mRNA_Ecto-sp13_S_contig632.17063.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig632.17063.1
Unique NamemRNA_Ecto-sp13_S_contig632.17063.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig632.17063.1 vs. uniprot
Match: D7FIJ0_ECTSI (Dynactin 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIJ0_ECTSI)

HSP 1 Score: 368 bits (944), Expect = 4.250e-125
Identity = 178/185 (96.22%), Postives = 180/185 (97.30%), Query Frame = 3
Query:   84 MAGSAPQEYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGELQEIRIGRYSVVGEGTVIRPAYRIEQEESNLKCRFTPLSVGSHTYIGKSCVIESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVSALHESTPSVWTEDAVNFYETFEPSAVETSK 638
            MAGSA +EYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGELQEIRIGRY VVGEGTVIRPAYRIEQEESNLKCRFTPLSVGSHTYIGKSCV+ESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVS LHESTPSVWTEDAVNFYETFEPSAV T K
Sbjct:    1 MAGSAQEEYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGELQEIRIGRYCVVGEGTVIRPAYRIEQEESNLKCRFTPLSVGSHTYIGKSCVVESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVSVLHESTPSVWTEDAVNFYETFEPSAVVTPK 185          
BLAST of mRNA_Ecto-sp13_S_contig632.17063.1 vs. uniprot
Match: A0A7S2V2Q0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2Q0_9STRA)

HSP 1 Score: 148 bits (373), Expect = 2.630e-39
Identity = 73/174 (41.95%), Postives = 113/174 (64.94%), Query Frame = 3
Query:  102 QEYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGELQEIRIGRYSVVGEGTVIRPAYRIEQEESNLKCRFTPLSVGSHTYIGKSCVIESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVSALHESTPSVWTEDAVNFYETFEPSA 623
            +E+++T   ++V KK  +   + + + G++I+M GVIIRG+L ++ +GRY  VG  T+IRPA +I +E +     F  + +G +T IG+ C+IE+A IG NV+     VLG+ S VRD C L  GTVL  GAVVPPF+V+ GCP R+ S L E++P  ++  A + Y+ F+ +A
Sbjct:   10 EEFIRTTTNNLVSKKVRISSPNFVKITGKTILMHGVIIRGDLAKVEMGRYCEVGANTIIRPALKISEEPT-----FADVKIGDNTRIGEDCIIEAAWIGTNVQXXXXXVLGKGSLVRDCCRLEDGTVLAPGAVVPPFSVVAGCPGRVTSELPENSPEEFSHAAQDSYKKFKETA 178          
BLAST of mRNA_Ecto-sp13_S_contig632.17063.1 vs. uniprot
Match: A0A7S3QBQ9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QBQ9_9STRA)

HSP 1 Score: 145 bits (365), Expect = 2.070e-37
Identity = 75/205 (36.59%), Postives = 116/205 (56.59%), Query Frame = 3
Query:   63 DLGRIMAMAGSAPQEYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGELQEIRIGRYSVVGEGTVIRP-AYRI-------------EQEESNLKCRFTPLSVGSHTYIGKSCVIESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVS--ALHESTPSVWTEDAVNFYETFEPSAVE 629
            D  R++       + YVKT   + V +KA +HG  N+ + G+SI+ P V IRG+ Q +RIGRY  +GEG+++RP +Y+              E EE     +F PL VGSHT IGK CVIE+A +G +V I D CV+ +   ++D C++  GTV+ +  V+PPF+ + GCP  M+    + ES  +   +D V  +  F  + ++
