mRNA_Ecto-sp13_S_contig6333.17077.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6333.17077.1
Unique NamemRNA_Ecto-sp13_S_contig6333.17077.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6333.17077.1 vs. uniprot
Match: A0A6H5K1S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S2_9PHAE)

HSP 1 Score: 522 bits (1345), Expect = 1.080e-169
Identity = 259/283 (91.52%), Postives = 265/283 (93.64%), Query Frame = 1 
Query:    4 GGGGGSFSPNEAWETLKNSLDFWEWIIARLMGFPRPQTSTVTAVDQFLGGLPVQCWAEVMEQAGLSHRTKEDVLAPTEFQRIVETILCHRNAAFCHHRDKAKRHAGHENFLGISLSLISSTPTPFLMVTDLPADVTHAEMITAFRPDARVPDRVMFEDIDIPVRGGVLAGSKAKNVMPQTAAILSFQSEETARLMRDMWDGGVLRPQHP----RRMAVRFSLGLNRSCIWIGAFSGKKLSAIELMDYATRTWPPETVMRPVFSEVPSSVESVHLTFPSCLSAR 840
            GGGGGSFSP EAWETLKNSLDFWEWIIARLMGFPRPQTSTVT+VDQFLGGLPVQCWAEVME+AGLSHRTKEDVL+PTEFQRIVETILCHRNAAFCHHRDKAKRHAGHENFLGISLSLISSTPTPFLMVTDLPADVTHAEMITAFRPDARVPDRVMFEDIDIPVRGGVLAGSKAKNVMPQTAAILSFQSEETARLMRDMWDGGVLRPQH       M      G   SCIWIGAFSGK+LSAIELMDYATRTWPP+T+MRPVFSE PSSVESVHLTFPSCLSAR
Sbjct:  522 GGGGGSFSPKEAWETLKNSLDFWEWIIARLMGFPRPQTSTVTSVDQFLGGLPVQCWAEVMERAGLSHRTKEDVLSPTEFQRIVETILCHRNAAFCHHRDKAKRHAGHENFLGISLSLISSTPTPFLMVTDLPADVTHAEMITAFRPDARVPDRVMFEDIDIPVRGGVLAGSKAKNVMPQTAAILSFQSEETARLMRDMWDGGVLRPQHVCVLGGMMLPAVGAGTFFSCIWIGAFSGKQLSAIELMDYATRTWPPDTLMRPVFSEAPSSVESVHLTFPSCLSAR 804
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6333.17077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K1S2_9PHAE1.080e-16991.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6333contigEcto-sp13_S_contig6333:305..4608 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size845
Hectar predicted targeting categoryother localisation
Exons5
Cds size843
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463877.987698-CDS-Ecto-sp13_S_contig6333:304..5201681463877.987698-CDS-Ecto-sp13_S_contig6333:304..520Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6333 305..520 -
1681463877.998381-CDS-Ecto-sp13_S_contig6333:1329..15191681463877.998381-CDS-Ecto-sp13_S_contig6333:1329..1519Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6333 1330..1519 -
1681463878.0084088-CDS-Ecto-sp13_S_contig6333:2424..26061681463878.0084088-CDS-Ecto-sp13_S_contig6333:2424..2606Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6333 2425..2606 -
