mRNA_Ecto-sp13_S_contig120.1714.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig120.1714.1
Unique NamemRNA_Ecto-sp13_S_contig120.1714.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig120.1714.1 vs. uniprot
Match: A0A6H5KY43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY43_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.790e-6
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = -2 
Query:    4 QVYSQEAFDRVTNTEGMRDLLERHFP 81
            +VYSQEAFDRVTNTEGMRDLLERHFP
Sbjct:  576 EVYSQEAFDRVTNTEGMRDLLERHFP 601
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig120.1714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KY43_9PHAE1.790e-696.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig120contigEcto-sp13_S_contig120:30281..30734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size454
Hectar predicted targeting categoryother localisation
Exons1
Cds size312
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462637.1244729-UTR-Ecto-sp13_S_contig120:30280..303111681462637.1244729-UTR-Ecto-sp13_S_contig120:30280..30311Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig120 30281..30311 +
1681462637.1470146-UTR-Ecto-sp13_S_contig120:30623..307341681462637.1470146-UTR-Ecto-sp13_S_contig120:30623..30734Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig120 30624..30734 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462637.1367197-CDS-Ecto-sp13_S_contig120:30311..306231681462637.1367197-CDS-Ecto-sp13_S_contig120:30311..30623Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig120 30312..30623 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig120.1714.1prot_Ecto-sp13_S_contig120.1714.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig120 30312..30623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig120.1714.1

>prot_Ecto-sp13_S_contig120.1714.1 ID=prot_Ecto-sp13_S_contig120.1714.1|Name=mRNA_Ecto-sp13_S_contig120.1714.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp
MPSVLVTRSNASWEYTCCSRGNNTEAREVGRGLLLLIVTRKKRHPSPTIR
QGVCCSSYDKCRHITRKRHQFVLIHRRQSFPCCRYIPLEDELTRQCCVCR
EWK*
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mRNA from alignment at Ecto-sp13_S_contig120:30281..30734+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig120.1714.1 ID=mRNA_Ecto-sp13_S_contig120.1714.1|Name=mRNA_Ecto-sp13_S_contig120.1714.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=454bp|location=Sequence derived from alignment at Ecto-sp13_S_contig120:30281..30734+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGGGGAAGTGGCGTTCAAGGAGGTCCCTCATGCCCTCCGTGTTGGTGA
CGCGGTCGAACGCTTCCTGGGAGTACACCTGTTGTTCAAGGGGCAACAAC
ACCGAAGCACGCGAGGTTGGTCGGGGTTTGTTGTTGCTAATCGTCACGAG
AAAAAAGCGGCATCCATCCCCCACGATACGCCAGGGTGTTTGTTGCTCGT
CATACGATAAATGTCGGCACATCACGCGAAAACGCCATCAGTTCGTCCTC
ATCCATCGTCGCCAGTCTTTTCCATGTTGCCGATACATCCCACTTGAGGA
CGAGCTGACACGACAATGCTGTGTTTGCCGTGAATGGAAGTGAGCGTTGC
GTCCACCGTCGGTGTAGACGCATGAAGAGGGGAACAACTCCACTGTTCAC
AACAGGACTGCATCCAGCAGGGGGCCTGAGGCAGAAATCTTCTGTGTGAC
CACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig120:30281..30734+

>mRNA_Ecto-sp13_S_contig120.1714.1 ID=mRNA_Ecto-sp13_S_contig120.1714.1|Name=mRNA_Ecto-sp13_S_contig120.1714.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig120:30281..30734+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCTCCGTGTTGGTGACGCGGTCGAACGCTTCCTGGGAGTACACCTG
TTGTTCAAGGGGCAACAACACCGAAGCACGCGAGGTTGGTCGGGGTTTGT
TGTTGCTAATCGTCACGAGAAAAAAGCGGCATCCATCCCCCACGATACGC
CAGGGTGTTTGTTGCTCGTCATACGATAAATGTCGGCACATCACGCGAAA
ACGCCATCAGTTCGTCCTCATCCATCGTCGCCAGTCTTTTCCATGTTGCC
GATACATCCCACTTGAGGACGAGCTGACACGACAATGCTGTGTTTGCCGT
GAATGGAAGTGA
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