Sbjct:   32 DPSRLVVEVAPEEEGYVKTAAYNYVSRKAFIHGAKNVEMKGKSIVHPKVHIRGDFQTVRIGRYCHIGEGSILRPPSYQASLDTSHEGASENGENEEEKQLIKFLPLIVGSHTQIGKGCVIEAAAVGSSVYIGDNCVISKRVIIKDCCYIASGTVIAQDTVIPPFSRVAGCPGGMIENGLMAESITTTSVDDCVEQFNEFVKTMIQ 236          
BLAST of mRNA_Ecto-sp13_S_contig632.17063.1 vs. uniprot
Match: A0A0L0DIQ2_THETB (Dynactin subunit 5 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DIQ2_THETB)

HSP 1 Score: 140 bits (353), Expect = 2.530e-36
Identity = 67/174 (38.51%), Postives = 110/174 (63.22%), Query Frame = 3
Query:   99 PQEYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGELQEIRIGRYSVVGEGTVIRPAYRIEQEESNLKCRFTPLSVGSHTYIGKSCVIESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVSALHESTPSVWTEDAVNFYETFEPS 620
            P+E+++T  G+ V + + + G  N+ L G+S+++PG IIRG+L  +RIGRY V+ +  V+RPAY+   +  N    +  LS+G   Y+GK  V+E+A IG +V I +G ++ + + + D C +LPG V+PE AV+PPF++  G PA ++  L E+   V  E A   YE++ P+
Sbjct:    8 PEEWIETASGNKVSRASVLCGSQNIILNGKSLVLPGSIIRGDLAAVRIGRYCVISDRVVLRPAYKALPKGLN----YFQLSLGDCVYVGKDAVVEAASIGSHVIIGEGAIVSKRAVILDCCEILPGAVVPEDAVIPPFSIYGGNPAVLIGELTEAAQRVHEEKAFACYESYVPA 177          
BLAST of mRNA_Ecto-sp13_S_contig632.17063.1 vs. uniprot
Match: A0A3S1H5M8_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S1H5M8_ELYCH)

HSP 1 Score: 131 bits (329), Expect = 8.240e-33
Identity = 61/171 (35.67%), Postives = 102/171 (59.65%), Query Frame = 3
Query:  105 EYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGELQEIRIGRYSVVGEGTVIRPAYRIEQEESNLKCRFTPLSVGSHTYIGKSCVIESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVSALHESTPSVWTEDAVNFYETFEP 617
            +Y++T  G+ V +++ + G  N+ + G++I+M G +IRG+L  +RIGR+ ++    VIRPA++      +    F PL +G H  I ++ V+ +A +G  V I   CV+GR + ++D C +   T+LP  AVVPPFT+  G P ++ S L + T  + T+  VN+Y  F P
Sbjct:   12 QYIETASGNKVSRQSVLCGSQNIVINGKTIVMTGCVIRGDLANVRIGRHCIISNNAVIRPAFK----RFSKGVAFFPLHIGDHVLIEENSVVNAAQVGSFVHIGKNCVIGRRAVLKDCCAIADNTILPPEAVVPPFTLCSGSPGKLTSELPDCTQDLMTDITVNYYHHFRP 178          
BLAST of mRNA_Ecto-sp13_S_contig632.17063.1 vs. uniprot
Match: A0A0K0JQM9_BRUMA (BMA-DNC-5 n=14 Tax=Spiruromorpha TaxID=2072716 RepID=A0A0K0JQM9_BRUMA)

HSP 1 Score: 130 bits (326), Expect = 2.250e-32
Identity = 64/177 (36.16%), Postives = 101/177 (57.06%), Query Frame = 3
Query:  105 EYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGELQEIRIGRYSVVGEGTVIRPAYRIEQEESNLKCRFTPLSVGSHTYIGKSCVIESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVSALHESTPSVWTEDAVNFYETFEPSAVETS 635
            EYV+T  G+ V +K+ + G  N+ L G+S +M   I+RG++  IR GRY VVGE T+IRP+Y+      +    F P+ +G H +IG  C++ +A IG  V          +  ++    +LP TV+P  AV+PPF+++ G P  ++  L EST  + T+   NFY+ F P +  +S
