mRNA_Ecto-sp13_S_contig62910.17030.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig62910.17030.1
Unique NamemRNA_Ecto-sp13_S_contig62910.17030.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig62910.17030.1 vs. uniprot
Match: UPI001E3F314E (hypothetical protein n=1 Tax=Marinibactrum sp. C21 TaxID=2904075 RepID=UPI001E3F314E)

HSP 1 Score: 65.1 bits (157), Expect = 2.070e-10
Identity = 33/82 (40.24%), Postives = 52/82 (63.41%), Query Frame = 1 
Query:    7 MSSAASLTDLQATPTEELIPDLMESMLHNAHTAGNDPDFDQKVESAYEKLMGVSYYPSTPSTMYVRGFPGHGKTTIYKVAAK 252
            M S   +   +AT T++++  L+  ML   +T G + + DQK++ A++ L GV + P T +  Y+RGFPG GKTT Y+VAA+
Sbjct:    1 MISKPEIAIKEAT-TDQIVDRLILDMLQRFYTHGVNVEIDQKIQLAWQTLRGVEFLPRTVTPTYLRGFPGQGKTTSYRVAAQ 81
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BLAST of mRNA_Ecto-sp13_S_contig62910.17030.1 vs. uniprot
Match: A0A5S3UZA7_9GAMM (Uncharacterized protein n=4 Tax=Pseudoalteromonas aurantia TaxID=43654 RepID=A0A5S3UZA7_9GAMM)

HSP 1 Score: 57.8 bits (138), Expect = 7.800e-8
Identity = 27/72 (37.50%), Postives = 43/72 (59.72%), Query Frame = 1 
Query:   34 LQATPTEELIPDLMESMLHNAHTAGNDPDFDQKVESAYEKLMGVSYYPSTPSTMYVRGFPGHGKTTIYKVAA 249
            L+   T+ ++  L+  ML   HT G   D D+++E+A+    G ++   + +  Y+RGFPG GKTT Y+VAA
Sbjct:   19 LKEATTDIIVERLILDMLQKFHTRGAIKDLDERIENAWLDFRGTTFLARSVTPTYLRGFPGQGKTTSYRVAA 90
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BLAST of mRNA_Ecto-sp13_S_contig62910.17030.1 vs. uniprot
Match: A0A2N2AMW6_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium HGW-Gammaproteobacteria-1 TaxID=2013791 RepID=A0A2N2AMW6_9GAMM)

HSP 1 Score: 57.8 bits (138), Expect = 7.810e-8
Identity = 27/61 (44.26%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:   70 LMESMLHNAHTAGNDPDFDQKVESAYEKLMGVSYYPSTPSTMYVRGFPGHGKTTIYKVAAK 252
            L+  ML  AHTAG +P    ++E+A+ K   + +    P++ Y+RGFPGHGKTT Y  AA+
Sbjct:   17 LVRDMLQRAHTAGVNPARIAQIEAAWLKRFDLPFVKYKPTSSYLRGFPGHGKTTAYLSAAR 77
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BLAST of mRNA_Ecto-sp13_S_contig62910.17030.1 vs. uniprot
Match: UPI0004E442F2 (hypothetical protein n=7 Tax=Vibrio cholerae TaxID=666 RepID=UPI0004E442F2)

HSP 1 Score: 52.4 bits (124), Expect = 6.220e-6
Identity = 31/88 (35.23%), Postives = 44/88 (50.00%), Query Frame = 1 
Query:    4 PMSSAASLTDLQATPTEEL---IPDLMESMLHNAHTAGNDPDFDQKVESAYEKLMGVSYYPSTPST--MYVRGFPGHGKTTIYKVAAK 252
            P SS   + D    P   +   IPDL   +L   HT G +   D  VE A+ KL G +Y         ++V+G PG GKTT +++A+K
Sbjct:   15 PASSIKKMGDSSGLPMMRIATIIPDLQNDILRTMHTNGQNKVIDALVEKAFLKLNGFAYRNRADRVVPLFVKGPPGQGKTTAFRIASK 102
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BLAST of mRNA_Ecto-sp13_S_contig62910.17030.1 vs. uniprot
Match: A0A290Q280_VIBAN (Uncharacterized protein n=6 Tax=Vibrio anguillarum TaxID=55601 RepID=A0A290Q280_VIBAN)