1681463878.0189226-CDS-Ecto-sp13_S_contig6333:3307..34641681463878.0189226-CDS-Ecto-sp13_S_contig6333:3307..3464Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6333 3308..3464 -
1681463878.0288448-CDS-Ecto-sp13_S_contig6333:4510..46081681463878.0288448-CDS-Ecto-sp13_S_contig6333:4510..4608Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6333 4511..4608 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6333.17077.1prot_Ecto-sp13_S_contig6333.17077.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6333 305..4608 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6333.17077.1

>prot_Ecto-sp13_S_contig6333.17077.1 ID=prot_Ecto-sp13_S_contig6333.17077.1|Name=mRNA_Ecto-sp13_S_contig6333.17077.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=281bp
GGGGGGSFSPNEAWETLKNSLDFWEWIIARLMGFPRPQTSTVTAVDQFLG
GLPVQCWAEVMEQAGLSHRTKEDVLAPTEFQRIVETILCHRNAAFCHHRD
KAKRHAGHENFLGISLSLISSTPTPFLMVTDLPADVTHAEMITAFRPDAR
VPDRVMFEDIDIPVRGGVLAGSKAKNVMPQTAAILSFQSEETARLMRDMW
DGGVLRPQHPRRMAVRFSLGLNRSCIWIGAFSGKKLSAIELMDYATRTWP
PETVMRPVFSEVPSSVESVHLTFPSCLSAR*
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mRNA from alignment at Ecto-sp13_S_contig6333:305..4608-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6333.17077.1 ID=mRNA_Ecto-sp13_S_contig6333.17077.1|Name=mRNA_Ecto-sp13_S_contig6333.17077.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4304bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6333:305..4608- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGCGGCGGTGGTGGTTCTTTTTCTCCCAACGAGGCTTGGGAGACGTT
GAAGAATAGCCTCGACTTTTGGGAATGGATAATTGCGCGGCTGATGGGGT
GAGTGGGCAGGGCGAGAGCCGAAGCGGGCACGTGCATTTGGCAAGCGAGG
AGGGGATGGGGGGCGGGGGGCAGCAGCCCGATGCTTTAGGTCTAGCACCG
CCGCAGGATCCTCGCACATCACTCCTTGAGACATGTGCAGGAAATCCTAA
TCTCACGCCCGACCAGCAGCAGTAGGAACAATTTGTTCTTCCCGGTGGGG
TCTTTCCAAGAACCCAACAGTGCGGCCCGATACAACCACAGAACCCCTGT
ACGGAGATAACGAAATGCTCGGCGTTAGCCCCCCCCCGAGCAGTGCTCCT
GGAACGATCCGTTTTTTTTTTTTGCGTTAGCGATTGCCCTCGCGACCGCG
TGTTGTTGAGGTGGGGGGTGACCGTGCTCATGAATGAACAACAACCTCGC
AGTAAGTTGGAGGAAAGGTTTTGGCAACTTCCGGAGAAACAGCCGTGTCA
TGTGTTGTTGTTTTCCCCTCACCTGGACGTTTTCGTGCTTACAGTCGTGG
CTCCAATATTAAAAAGGTGGTGTAACAAAGGCCCTCGACCCTTTTGTATC
AGACCTCCCTCGTATACCGGAATAAGAGGGTACCCGACTTATGCTAAAGC
GGGTCCAGTCCGTGACAACCGAGTTGCGAGCCACTTGTTAAAGTTCTCCC
GCTTGGTTGTAAGGTACCCTCTACACATATGTCGGATCCACGATTTTCAC
GGTCACGCAGCATATGTCCCGATTTCCTTAGTCGTGATTCATGTCGACAT
CCCGTAGCTCGCCTTGGGCGTTCCATCCTTGTCCTTCCCCCCCCCCCCCC
CCCCCCCCGCTCCCCCTTAGGCGTTCCATCCTCCTCCTTTACCCCCCCCC