Sbjct:    8 EYVETATGNKVNRKSRLFGSQNIVLNGKSTLMKDCILRGDMHNIRTGRYCVVGERTIIRPSYK----RFSKGLTFFPVHIGDHVFIGNDCIVMAAEIGAFVHXXXXXXXXXSVIIKSCVQVLPNTVVPHDAVIPPFSIVGGNPGTVIGHLPESTQELMTQATRNFYDNFVPDSKNSS 180          
BLAST of mRNA_Ecto-sp13_S_contig632.17063.1 vs. uniprot
Match: A0A0N4UWP5_ENTVE (Uncharacterized protein n=1 Tax=Enterobius vermicularis TaxID=51028 RepID=A0A0N4UWP5_ENTVE)

HSP 1 Score: 126 bits (317), Expect = 4.670e-31
Identity = 63/171 (36.84%), Postives = 105/171 (61.40%), Query Frame = 3
Query:  111 VKTRDGDIVFKKA-HVHGLHNLFLMGRSIIMPGVIIRGELQEIRIGRYSVVGEGTVIRPAYRIEQEESNLKCRFTPLSVGSHTYIGKSCVIESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVSALHESTPSVWTEDAVNFYETFEPS 620
            V+T  G+ V ++  H+ G  N+ L G+SIIM G I+RG+L  +RIG+Y V+GE ++IRP+++   +       + P+ +G + +I   CV+ +A IG  V I    ++GR++ ++D   +LP  V+P+ AV+PPF+++ G PA +V  L  ST  +  +   +FYE F PS
Sbjct:   14 VETATGNKVSRRGTHLFGSTNIVLSGKSIIMDGCILRGDLNSVRIGKYCVIGERSIIRPSFKAFSKGLT----YFPVHIGDYVFIENDCVVMAAQIGSFVHIGSNAIIGRSTVLKDCVQILPDAVIPQDAVIPPFSIVGGNPAVIVGELPPSTQDLMMQANKSFYENFVPS 180          
BLAST of mRNA_Ecto-sp13_S_contig632.17063.1 vs. uniprot
Match: L8GIW5_ACACA (Dynactin 4 isoform 2, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GIW5_ACACA)

HSP 1 Score: 125 bits (315), Expect = 1.580e-30
Identity = 63/171 (36.84%), Postives = 101/171 (59.06%), Query Frame = 3
Query:  105 EYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGELQEIRIGRYSVVGEGTVIRPAYRIEQEESNLKCRFTPLSVGSHTYIGKSCVIESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVSALHESTPSVWTEDAVNFYETFEP 617
            E+++T  G+ V +K+ + G  N+ L G++++MPG +IRG+L  + +G+YSV+G   VIRPA++  Q        F P+++G   +I + C++ +  IG  V +  G VLGR+S ++D C +  G+VL  G VVPPFT+  G PA     L E    +  E ++  Y TF P
Sbjct:   16 EFIETHTGNKVGRKSILCGSQNIRLHGKTVVMPGAMIRGDLGAVNVGKYSVIGRNVVIRPAHKRYQGS----VAFFPVTIGDFVHIEEDCIVSATSIGSYVHVGRGAVLGRHSVLKDCCWVEEGSVLAPGTVVPPFTIFGGSPAVQKGQLPECFQEMQKEASLINYNTFLP 182          
BLAST of mRNA_Ecto-sp13_S_contig632.17063.1 vs. uniprot
Match: A0A6P3X098_DINQU (dynactin subunit 5 n=9 Tax=Aculeata TaxID=7434 RepID=A0A6P3X098_DINQU)

HSP 1 Score: 124 bits (312), Expect = 2.270e-30
Identity = 63/174 (36.21%), Postives = 99/174 (56.90%), Query Frame = 3
Query:  105 EYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGELQEIRIGRYSVVGEGTVIRPAYRIEQEESNLKCRFTPLSVGSHTYIGKSCVIESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVSALHESTPSVWTEDAVNFYETFEPSAV 626
            EYV+T  G+ V +   + G  N+ L G+ I+    IIRG+L  +R GRY ++ +  VIRP ++    + +    F PLS+G+H ++G+  V+ +A +GC V I    ++GR S ++D C++  G V+P   +VP FT   G PA  V  L E T  + T+   N+YE F P+ V