HSP 1 Score: 50.1 bits (118), Expect = 4.060e-5
Identity = 27/84 (32.14%), Postives = 45/84 (53.57%), Query Frame = 1 
Query:    7 MSSAASLTDLQATPTEELIPDLMESMLHNAHTAGNDPDFDQKVESAYEKLMGVSY--YPSTPSTMYVRGFPGHGKTTIYKVAAK 252
            + + A+   +  T   EL+P + + +L   HT G +P+ D  VE A++++    Y       +  YV+G PG GKTT +KVA +
Sbjct:   13 IENMANDVGMTVTRVAELVPQITKDILRTWHTKGLNPENDALVERAWKEIFKYPYTNISDDVAPAYVKGPPGQGKTTAFKVATE 96
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig62910.17030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI001E3F314E2.070e-1040.24hypothetical protein n=1 Tax=Marinibactrum sp. C21... [more]
A0A5S3UZA7_9GAMM7.800e-837.50Uncharacterized protein n=4 Tax=Pseudoalteromonas ... [more]
A0A2N2AMW6_9GAMM7.810e-844.26Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
UPI0004E442F26.220e-635.23hypothetical protein n=7 Tax=Vibrio cholerae TaxID... [more]
A0A290Q280_VIBAN4.060e-532.14Uncharacterized protein n=6 Tax=Vibrio anguillarum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig62910contigEcto-sp13_S_contig62910:540..791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size252
Hectar predicted targeting categoryother localisation
Exons1
Cds size246
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463873.4015415-UTR-Ecto-sp13_S_contig62910:539..5451681463873.4015415-UTR-Ecto-sp13_S_contig62910:539..545Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig62910 540..545 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463873.412049-CDS-Ecto-sp13_S_contig62910:545..7911681463873.412049-CDS-Ecto-sp13_S_contig62910:545..791Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig62910 546..791 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig62910.17030.1prot_Ecto-sp13_S_contig62910.17030.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig62910 546..791 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig62910.17030.1

>prot_Ecto-sp13_S_contig62910.17030.1 ID=prot_Ecto-sp13_S_contig62910.17030.1|Name=mRNA_Ecto-sp13_S_contig62910.17030.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
MSSAASLTDLQATPTEELIPDLMESMLHNAHTAGNDPDFDQKVESAYEKL
MGVSYYPSTPSTMYVRGFPGHGKTTIYKVAAK
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mRNA from alignment at Ecto-sp13_S_contig62910:540..791+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig62910.17030.1 ID=mRNA_Ecto-sp13_S_contig62910.17030.1|Name=mRNA_Ecto-sp13_S_contig62910.17030.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62910:540..791+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATTCCTATGAGTTCAGCCGCCAGTCTTACCGATCTTCAAGCGACGCCAAC
GGAGGAGCTGATTCCAGATCTTATGGAATCCATGCTGCACAATGCTCACA
CCGCCGGCAATGACCCGGATTTTGATCAGAAAGTAGAGTCCGCTTACGAA
AAATTGATGGGTGTCTCCTATTATCCATCTACCCCCTCGACGATGTATGT
TCGAGGCTTTCCTGGCCACGGTAAGACAACCATCTACAAGGTCGCTGCAA
AA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig62910:540..791+

>mRNA_Ecto-sp13_S_contig62910.17030.1 ID=mRNA_Ecto-sp13_S_contig62910.17030.1|Name=mRNA_Ecto-sp13_S_contig62910.17030.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62910:540..791+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGTTCAGCCGCCAGTCTTACCGATCTTCAAGCGACGCCAACGGAGGA
GCTGATTCCAGATCTTATGGAATCCATGCTGCACAATGCTCACACCGCCG
GCAATGACCCGGATTTTGATCAGAAAGTAGAGTCCGCTTACGAAAAATTG
ATGGGTGTCTCCTATTATCCATCTACCCCCTCGACGATGTATGTTCGAGG
CTTTCCTGGCCACGGTAAGACAACCATCTACAAGGTCGCTGCAAAA
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