CACCCCCGCTCCCCCTTCGGCGTAACGATCCATCCCGGCAGCAATGTACG
GATGACGCGAGGTCAATGGTCTTACGACTACGGCATCATGCGTTTACATG
CGTACTCCCCCCCCCCCGTCCGCTGCTTCGCCCTCTCACTGTTTTGGGTA
CATTCATCGGCTTCTTGTACGGATCCCCCCCCCCTCCAACTCAGGTTCCC
GCGGCCACAAACCTCGACGGTGACCGCAGTAGACCAGTTTCTGGGCGGGC
TGCCTGTGCAGTGCTGGGCGGAGGTCATGGAGCAGGCGGGGCTATCACAC
CGTACCAAGGAGGACGTGCTTGCCCCTACGGAGTTCCAGCGCATCGTAGA
GGTGAGCTGTTTGTTGTGGTTTAACGTTGCTGGAGGCAAGTGATGTTGTT
GTGGCAGGTGATACTTGAAGGGTGGGAGTCTCTCTTCTTTTGCAGCAGCC
TTCGGAGGGTTTTTCTACTTTGTAAACAGCTGTTCCTCATGGTTTGTACT
TGTTTTCGAAATCGAATACCAAAAATGAAGAAAGATGATGTTTTGCAACG
AAGAGAAGGGTAAAGATGAAAATACTATACAGTACTTGGAAAGGCAACTT
CTACGTAGATTTGTTCGAGTTCAGTGTGTTCATCCCCCTTCTTCCTCTGG
TTGGTCGTCGTTGTCTTGGTTTTCACCTACAGCAGTACGCCTTTCTGCGT
TGTAGTAAAACCATGTAGTTTAATACTGACGTACTTCCTTTACTCTTTGT
TCTTTCTTGTTTGTTTTTTGGTACGTGGCTCCGCGCTTTGTCATCTCTGG
CTTGTCTGCTCATTGGTCTTTGTGATCGGGCTCTTGTCGTTTCCCACGAC
ATTGCGATTCCGCAAATTCGCGGTCAACACCGCAGGGCGCATAATCAAAA
TACCGGTCTTGTGCGTGCATCATGTCTCGTCTGCAGTACCATATTTATTG
ACACTCCTCCAAAGACCACAACAAGTACCGTCTGGACTAACCCCATTCCC
TCTTTACCGCTCGTGCGTGCGATGTCTCGGCCCCCCCCAACAACGCCGCC
AGACTATCCTTTGCCACCGCAACGCCGCGTTCTGCCACCACCGGGATAAG
GCCAAGCGTCACGCTGGCCACGAAAATTTCCTCGGCATCTCTCTGTCTCT
CATTTCGTCTACGCCGACCCCGTTCTTGATGGTGACCGATTTACCGGCGG
ATGTGACACACGCGGAGATGATTACGGCATTCAGGTGAAGACACTTTTTT
TTCTTTTGGAGCGATGTCACTTTTGTTGGCTGAAAACTCGGGTACGCTGT
ACCAACTTCTTGTGTCAAGTTTCTTATTTTGTTGTGCAGCAGCATCCTGA
TGAATTTCATAATTTGCATTTCTTAGAATTTGAAAGCCTCAAGGGAGGCG
GCGGAGAGCGCCATCATGTTTCGCGTTAGAAGTCGGCGGCAAAGCAGCAC
CGCTGGAAGGGGGTGGGGTAAGGGGCAGCTTCAGGTAGAGGAACCCTTCG
CGTCGGAGTAAACGGCAGGATTGTTGTGAGCGCTGATTTGATGTGAGACA
AAAAAAACATCAAGCGCGCATGCCTCTCCTACATGTACAAGTCCTTTCGC
ATTGTGGGTGGTCTGTTACTTCAAGTATTGTCCCTTTCGTGGTGTCTGGT
CTGTCTGATAGCGGCCAGCAATGGCTGGGTGTTGGAGGACGAGCTCTTGT
GTACCGTTGGTGTAGAAGAAAGAGACGCTATTGCTAAACACATTACGATA
GATGTCAAAAAGAGCCCCGTGTTGTGTTTTGTTCGGCACAACCTAAAGCA
CGTCGGCGGATAGTACCGTCACCGCGATGGTGGTTTAGCTTTCACTTACA
ATACACCACGAGAGAACCCGAGCGCACGCAAGGAAAGGCGACACCAACAT
GAGCAACCCACATCCCTGCTCTAACCTATCAATGTAGCGAGTGGTCCATT
CCCCCCCCCCGCCCTCGTGTTGATACCACCCTTGCCTTCGTGGAACACCC
TTCTTTCAGTACACGGAATTCTGCCCCCCCCCCCCCAACCCCCCAACAAA
TTCCTCTCGCAAGAACCCCCAATGGCTCTGTGCGTGCCACTGGTATCCGT
CGACTAACCCCGTGTCCTTGACGGTCCACCCGGTCTCAGGCCGGACGCCC
GTGTGCCGGACAGGGTGATGTTCGAGGACATCGACATCCCCGTCAGGGGC
GGAGTCCTCGCTGGCAGCAAAGCGAAGAACGTCATGCCGCAGACGGCGGC
CATCCTGTCTTTTCAGTCGGAGGAGACCGCTCGCCTGATGAGGGACATGT