Sbjct:   12 EYVETASGNKVSRLTVLCGSQNIVLHGKVIVQSDAIIRGDLANVRTGRYCIISKNAVIRPPFK----KFSRGVAFFPLSMGNHVFVGERAVVNAALVGCYVYIGRNAIIGRRSVLKDCCYIEDGAVVPPETIVPSFTRFAGSPATCVEELPECTVDLMTDFTKNYYEHFLPARV 181          
BLAST of mRNA_Ecto-sp13_S_contig632.17063.1 vs. uniprot
Match: A0A0D6ELH2_SPOSA (SPOSA6832_02372-mRNA-1:cds n=1 Tax=Sporidiobolus salmonicolor TaxID=5005 RepID=A0A0D6ELH2_SPOSA)

HSP 1 Score: 123 bits (309), Expect = 8.830e-30
Identity = 67/193 (34.72%), Postives = 103/193 (53.37%), Query Frame = 3
Query:   81 AMAGSAPQEYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGELQE--------------IRIGRYSVVGEGTVIRPAYRIEQEESNLKCRFTPLSVGSHTYIGKSCVIESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVSALHESTPSVWTEDAVNFYETFEP 617
            A + S+   Y+ T  G+IV + + + G  N+ L G+SI+ PG IIRG+L+               + +G+Y VVGEGTV+RP Y+  +   +    + P+ +G +  IG   V+E+A IG  V I  GC++G  + ++D   +  G V+  G +VP  T   G PAR  + L ESTP +    A  FY  F+P
Sbjct:    5 APSASSKSSYIHTDTGNIVSRASTITGSQNIVLGGKSILQPGCIIRGDLRRSGATSAGXXXXXVVVAMGKYCVVGEGTVLRPCYKTYKGVFS----YYPMKIGDYVSIGPGSVVEAASIGTGVEIGKGCIVGPLAILKDYSRIADGAVVGAGTIVPSLTEWSGSPARPTAQLPESTPELVEAKAKAFYSRFQP 193          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig632.17063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIJ0_ECTSI4.250e-12596.22Dynactin 4 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A7S2V2Q0_9STRA2.630e-3941.95Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3QBQ9_9STRA2.070e-3736.59Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A0L0DIQ2_THETB2.530e-3638.51Dynactin subunit 5 n=1 Tax=Thecamonas trahens ATCC... [more]
A0A3S1H5M8_ELYCH8.240e-3335.67Uncharacterized protein n=1 Tax=Elysia chlorotica ... [more]
A0A0K0JQM9_BRUMA2.250e-3236.16BMA-DNC-5 n=14 Tax=Spiruromorpha TaxID=2072716 Rep... [more]
A0A0N4UWP5_ENTVE4.670e-3136.84Uncharacterized protein n=1 Tax=Enterobius vermicu... [more]
L8GIW5_ACACA1.580e-3036.84Dynactin 4 isoform 2, putative n=1 Tax=Acanthamoeb... [more]
A0A6P3X098_DINQU2.270e-3036.21dynactin subunit 5 n=9 Tax=Aculeata TaxID=7434 Rep... [more]
A0A0D6ELH2_SPOSA8.830e-3034.72SPOSA6832_02372-mRNA-1:cds n=1 Tax=Sporidiobolus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig632contigEcto-sp13_S_contig632:15267..18694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score368.2
Seed ortholog evalue2.2e-99
Seed eggNOG ortholog2880.D7FIJ0
Preferred nameDCTN5
Model size1226
KEGG koko:K10427
KEGG Pathwayko04962,map04962
