mRNA_Ecto-sp13_S_contig6314.17057.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6314.17057.1 vs. uniprot
Match: D8LH66_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI) HSP 1 Score: 270 bits (689), Expect = 3.370e-89 Identity = 144/165 (87.27%), Postives = 151/165 (91.52%), Query Frame = 1
Query: 1 MPSTLSKASGSADPTIATTDVDRRCGDANQTPLMMASVIGSSRVVRDLLRQGASVSVADSDGYTALHLAVYHKHLAVSKDLIEAGADLEARPGGVYDTPLHVAATKRFCQGMVVLMDSRLDDGATPLFVAASDGRLEAVKILLRANANPLLSAYVSLPLYMAVYN 495
MPSTLSKASGS DPTIATT +DR CGD NQTPLM+ASVIGSSRVVRDLLRQGASVSVADSDG TALH +VYH HLAVSKDLIEAGADLEAR GG DTPLHVAATK FCQGM +LMDSRLDDGATPLF+AASDGRLEAV++LLRANANPLLSA SLPLYMAVYN
Sbjct: 1 MPSTLSKASGSIDPTIATTGIDRGCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVYHNHLAVSKDLIEAGADLEARHGGK-DTPLHVAATKGFCQGMKLLMDSRLDDGATPLFLAASDGRLEAVRVLLRANANPLLSACGSLPLYMAVYN 164
BLAST of mRNA_Ecto-sp13_S_contig6314.17057.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE) HSP 1 Score: 247 bits (631), Expect = 5.530e-77 Identity = 139/217 (64.06%), Postives = 149/217 (68.66%), Query Frame = 1
Query: 1 MPSTLSKASGSADPTIATTDVDRRCGDANQTPLMMASVIGSSRVVRDLLRQGASVSVADSDGYTALHLAVYHKHLAVSKDLIEAGADLEARPGGVYDTPLHVAATKRFCQGMVVLMDSRLDDGATPLFVAASDGRLEAVKIL-----LRANANPLLSAYVSLPLYMAVYN*HLEVVRELVHWYGTDRCSSDGGALALATAASRKHVDIVTFLCDAGV 636
MPSTLSKASGS + +ATTD+DRRCGD N TPLM+ASVIGSSRVV+DLLRQGASVSVADSDGYTALH +VYH+HLAVS LIEAGADLEARPG LRANANPLLSAY SLPL AVYN HL+VV ELVHWYGTDRC++DGG LALATAASRKHVDIVTFLCDAGV
Sbjct: 1 MPSTLSKASGSVERAVATTDIDRRCGDTNHTPLMVASVIGSSRVVKDLLRQGASVSVADSDGYTALHHSVYHRHLAVSISLIEAGADLEARPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRANANPLLSAYGSLPLGTAVYNGHLKVVSELVHWYGTDRCTNDGGVLALATAASRKHVDIVTFLCDAGV 217
BLAST of mRNA_Ecto-sp13_S_contig6314.17057.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE) HSP 1 Score: 231 bits (588), Expect = 2.100e-67 Identity = 135/217 (62.21%), Postives = 140/217 (64.52%), Query Frame = 1
Query: 1 MPSTLSKASGSADPTIATTDVDRRCGDANQTPLMMASVIGSSRVVRDLLRQGASVSVADSDGYTALHLAVYHKHLAVSKDLIEAGADLEARPGGVYDTPLHVAATKRFCQGMVVLMDSRLDDGATPLFVAASDGRLEAVKILLR-----ANANPLLSAYVSLPLYMAVYN*HLEVVRELVHWYGTDRCSSDGGALALATAASRKHVDIVTFLCDAGV 636
MPSTLSKASGSADPTIATTD+DRRCG NQTPLM+ASVIGSSRVVRDLLRQGASVSVADSDGYTALH AVYHKHLAVSK ANANPLLSAY SLPL MAVY+ HLEVVRELVHWYGTDRC+SDGGALALATAASRKHVDIV FLC+AGV
Sbjct: 422 MPSTLSKASGSADPTIATTDIDRRCGGTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANANPLLSAYGSLPLGMAVYHGHLEVVRELVHWYGTDRCTSDGGALALATAASRKHVDIVAFLCNAGV 638
BLAST of mRNA_Ecto-sp13_S_contig6314.17057.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE) HSP 1 Score: 225 bits (574), Expect = 1.460e-65 Identity = 130/210 (61.90%), Postives = 138/210 (65.71%), Query Frame = 1
Query: 25 SGSADPTIATTDVDRRCGDANQTPLMMASVIGSSRVVRDLLRQGASVSVADSDGYTALHLAVYHKHLAVSKDLIEAGADLEARPGGVYDTPLHVAATKRFCQGMVVLMDSRLDDGATPLFVAASDGRLEAVKILLRANA------NPLLSAYVSLPLYMAVYN*HLEVVRELVHWYGTDRCSSDGGALALATAASRKHVDIVTFLCDAGV 636
