGCGAATGCACCCAACATATGATGT
CGGATACCCAGTGGGGGGCCCAACACACCCAACAAGCCCGAAGCAAAGGT
TGCCTTGCAAGATTACTTTTCCTTCGGGCTTGGTTTGTGTATCGGGATAC
AGAACGGGAGTGCGACATTATATACATATGTTGGTTGCACTCGCCTCCTA
CACACCCCTCTACCCCCGCCTGCGCATATAGAGGGGCACCGGTAATAAAC
GAAAAAAGTACATGGCAACGGGGGTATCAAAAGTTGTCTTCCACCATCCC
CGCAAGTCCTTGCTCGCTTAGGTTCCGTTCGTTCTCGTTCAAGTCCTTTC
AAGCCCCCCATCCCCCTTCGACTGAACCCAACCTTCGCTTCATACCTACA
TCTTCCACCTGAACTTCACTATCCCCTCGTTTTCCTCAAGTCTATGTGTG
TACCCGTTCGCTTCAGTTACATCTGCCATCTTTCGAGATGGCCATCATCA
TCGTCTCCTCAGTGCTTTCCAAAGCATACGTCCCTGTACAGCAGCAGCAG
GTCTAAGCTTACCCCTGGCGCGGTCCCTGTGGATGTCGAGGACGGCCATG
TCGACCGGCACCGTCGGATCCGGGGTCCCCGCGTTATCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig120:31974..32762+

>mRNA_Ecto-sp13_S_contig120.1715.1 ID=mRNA_Ecto-sp13_S_contig120.1715.1|Name=mRNA_Ecto-sp13_S_contig120.1715.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=438bp|location=Sequence derived from alignment at Ecto-sp13_S_contig120:31974..32762+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATTGGTCCCCTCTACACCCAAAAGGGGATGAGAGGGGGGTGGAGGG
AGGCGAATGCACCCAACATATGATGTCGGATACCCAGTGGGGGGCCCAAC
ACACCCAACAAGCCCGAAGCAAAGGTTGCCTTGCAAGATTACTTTTCCTT
CGGGCTTGGTTTGTGTATCGGGATACAGAACGGGAGTGCGACATTATATA
CATATGTTGGTTGCACTCGCCTCCTACACACCCCTCTACCCCCGCCTGCG
CATATAGAGGGGCACCGGTAATAAACGAAAAAAGTACATGGCAACGGGGG
TATCAAAAGTTGTCTTCCACCATCCCCGCAAGTCCTTGCTCGCTTAGGTT
CCGTTCGTTCTCGTTCAAGTCCTTTCAAGCCCCCCATCCCCCTTCGACTG
AACCCAACCTTCGCTTCATACCTACATCTTCCACCTGA
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