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001568,GO:0001944,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003205,GO:0003231,GO:0003279,GO:0003281,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005869,GO:0005875,GO:0005886,GO:0006810,GO:0006888,GO:0006928,GO:0007017,GO:0007018,GO:0007275,GO:0007276,GO:0007283,GO:0007507,GO:0008088,GO:0008090,GO:0008150,GO:0009987,GO:0010970,GO:0012505,GO:0015629,GO:0015630,GO:0016020,GO:0016192,GO:0019882,GO:0019884,GO:0019886,GO:0019953,GO:0022414,GO:0030705,GO:0031090,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0035904,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046907,GO:0048002,GO:0048193,GO:0048232,GO:0048513,GO:0048609,GO:0048731,GO:0048856,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0060840,GO:0060976,GO:0070013,GO:0071944,GO:0072358,GO:0072359,GO:0098930,GO:0099111
Exons5
EggNOG free text desc.aorta development
EggNOG OGsKOG3121@1,KOG3121@2759
Ec32 ortholog descriptionTrimeric LpxA-like
Ec32 orthologEc-28_000450.1
Cds size564
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig632.17063.1prot_Ecto-sp13_S_contig632.17063.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig632 15344..18109 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463876.5015895-UTR-Ecto-sp13_S_contig632:15266..153431681463876.5015895-UTR-Ecto-sp13_S_contig632:15266..15343Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig632 15267..15343 +
1681463876.5720954-UTR-Ecto-sp13_S_contig632:18109..186941681463876.5720954-UTR-Ecto-sp13_S_contig632:18109..18694Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig632 18110..18694 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463876.5188441-CDS-Ecto-sp13_S_contig632:15343..154541681463876.5188441-CDS-Ecto-sp13_S_contig632:15343..15454Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig632 15344..15454 +
1681463876.5291853-CDS-Ecto-sp13_S_contig632:16402..165061681463876.5291853-CDS-Ecto-sp13_S_contig632:16402..16506Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig632 16403..16506 +
1681463876.5394602-CDS-Ecto-sp13_S_contig632:16999..171381681463876.5394602-CDS-Ecto-sp13_S_contig632:16999..17138Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig632 17000..17138 +
1681463876.5509284-CDS-Ecto-sp13_S_contig632:17668..177551681463876.5509284-CDS-Ecto-sp13_S_contig632:17668..17755Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig632 17669..17755 +
1681463876.5620546-CDS-Ecto-sp13_S_contig632:17986..181091681463876.5620546-CDS-Ecto-sp13_S_contig632:17986..18109Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig632 17987..18109 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig632.17063.1