SGS + IATTD+DRRCGD NQTPLM+ASVIGSSRVVRDLLRQGASVS+ADSDGY ALH AVYHKHLAVSKDLIEAGADL+ARPGG+ DTPLHVAATK FCQ M NPLLSA ELV+WYGTD C+SDGGALALATAASR VDIVTFLCDAGV
Sbjct: 399 SGSVERPIATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGGI-DTPLHVAATKGFCQEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSADXXXXXXXXXXXXXXXXXXELVYWYGTDGCTSDGGALALATAASRNQVDIVTFLCDAGV 607
BLAST of mRNA_Ecto-sp13_S_contig6314.17057.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE) HSP 1 Score: 190 bits (483), Expect = 1.110e-54 Identity = 120/218 (55.05%), Postives = 124/218 (56.88%), Query Frame = 1
Query: 1 MPSTLSKASGSADPTIATTDVDRRCGDANQTPLMMASVIGSSRVVRDLLRQGASVSVADSDGYTALHLAVYHKHLAVSKDLIEAGADLEARPGGVYDTPLHVAATKRFCQGMVVLMDSRLDDGATPLFVAASDGRLEAVKILLRANANPL-----LSAYVSLPLY-MAVYN*HLEVVRELVHWYGTDRCSSDGGALALATAASRKHVDIVTFLCDAGV 636
MPSTLSKASGSADPTIATTD+DRRCGD NQTPLM+ASVIG SRVVRDLLRQGASVSVADSDGYTALH AVYHKHLAVSK LSAY SLPLY M RELV+WYG DRC+SDGGALAL TAASRKHVDIVTFL DAGV
Sbjct: 7 MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASVIGPSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSAYGSLPLYIMXXXXXXXXXXRELVYWYGIDRCTSDGGALALVTAASRKHVDIVTFLRDAGV 224
BLAST of mRNA_Ecto-sp13_S_contig6314.17057.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE) HSP 1 Score: 169 bits (429), Expect = 2.860e-47 Identity = 100/208 (48.08%), Postives = 134/208 (64.42%), Query Frame = 1
Query: 55 TDVDRRCGDANQTPLMMASVIGSSRVVRDLLRQGASVSVADSDGYTALHLAVYHKHLAVSKDLIEAGADLEARPGGVY--------DTPLHVAATKRFCQGMVVLM------DSRLDDGATPLFVAASDGRLEAVKILLRANANPLLSAYVSLPLYMAVYN*HLEVVRELVHWYGTDRCSSDGGALALATAASRKHVDIVTFLCDAGV 636
T++DRRC + T LM A+ G R+VR LLR GA VSV+ DG+TALH A+ ++LAV+K LI+AGA++EA+ V TPLH+AA + FC+GMV L+ DSR+ DG+T +++AA G LEAV+IL + ANPLL + PL +A + HL VV+ELV +G D C+ +G AL TAA H I+TFL DAGV
Sbjct: 42 TEIDRRCDEHGVTALMCAANKGYLRIVRVLLRFGADVSVSTDDGHTALHFAIGGRNLAVTKALIKAGAEVEAKADLVRMESEVVQGQTPLHLAAGEGFCEGMVALINAGANVDSRMSDGSTAMYIAACLGNLEAVEILFQKKANPLLRVGPTHPLDIATHGGHLGVVQELVQRFGIDGCADEGAIGALETAAYENHEAIMTFLLDAGV 249
BLAST of mRNA_Ecto-sp13_S_contig6314.17057.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE) HSP 1 Score: 149 bits (377), Expect = 8.720e-40 Identity = 98/185 (52.97%), Postives = 116/185 (62.70%), Query Frame = 1
Query: 103 MASVIGSSRVVRDLLRQGASVSVADSDGYTALHLAVYHKHLAVSKDLIEAGADLEARPG-----GVYDTPLHVAATKRFCQGMVVLMDSRLDDGATPLFVAASDGRLEAVKILLRANANPLLSAY--VSLPLYMAVYN*HLEVVRELVHWYGTDRCSSDGGALALATAASRKHVDIVTFLCDAGV 636
+AS +G RVVR LLR GA VS AD+DG TALHL++ +KHLAVSK L++AGADLEAR GV TPLHVAA K F +GMV+L+ + VK + A ANP+L+AY SLPL +A N L VVREL +G D CS DGGA AL AAS+ VDIVTFL D GV
Sbjct: 37 VASTMGYLRVVRVLLRLGARVSAADNDGATALHLSIVNKHLAVSKALVKAGADLEARIDHHQALGVGCTPLHVAAAKGFHKGMVMLIHA-------------------GVKGFVGAKANPILAAYDGESLPLDVAAENGQLGVVRELEQRFGIDGCSCDGGAQALVEAASQNQVDIVTFLFDNGV 202
BLAST of mRNA_Ecto-sp13_S_contig6314.17057.1 vs. uniprot
Match: D7FXY7_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY7_ECTSI) HSP 1 Score: 95.9 bits (237), Expect = 5.300e-20 Identity = 63/145 (43.45%), Postives = 83/145 (57.24%), Query Frame = 1