GGGACGGAGGAGTGCTTCGTCCGCAACACGTGGGTTTGTTTGCCTTGGAT
TGCTTGCTCCGGGTTGCTTGAGCAACAGGTCGTTGTCGTCGTCACAGCGT
TCGTTTTATTTTTGTTTGTGCCGCTCTTTTTCCTCGGTAGTGTTGAATCC
TAGGCCTTTTGCGCGGTTGGTAGAGAAAGGATTTCAAGAGAACCAGGCGT
TTGGAGGGGTGATGATGTTGCCCGCGGTAGCAGGTAGGCCTCTCGCTCGT
TGGTAGAGCAGTACCTTTTTCTGATGATACTGTGGCAACGTCGTTTATTT
GTGCCGGGTGTAACGGTTGCCGTCTGTGTGGACCCCTCGAGCTTCACTGC
ACCGCCGCTGCTGGCGCTTTAGGTTTTTAGAAACAAGAATACAGCACAAA
TACTGAAAAAAAGGTTAACCGTTCGAGATAATCTCCCACGGGGGATGTCT
GCGTTGAAGCCTCTGACAACAATATGTGGCGAAACAGACTGTTTTTTTCA
CGTATGCTGCCATCGTGTTCACGGGGCAACCCGGTCAGGGTGGCAAAACC
CAGGCGGTGGCAAGAGCCGCGTTTCTTTCTTGAGCACCGTACTCGAGTTA
TTTTCCGTGCCAATCCACCCACGGTGTCGTCTACTCTAGCACGTAGAGTA
CCTCCGAGCAACAGACGCCCGCGATCCAGATCAAACGCAGTGTTGTTTCT
CGCCTCTCTCTCTTTTAAATGCTGTTTTTTTGCGATTGTTGTGGTCAAAA
CCAAAAGAGATTCAGAGGGAACCCCCCCCCCCCCCCCGCCTGGGTGCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCAAACTCAGCCGCGGCGTATG
GCGGTAAGGTTTAGCCTCGGGCTCAATCGCAGCTGCATCTGGATCGGCGC
GTTCAGCGGTAAGAAGCTGAGCGCCATCGAGCTGATGGATTACGCCACTC
GGACATGGCCCCCCGAAACGGTTATGCGGCCGGTTTTTTCGGAGGTGCCA
TCCAGCGTGGAGTCAGTGCACCTGACCTTCCCGTCTTGCCTGTCCGCAAG
GTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6333:305..4608-

>mRNA_Ecto-sp13_S_contig6333.17077.1 ID=mRNA_Ecto-sp13_S_contig6333.17077.1|Name=mRNA_Ecto-sp13_S_contig6333.17077.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=843bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6333:305..4608- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGCGGCGGTGGTGGTTCTTTTTCTCCCAACGAGGCTTGGGAGACGTT
GAAGAATAGCCTCGACTTTTGGGAATGGATAATTGCGCGGCTGATGGGGT
TCCCGCGGCCACAAACCTCGACGGTGACCGCAGTAGACCAGTTTCTGGGC
GGGCTGCCTGTGCAGTGCTGGGCGGAGGTCATGGAGCAGGCGGGGCTATC
ACACCGTACCAAGGAGGACGTGCTTGCCCCTACGGAGTTCCAGCGCATCG
TAGAGACTATCCTTTGCCACCGCAACGCCGCGTTCTGCCACCACCGGGAT
AAGGCCAAGCGTCACGCTGGCCACGAAAATTTCCTCGGCATCTCTCTGTC
TCTCATTTCGTCTACGCCGACCCCGTTCTTGATGGTGACCGATTTACCGG
CGGATGTGACACACGCGGAGATGATTACGGCATTCAGGCCGGACGCCCGT
GTGCCGGACAGGGTGATGTTCGAGGACATCGACATCCCCGTCAGGGGCGG
AGTCCTCGCTGGCAGCAAAGCGAAGAACGTCATGCCGCAGACGGCGGCCA
TCCTGTCTTTTCAGTCGGAGGAGACCGCTCGCCTGATGAGGGACATGTGG
GACGGAGGAGTGCTTCGTCCGCAACACCCGCGGCGTATGGCGGTAAGGTT
TAGCCTCGGGCTCAATCGCAGCTGCATCTGGATCGGCGCGTTCAGCGGTA
AGAAGCTGAGCGCCATCGAGCTGATGGATTACGCCACTCGGACATGGCCC
CCCGAAACGGTTATGCGGCCGGTTTTTTCGGAGGTGCCATCCAGCGTGGA
GTCAGTGCACCTGACCTTCCCGTCTTGCCTGTCCGCAAGGTGA
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