>prot_Ecto-sp13_S_contig632.17063.1 ID=prot_Ecto-sp13_S_contig632.17063.1|Name=mRNA_Ecto-sp13_S_contig632.17063.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=188bp
MAMAGSAPQEYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGEL
QEIRIGRYSVVGEGTVIRPAYRIEQEESNLKCRFTPLSVGSHTYIGKSCV
IESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQG
CPARMVSALHESTPSVWTEDAVNFYETFEPSAVETSK*
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mRNA from alignment at Ecto-sp13_S_contig632:15267..18694+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig632.17063.1 ID=mRNA_Ecto-sp13_S_contig632.17063.1|Name=mRNA_Ecto-sp13_S_contig632.17063.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3428bp|location=Sequence derived from alignment at Ecto-sp13_S_contig632:15267..18694+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCACCTCCTGTATTGGGTGTGTGTGCGTGCGTACGCACATGTATCAGAG CCGTGCGTTGGTGATCTAGGGAGGATAATGGCCATGGCAGGATCTGCGCC ACAAGAGTACGTGAAGACCCGCGATGGCGACATTGTCTTCAAGAAAGCTC ACGTCCACGGCTTGCACAATCTGTTTCTCATGGGAAGGGTAAGACATCAA CTTGATTCGATGCGACGTTTGCATGTACACACCCCGTCCCCACATGGGCG TTCGTCATGCATATACCATGAGCTGCAAATGACAGCCTACTGTAGATGTT GGTGTACCACCCTCCACTGCTACCAAATTTACCAGCTGTTTGGGCCCGCA ATGTTGCCCATCAACAGGCTGGATCTCGATCAGTAGTCTAGCCATCGGAC CATCGTACACTTATGTACGTGTTTCAGGGTCATCATGAGACCTACGTGTA TCATGAGACCGAAGCGGTGGGGATACATAACGTGTCCACGCCACCGGTGG GGCATCAAGCCGTATTCACCCTCACCACCACCGCGAAGAAACACGAACAA CGAAGGAAATGAAGCCGTCTAATGTGTCTTTACGTACGTCACGGCGGAAG CGATCATCGTACAGCACAGCGGTGGAAGCGAGGGAAAGGAGCGTAGGGAG GGGGCAACCCACAAAGGTCAAACCTCCCTCCGCCCCAAACCCGTGAAACA TATACTGGTACGTCTTGTTGCACATGGTTTGCGTGCACCACCTTGTAGCA GCGTACCCCATCGCACCCGCGCGCTCGCTCATTTGAGACAAAGCTGGAGT ATGTGTGTACCAGAACGACTTTTGTGCAGCATGGATCTGATGTGGTGTTG CGGAGGCGTGTTTCCAAGCTGTAGCAGCTGATAAGTGCAGCTTGACCATC TGTGTGTGGCACATTGCAGTCACTCTGTCGTGTTTATCTATCTAACCTAC ACTGCACTATTTCGAATTGCTTGCTCTTGGTACTACACAAACATGCGCGC GACGACATCGCGGTTGAGTGCGTTGGTCGCTCAAACACCCACGAAGGCTG CCGCGCATAGCCCCCCGTTTAATCGCGGATGATTTCGTTCCCGATCCTAT TTTGTCTGCGTTGACGAAATTTCATCTGCTCATCAGAGCATCATCATGCC GGGGGTAATCATCCGCGGAGAACTACAGGAGATCCGAATAGGTCGGTACT CCGTCGTTGGCGAAGGCACCGTCATCCGACCAGCTTACAGGTAAGCAGGA ATACGTGTACCCTGGCTCGTTACTAAGAAGGGCTTTTCGATGGAGGAGCT CTTCCAACAGCGTGGCGACTTGATCAAATACGTTCGGTTTTCACGGCACA ATGCGCCGCCAGCAGGTCAGGTACTGCCCGTGAGGGTAGCTTGATCTACT TGCTGTCTAGGGTGGGCCCTGCAAAGTCCTCTGATCAGCACGATGCGCTT GCCAGTTCATTATCCTGAATCATTTACAATGGGTTGCTGGATTATCTTCC AGCAGCACGAGCTGGGTTGGGAGGGCCGCATGCCTTACTGGTCGTGTAGG GTGTTGGCGCTTGCTTGCTTACACCAACGGCGCATTCCGAGCTACGTGAC CCCTTGCACGTTTGCGTCGTTTGTTTACTGTTGGCCCCCGGTGCGTGTTC CTCCCTTCGGTCGAGAACCCGCTCACAACTTCGTGTTCCGAAAACTGTCA ACCAAAAAACGTGTTGGTTCTTCTTGCCGACAGGATTGAACAAGAGGAGT CTAACCTGAAGTGTCGCTTCACCCCGCTATCTGTGGGTAGCCACACCTAC ATCGGCAAGTCCTGCGTCATAGAATCGGCTGGCATTGGGTGCAACGTGCG