Query: 241 LIEAGADLEARPGGVYDTPLHVAATKRFCQGMVVLMD------SRLDDGATPLFVAASDGRLEAVKILLRANANPLLSAYV------SLPLYMAVYN*HLEVVRELVHWYGTDRCS-SDGGALALATAASRKHVDIVTFLCDAGV 636
L+EAGA LE TPL +AA M L++ SR DGATPLF+AA +G ++AV++LL A +PLL+ ++ SLPL +A HLEVV EL+ G C S GG AL AA KH+D++T L +AGV
Sbjct: 2 LVEAGAPLEVATKQQLCTPLQIAAVNGCAASMTTLLEAGANLNSRRFDGATPLFLAAWEGNVDAVRLLLLAKVDPLLTPHLGTSERASLPLDVAAGLGHLEVVNELIRQVGIGGCGGSSGGVRALQQAARNKHLDMLTVLTNAGV 146
BLAST of mRNA_Ecto-sp13_S_contig6314.17057.1 vs. uniprot
Match: A0A3Q0T3R3_AMPCI (Palmitoyltransferase n=1 Tax=Amphilophus citrinellus TaxID=61819 RepID=A0A3Q0T3R3_AMPCI) HSP 1 Score: 70.1 bits (170), Expect = 1.900e-10 Identity = 52/136 (38.24%), Postives = 71/136 (52.21%), Query Frame = 1
Query: 61 VDRRCGDANQTPLMMASVIGSSRVVRDLLRQGASVSVADSDGYTALHLAVYHKHLAVSKDLIEAGADLEARPGGVYDTPLHVAATKRFC-QGMVVLMDSRLDDGA-------TPLFVAASDGRLEAVKILLRANAN 444
VD+ GD N TPL A G +V L+R GA SVAD +GY ALHLA+ +H+A++ LI G +++ P TPL +AA K + L+ + GA TPL A G ++A ILL A A+
Sbjct: 132 VDQLGGDLNSTPLHWAIRQGHLPMVIQLMRYGADPSVADGEGYRALHLAILFQHMAIAAYLIAKGQEVDG-PDCNGQTPLMLAAQKIIGPEPTNFLIKNNASVGAVDKVNRNTPLHCAVLAGNVDAAHILLEAGAS 266
BLAST of mRNA_Ecto-sp13_S_contig6314.17057.1 vs. uniprot
Match: A0A3B4B0F2_9GOBI (Palmitoyltransferase n=2 Tax=Oxudercinae TaxID=497678 RepID=A0A3B4B0F2_9GOBI) HSP 1 Score: 69.3 bits (168), Expect = 3.410e-10 Identity = 51/138 (36.96%), Postives = 72/138 (52.17%), Query Frame = 1
Query: 61 VDRRCGDANQTPLMMASVIGSSRVVRDLLRQGASVSVADSDGYTALHLAVYHKHLAVSKDLIEAGADLEARPGGVYDTPLHVAATK-------RFC---QGMVVLMDSRLDDGATPLFVAASDGRLEAVKILLRANAN 444
VD+ GD N TPL A G ++V L+R GA S+AD +GY ALHLA+ +H+A++ L+ G +++ P TPL +AA K F V +DS + TPL A G ++A ILL A A+
Sbjct: 95 VDQLGGDLNSTPLHWAIRQGHLQMVIQLMRYGADPSIADGEGYRALHLAILFQHMAIAAYLMAKGQEVDT-PDCNGQTPLMLAAQKIIGPEPTHFLVRHDASVTAVDSSSRN--TPLHCAVLAGNVDAAHILLEAGAS 229 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6314.17057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6314.17057.1 >prot_Ecto-sp13_S_contig6314.17057.1 ID=prot_Ecto-sp13_S_contig6314.17057.1|Name=mRNA_Ecto-sp13_S_contig6314.17057.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=166bp MPSTLSKASGSADPTIATTDVDRRCGDANQTPLMMASVIGSSRVVRDLLRback to top mRNA from alignment at Ecto-sp13_S_contig6314:4221..4858- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6314.17057.1 ID=mRNA_Ecto-sp13_S_contig6314.17057.1|Name=mRNA_Ecto-sp13_S_contig6314.17057.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=638bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6314:4221..4858- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6314:4221..4858- >mRNA_Ecto-sp13_S_contig6314.17057.1 ID=mRNA_Ecto-sp13_S_contig6314.17057.1|Name=mRNA_Ecto-sp13_S_contig6314.17057.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=498bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6314:4221..4858- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |