mRNA_Ecto-sp13_S_contig10144.171.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10144.171.1
Unique NamemRNA_Ecto-sp13_S_contig10144.171.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10144.171.1 vs. uniprot
Match: A0A3L6V663_9STRA (Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A3L6V663_9STRA)

HSP 1 Score: 206 bits (523), Expect = 1.940e-66
Identity = 106/113 (93.81%), Postives = 108/113 (95.58%), Query Frame = 1 
Query:   52 LLHKNTPYTNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 390
             +  N P +NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   13 FVSSNKPTSNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125
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BLAST of mRNA_Ecto-sp13_S_contig10144.171.1 vs. uniprot
Match: A0A7S0ICQ7_MICPS (Histone H4 n=3 Tax=Viridiplantae TaxID=33090 RepID=A0A7S0ICQ7_MICPS)

HSP 1 Score: 202 bits (515), Expect = 2.250e-65
Identity = 105/111 (94.59%), Postives = 107/111 (96.40%), Query Frame = 1 
Query:   58 HKNTPYTNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 390
            HK+T   NMSGRGKGGK LGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    4 HKHTNSNNMSGRGKGGKXLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 114
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BLAST of mRNA_Ecto-sp13_S_contig10144.171.1 vs. uniprot
Match: A0A446IM63_TRITD (Histone H4 n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446IM63_TRITD)

HSP 1 Score: 204 bits (518), Expect = 3.090e-65
Identity = 115/137 (83.94%), Postives = 117/137 (85.40%), Query Frame = 1 
Query:    4 LASPSPPPA-HNNNYLPLL--HKNTPYTN-----MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 390
            L  PSPPPA H  N  PLL  H     T      MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   20 LKIPSPPPANHKTNSPPLLDLHPLAARTKERASAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 156
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BLAST of mRNA_Ecto-sp13_S_contig10144.171.1 vs. uniprot
Match: A0A453N2X0_AEGTS (Histone H4 n=2 Tax=Mesangiospermae TaxID=1437183 RepID=A0A453N2X0_AEGTS)

HSP 1 Score: 201 bits (510), Expect = 1.440e-64
Identity = 106/115 (92.17%), Postives = 108/115 (93.91%), Query Frame = 1 
Query:   52 LLHKNTPYTN--MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 390
            LLH  TP     MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    3 LLHFQTPSAPPIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 117
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10144.171.1 vs. uniprot
Match: A0A7S4DKQ9_9EUKA (Histone H4 n=4 Tax=Chlorarachniophyceae TaxID=29197 RepID=A0A7S4DKQ9_9EUKA)

HSP 1 Score: 200 bits (509), Expect = 1.910e-64
Identity = 105/114 (92.11%), Postives = 107/114 (93.86%), Query Frame = 1 
Query:   49 PLLHKNTPYTNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 390
            P  HK T    MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLE+VIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    2 PNDHKPTRTATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLESVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 115
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BLAST of mRNA_Ecto-sp13_S_contig10144.171.1 vs. uniprot
Match: A0A5D2MDG6_GOSTO (Histone H4 (Fragment) n=1 Tax=Gossypium tomentosum TaxID=34277 RepID=A0A5D2MDG6_GOSTO)

HSP 1 Score: 201 bits (512), Expect = 2.020e-64
Identity = 103/112 (91.96%), Postives = 108/112 (96.43%), Query Frame = 1 
Query:   55 LHKNTPYTNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 390
            L K+  ++ MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   38 LEKSFDFSKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 149
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BLAST of mRNA_Ecto-sp13_S_contig10144.171.1 vs. uniprot
Match: A0A8B8CHU8_CRAVI (Histone H4 n=4 Tax=Bilateria TaxID=33213 RepID=A0A8B8CHU8_CRAVI)

HSP 1 Score: 204 bits (518), Expect = 2.080e-64
Identity = 106/116 (91.38%), Postives = 110/116 (94.83%), Query Frame = 1 
Query:   43 YLPLLHKNTPYTNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 390
            YL  L ++T   NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:  100 YLVGLFEDTNLANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 215
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BLAST of mRNA_Ecto-sp13_S_contig10144.171.1 vs. uniprot
Match: A0A7S3CDM2_9CHLO (Histone H4 n=4 Tax=Eukaryota TaxID=2759 RepID=A0A7S3CDM2_9CHLO)

HSP 1 Score: 201 bits (510), Expect = 2.340e-64
Identity = 106/113 (93.81%), Postives = 109/113 (96.46%), Query Frame = 1 
Query:   52 LLHKNTPYTNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 390
            L ++ TP T MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   21 LPNEETPAT-MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 132
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10144.171.1 vs. uniprot
Match: W5QFR6_SHEEP (Histone H4 n=4 Tax=Laurasiatheria TaxID=314145 RepID=W5QFR6_SHEEP)

HSP 1 Score: 199 bits (507), Expect = 3.080e-64
Identity = 103/108 (95.37%), Postives = 105/108 (97.22%), Query Frame = 1 
Query:   67 TPYTNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 390
            T Y  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 TSYKAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 108
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10144.171.1 vs. uniprot
Match: A0A4D9CLB0_9STRA (Histone H4 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CLB0_9STRA)

HSP 1 Score: 200 bits (508), Expect = 3.090e-64
Identity = 105/113 (92.92%), Postives = 106/113 (93.81%), Query Frame = 1 
Query:   52 LLHKNTPYTNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 390
            LL      T MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTA+DVVYALKRQGRTLYGFGG
Sbjct:    7 LLPSRDNLTAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 119
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10144.171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3L6V663_9STRA1.940e-6693.81Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID... [more]
A0A7S0ICQ7_MICPS2.250e-6594.59Histone H4 n=3 Tax=Viridiplantae TaxID=33090 RepID... [more]
A0A446IM63_TRITD3.090e-6583.94Histone H4 n=1 Tax=Triticum turgidum subsp. durum ... [more]
A0A453N2X0_AEGTS1.440e-6492.17Histone H4 n=2 Tax=Mesangiospermae TaxID=1437183 R... [more]
A0A7S4DKQ9_9EUKA1.910e-6492.11Histone H4 n=4 Tax=Chlorarachniophyceae TaxID=2919... [more]
A0A5D2MDG6_GOSTO2.020e-6491.96Histone H4 (Fragment) n=1 Tax=Gossypium tomentosum... [more]
A0A8B8CHU8_CRAVI2.080e-6491.38Histone H4 n=4 Tax=Bilateria TaxID=33213 RepID=A0A... [more]
A0A7S3CDM2_9CHLO2.340e-6493.81Histone H4 n=4 Tax=Eukaryota TaxID=2759 RepID=A0A7... [more]
W5QFR6_SHEEP3.080e-6495.37Histone H4 n=4 Tax=Laurasiatheria TaxID=314145 Rep... [more]
A0A4D9CLB0_9STRA3.090e-6492.92Histone H4 n=1 Tax=Nannochloropsis salina CCMP1776... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10144contigEcto-sp13_S_contig10144:2558..2950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop1
Start0
Seed ortholog score206.5
Seed ortholog evalue7.8e-51
Seed eggNOG ortholog4565.Traes_1AS_4BB379513.1
Model size393
KEGG koko:K11254
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.protein heterodimerization activity
EggNOG OGs37ZQ9@33090,3GPFG@35493,3II7E@38820,3KZS7@4447,COG2036@1,KOG3467@2759
Cds size393
COG Functional cat.B
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462510.6312985-CDS-Ecto-sp13_S_contig10144:2557..29501681462510.6312985-CDS-Ecto-sp13_S_contig10144:2557..2950Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10144 2558..2950 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10144.171.1prot_Ecto-sp13_S_contig10144.171.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10144 2558..2950 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10144.171.1

>prot_Ecto-sp13_S_contig10144.171.1 ID=prot_Ecto-sp13_S_contig10144.171.1|Name=mRNA_Ecto-sp13_S_contig10144.171.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp
PLASPSPPPAHNNNYLPLLHKNTPYTNMSGRGKGGKGLGKGGAKRHRKVL
RDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTY
TEHARRKTVTAMDVVYALKRQGRTLYGFGG*
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mRNA from alignment at Ecto-sp13_S_contig10144:2558..2950+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10144.171.1 ID=mRNA_Ecto-sp13_S_contig10144.171.1|Name=mRNA_Ecto-sp13_S_contig10144.171.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10144:2558..2950+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTCTGGCCTCGCCCTCGCCCCCACCTGCTCACAACAACAATTATCTTCC
TCTTCTCCACAAGAACACACCTTACACAAACATGTCTGGACGCGGAAAGG
GCGGTAAGGGTCTGGGCAAGGGAGGCGCCAAGCGTCACCGCAAGGTACTG
CGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGCCTGGCTCG
CCGTGGCGGTGTGAAGCGTATCTCGGGACTCATCTACGAGGAGACCCGCG
GCGTGCTCAAGGTGTTCCTCGAGAACGTTATCCGCGACTCGGTGACCTAC
ACCGAGCACGCCCGCCGGAAGACCGTGACGGCCATGGACGTGGTGTACGC
CCTCAAGCGCCAGGGCCGTACCCTGTACGGTTTCGGCGGCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10144:2558..2950+

>mRNA_Ecto-sp13_S_contig10144.171.1 ID=mRNA_Ecto-sp13_S_contig10144.171.1|Name=mRNA_Ecto-sp13_S_contig10144.171.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10144:2558..2950+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTCTGGCCTCGCCCTCGCCCCCACCTGCTCACAACAACAATTATCTTCC
TCTTCTCCACAAGAACACACCTTACACAAACATGTCTGGACGCGGAAAGG
GCGGTAAGGGTCTGGGCAAGGGAGGCGCCAAGCGTCACCGCAAGGTACTG
CGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGCCTGGCTCG
CCGTGGCGGTGTGAAGCGTATCTCGGGACTCATCTACGAGGAGACCCGCG
GCGTGCTCAAGGTGTTCCTCGAGAACGTTATCCGCGACTCGGTGACCTAC
ACCGAGCACGCCCGCCGGAAGACCGTGACGGCCATGGACGTGGTGTACGC
CCTCAAGCGCCAGGGCCGTACCCTGTACGGTTTCGGCGGCTAA
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