GATCGAGGATGGATGCGTTTTGGTGAGGGTAGAAACTTGGTGTAGCCTCT TTTCCTTTATAGGAGGTGCAACCCTACTGTTGAGTCCAAAGCTTGGATCA TGATGCTTGCTGCAATGCCATTTTTGATGGATAGAAGGCCACGACACTTT TGCTGACCAGAGTCAGAAACGGCATGAATCTGGCCGGTTTTTGCGCAACA CGTGCCTGCTGAAAAGGTTTCTGGGCATTATGTGGTGCTGGCCGTGTGTC TGGTCAGGCGGTGCTATGTTTATGGCAGGTCGAGGTGGTGTTATGCACGA TTTCTTAGCTTGATGCTCACGATTCTCTGATGCCCCCAACGCTCGAGGAC TTTCATGAAAACTCGGTCCGAGATATTTGGTATCCCTGTTCGCCCATTCT CGGACTTTGCGACAGCAGACAGGTGGCAATTCTTTTCTTGGCTACGGCAC ACAGCAGCGCTGCAGTACGGGTGCATGACCGAGGCGGTGCTTTCCTAACA TCATGTGGCCGCGCCGCTCTGCCTTTGCCCGTGCCGTTTTGGTTCCCGGT AGGGACGGAATAGTTTTGTTCGGGACAATTGCCATCTGTTGCCGGGGACG GTTCTTCCTGAAGGAGCCGTGGTCCCCCCTTTTACTGTGGTGAGAGAAGT TGCAACATTCCCCGGCTATCTTCATCTTGTGGACGTGATCCCGTGTCCCA TACTTCGACCACGGTCCCACACATCCCGTGCTTTCCTTCACGCCTTACCT TCCATGGCACGCCCCCACACGCGAATTGGGCGTTCTTGCTGTTCAGGCTC AAAACGTTCCTCCTCGTTGCCTATCTCCCCCTCTCGCCCTGTGTGCGTCG GTCGACCCCACTTGTCCCAGCTCCAGGGCTGCCCGGCGAGGATGGTGTCA GCGCTACATGAGAGCACACCATCGGTGTGGACGGAGGACGCCGTGAACTT CTACGAAACTTTCGAGCCGAGCGCTGTTGAAACATCCAAATGACCCTTCC TTGTAGCCGCGTATCTCCCCCAAGCGTTTTTGAAGACGCACCCACAACTC TAATTCCAGCTCTTTCTCGTGGCTATGTATGTGTGTGACGTTGTTGCAGC GCGAGCTCTGTCGCTGTTCTTTGATCTGCAGCCTCCTGCCGATGTCTGTT CGCGCACACGTCGAACATTTGTTTATGTTCGCCGGAACATCACAATCTCT GCCTAGAAAAATCCCCGGTCTGTTCAGTGTCAACCGCAACTTTTGTGGCC ATGGATTTTGTTTGACGAGAAGCGAATTCACTTGGTGTGTAGATCGTTCT TCTGGTGAACTCCTGCCCAATGCCATCTCACGTTTTTGTATATTCCCGTA GAGAGTGATTCTAACTCGGCTGTCGGTAGTTTAGCTGTAGCTGTACTGGT GATCACCGAACCTAAAATATCAGACCCCTGCTGCGCCTGAAGATGGCTCT AAAATTGCTGCCGCCGTTGCTGCACACATGCCACTGCACTACGAAGGAGA ATGGACTAGGCCCACAGACCGCCAGCTTCCTCTACTAAGCAGTCCCCCCA TCATGTTTTTTGGTCGGTGAGCCTCTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig632:15267..18694+

>mRNA_Ecto-sp13_S_contig632.17063.1 ID=mRNA_Ecto-sp13_S_contig632.17063.1|Name=mRNA_Ecto-sp13_S_contig632.17063.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=564bp|location=Sequence derived from alignment at Ecto-sp13_S_contig632:15267..18694+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCATGGCAGGATCTGCGCCACAAGAGTACGTGAAGACCCGCGATGG
CGACATTGTCTTCAAGAAAGCTCACGTCCACGGCTTGCACAATCTGTTTC
TCATGGGAAGGAGCATCATCATGCCGGGGGTAATCATCCGCGGAGAACTA
CAGGAGATCCGAATAGGTCGGTACTCCGTCGTTGGCGAAGGCACCGTCAT
CCGACCAGCTTACAGGATTGAACAAGAGGAGTCTAACCTGAAGTGTCGCT
TCACCCCGCTATCTGTGGGTAGCCACACCTACATCGGCAAGTCCTGCGTC
ATAGAATCGGCTGGCATTGGGTGCAACGTGCGGATCGAGGATGGATGCGT
TTTGGGACGGAATAGTTTTGTTCGGGACAATTGCCATCTGTTGCCGGGGA
CGGTTCTTCCTGAAGGAGCCGTGGTCCCCCCTTTTACTGTGCTCCAGGGC
TGCCCGGCGAGGATGGTGTCAGCGCTACATGAGAGCACACCATCGGTGTG
GACGGAGGACGCCGTGAACTTCTACGAAACTTTCGAGCCGAGCGCTGTTG
AAACATCCAAATGA
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