mRNA_Ecto-sp13_S_contig632.17060.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig632.17060.1
Unique NamemRNA_Ecto-sp13_S_contig632.17060.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig632.17060.1 vs. uniprot
Match: D7G829_ECTSI (AMP deaminase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G829_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 1.120e-60
Identity = 99/102 (97.06%), Postives = 100/102 (98.04%), Query Frame = 1 
Query:    1 VSNRLFVAEDGIDEEEAAGALGPAEIKGAFFDTVNVHVRQPEDYKRVLVYGGEDEFVDEDMRTSCGQLQTALNLRDKWSTLGPARPCEGARCMPPPPSASSP 306
            VSNRLF AEDG DEEEAAGALGPAEIKGAFFDTVNVHVRQPEDYKRVLVYGGEDEFVDEDMRTSCGQL+TALNLRDKWSTLGPARPCEGARCMPPPPSASSP
Sbjct:   29 VSNRLFAAEDGSDEEEAAGALGPAEIKGAFFDTVNVHVRQPEDYKRVLVYGGEDEFVDEDMRTSCGQLKTALNLRDKWSTLGPARPCEGARCMPPPPSASSP 130
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig632.17060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G829_ECTSI1.120e-6097.06AMP deaminase n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig632contigEcto-sp13_S_contig632:1645..2880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score206.8
Seed ortholog evalue4.7e-51
Seed eggNOG ortholog2880.D7G829
Preferred nameAMPD2
Model size311
KEGG rclassRC00477
KEGG koko:K01490
KEGG ReactionR00181
KEGG Pathwayko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.adenosine-phosphate deaminase activity
EggNOG OGsCOG1816@1,KOG1096@2759
EC3.5.4.6
Cds size309
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463876.2265143-CDS-Ecto-sp13_S_contig632:1644..17701681463876.2265143-CDS-Ecto-sp13_S_contig632:1644..1770Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig632 1645..1770 +
1681463876.240518-CDS-Ecto-sp13_S_contig632:2357..24381681463876.240518-CDS-Ecto-sp13_S_contig632:2357..2438Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig632 2358..2438 +
1681463876.2512872-CDS-Ecto-sp13_S_contig632:2776..28781681463876.2512872-CDS-Ecto-sp13_S_contig632:2776..2878Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig632 2777..2878 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig632.17060.1prot_Ecto-sp13_S_contig632.17060.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig632 1645..2878 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig632.17060.1

>prot_Ecto-sp13_S_contig632.17060.1 ID=prot_Ecto-sp13_S_contig632.17060.1|Name=mRNA_Ecto-sp13_S_contig632.17060.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
VSNRLFVAEDGIDEEEAAGALGPAEIKGAFFDTVNVHVRQPEDYKRVLVY
GGEDEFVDEDMRTSCGQLQTALNLRDKWSTLGPARPCEGARCMPPPPSAS
SPG
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mRNA from alignment at Ecto-sp13_S_contig632:1645..2880+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig632.17060.1 ID=mRNA_Ecto-sp13_S_contig632.17060.1|Name=mRNA_Ecto-sp13_S_contig632.17060.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1236bp|location=Sequence derived from alignment at Ecto-sp13_S_contig632:1645..2880+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGAGTAATCGGTTGTTTGTTGCCGAAGACGGGATCGATGAAGAAGAAGC
GGCGGGAGCCCTTGGACCTGCGGAAATCAAAGGTGCTTTCTTTGACACCG
TCAACGTCCACGTCCGACAACCGGAGGTAAAGCGAGCATCCTCATTGAGA
CCTGCTGTCTGCTTTATCGTCTGAGCAAATGTTTTCCTGCGGACACGCAG
TTAGTGCAGTTGGGTGTCAGCAAGTGGTATCTGGCATGACTTTCGAAGCA
ATGGACATGCTTCGTTGAATGCGCGAACGCCTGCCACCGTTTCCCACCAA
ACATAGCGCATACCGCTGCAGTCTGGGTTGTAGAACCGCCATACGCTGCC
CTGTCCTTTCTCTCAAGGGCGGCAAGTGTCACTTCTGGTGTGGCGAAAGC
CGCTCATTCTGCAGCAAAACTCCGAACAATTTCTGCCCGCAAACCTCCCT
GTAGAATGATTGACACAAAGTGTGCTATATTTGGCGCAATATGATGGCGT
TCAACATTTGTGTTTTTCAGCCGCTTGCATCTGTGGGTACCGGGGGGAGG
GGACGTACACGGTCATCTCACGCGGGTTAGGTATCTTGCAGCGGAGGTCG
ATGGCACACGAAAGGAGCGTGCCACCTCGTGGGTAGAGGATTAGGTGATC
TGTGGATGGCCTCGCTGTCGTGTGTCATTTAGGCTGATGTGCTTCCCGTC
GGTCCCTCACCAGGATTACAAGCGAGTTCTTGTCTATGGCGGCGAGGACG
AATTCGTTGATGAAGACATGAGGACGTCATGCGGCCAGCTCCAGGTAGTT
CTTACTTTTCTTTCGGAGTGATTGCGCTCGCTGCACAATACACGACGTCG
GCTGTCACGTGTCGGGATGCGCTCCACACGTTGTTGCGTTCATTACTGCA
CGAATCGCTCCCATTTTGTGTGGCGTGCTTGTATGGGGCCTACCTGATCT
CCTGTGCGATGGAACCGTAGCCAGACGCCCCGTTGTGTGCTTTCCAAAGC
CAGTGATACAAAGTTGCCATTAGGCATTTGGCGGTGTTGCCATAATCAAT
ACTCCGTAGTACTCAAGAATGGTCTGGAGGGATGATCAACGAGTACGATG
ACCACAACCCGTCGTGCTTGTCTTTGCCCCAGACTGCTCTGAACCTACGC
GACAAGTGGTCCACGCTTGGACCTGCCCGGCCTTGTGAAGGGGCGCGCTG
TATGCCACCCCCTCCTTCAGCCTCGTCGCCAGGCGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig632:1645..2880+

>mRNA_Ecto-sp13_S_contig632.17060.1 ID=mRNA_Ecto-sp13_S_contig632.17060.1|Name=mRNA_Ecto-sp13_S_contig632.17060.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig632:1645..2880+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGAGTAATCGGTTGTTTGTTGCCGAAGACGGGATCGATGAAGAAGAAGC
GGCGGGAGCCCTTGGACCTGCGGAAATCAAAGGTGCTTTCTTTGACACCG
TCAACGTCCACGTCCGACAACCGGAGGATTACAAGCGAGTTCTTGTCTAT
GGCGGCGAGGACGAATTCGTTGATGAAGACATGAGGACGTCATGCGGCCA
GCTCCAGACTGCTCTGAACCTACGCGACAAGTGGTCCACGCTTGGACCTG
CCCGGCCTTGTGAAGGGGCGCGCTGTATGCCACCCCCTCCTTCAGCCTCG
TCGCCAGGC
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