mRNA_Ecto-sp13_S_contig6247.16977.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6247.16977.1
Unique NamemRNA_Ecto-sp13_S_contig6247.16977.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6247.16977.1 vs. uniprot
Match: D8LDZ0_ECTSI (VWFA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDZ0_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 8.150e-36
Identity = 133/141 (94.33%), Postives = 135/141 (95.74%), Query Frame = 3 
Query:  165 AAEASTAMQVDADDDDGTLLAQALEMSMMDGDEAENMRIAMEMSMAPDTSDPPVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GAGEFFDPSFVQSLLDQIPNLDPKDPRLQAGGGDGSEAKKE 584
            AA A+TAMQVDADDDDGTLLAQALEMSMM+GDEAENMRIAMEMSM PDTSDP   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GAGEFFDPSFVQSLLDQIPNLDPKDPRLQAGGGDGSEAKKE
Sbjct:  294 AAGAATAMQVDADDDDGTLLAQALEMSMMEGDEAENMRIAMEMSMVPDTSDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGEFFDPSFVQSLLDQIPNLDPKDPRLQAGGGDGSEAKKE 434
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6247.16977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDZ0_ECTSI8.150e-3694.33VWFA domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6247contigEcto-sp13_S_contig6247:1857..5447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score143.7
Seed ortholog evalue7e-32
Seed eggNOG ortholog2880.D8LDZ0
Preferred namePSMD4
Model size1431
KEGG rclassRC00002,RC00078
KEGG koko:K00889,ko:K03029
KEGG ReactionR03469
KEGG Pathwayko00562,ko01100,ko03050,ko04011,ko04070,ko04072,ko04139,ko04144,ko04666,ko04810,ko05169,ko05231,map00562,map01100,map03050,map04011,map04070,map04072,map04139,map04144,map04666,map04810,map05169,map05231
KEGG ModuleM00130,M00341
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000278,GO:0000280,GO:0000502,GO:0000819,GO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005838,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007088,GO:0007276,GO:0007283,GO:0007346,GO:0008134,GO:0008150,GO:0008152,GO:0008270,GO:0008540,GO:0008541,GO:0009056,GO:0009057,GO:0009896,GO:0009987,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0016043,GO:0016579,GO:0019538,GO:0019899,GO:0019941,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0022624,GO:0030071,GO:0030163,GO:0031331,GO:0031593,GO:0031624,GO:0031974,GO:0031981,GO:0032182,GO:0032270,GO:0032436,GO:0032501,GO:0032504,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034622,GO:0036211,GO:0036435,GO:0042802,GO:0043130,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043248,GO:0043412,GO:0043632,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044390,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046872,GO:0046914,GO:0048232,GO:0048285,GO:0048518,GO:0048522,GO:0048609,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051247,GO:0051276,GO:0051603,GO:0051704,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0062033,GO:0065003,GO:0065007,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0090068,GO:0098813,GO:0140014,GO:0140030,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903047,GO:1903052,GO:1903364,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2001252
Exons4
EggNOG free text desc.Protein of unknown function (DUF1631)
EggNOG OGsCOG5148@1,KOG2884@2759
EC2.7.1.68
Cds size441
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03051,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6247.16977.1prot_Ecto-sp13_S_contig6247.16977.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6247 2042..4642 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463869.0279138-UTR-Ecto-sp13_S_contig6247:1856..20411681463869.0279138-UTR-Ecto-sp13_S_contig6247:1856..2041Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6247 1857..2041 +
1681463869.0826297-UTR-Ecto-sp13_S_contig6247:4642..54471681463869.0826297-UTR-Ecto-sp13_S_contig6247:4642..5447Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6247 4643..5447 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463869.0403643-CDS-Ecto-sp13_S_contig6247:2041..20471681463869.0403643-CDS-Ecto-sp13_S_contig6247:2041..2047Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6247 2042..2047 +
1681463869.0503175-CDS-Ecto-sp13_S_contig6247:3117..32041681463869.0503175-CDS-Ecto-sp13_S_contig6247:3117..3204Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6247 3118..3204 +
1681463869.0604281-CDS-Ecto-sp13_S_contig6247:3669..39031681463869.0604281-CDS-Ecto-sp13_S_contig6247:3669..3903Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6247 3670..3903 +
1681463869.072111-CDS-Ecto-sp13_S_contig6247:4528..46421681463869.072111-CDS-Ecto-sp13_S_contig6247:4528..4642Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6247 4529..4642 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6247.16977.1

>prot_Ecto-sp13_S_contig6247.16977.1 ID=prot_Ecto-sp13_S_contig6247.16977.1|Name=mRNA_Ecto-sp13_S_contig6247.16977.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=147bp
MQVDADDDDGTLLAQALEMSMMDGDEAENMRIAMEMSMAPDTSDPPVSST
SATTTTAAAAAQPPAPTPPPASSGASANPPPAPAGGDGGGAAGAGEFFDP
SFVQSLLDQIPNLDPKDPRLQAGGGDGSEAKKEGEEDKKDGDDSNK*
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mRNA from alignment at Ecto-sp13_S_contig6247:1857..5447+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6247.16977.1 ID=mRNA_Ecto-sp13_S_contig6247.16977.1|Name=mRNA_Ecto-sp13_S_contig6247.16977.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3591bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6247:1857..5447+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTCCAAGGCCACCGCCGAGCAGGAAGGGGCGACAGCGGCAGACGCGACT
CCGGCGGCGGAGGAGGGCGAACCAGCTGCAGCAGCTGCTGCTGCTGCTGC
TGCCGGCTCTGGCGAGGAAGCGGCAAGGTCTGCCGAGGAGGGGAAGGGGG
CGGAGGGCGGCGACGCTGCGGAAGCGTCTACCGCTATGCAGGTTCGTGAC
GTAGGTGTAGTCAGGGACTGTCCTCCTCGTTCGCGTTTTAAGGACCCTCG
TAACGTGATAGGTCCAGCTTCTGTCGCGCGGATGCCTTCCAGAAGGTCGT
GAGATTCGGGCGCCAGAAGACGGCTCAAGGACGCAGATTTGTGAACGGTC
GAAGAGGGACAGCACTTGTGTGAGGGTGCATGCCATTGCAGAATCGGACA
GGGTACAACCATATGTTTTATGTATGCTTACCGTGCAGAATCGATGAGGG
ACATGGTGCAGTTGCTGACGTTCTTTTATATTTGTATTCGGTTTTTGTAC
GACCCCGTTCCGGACACAAGTCTCGTTGGCAGAAGCCAGCCAACCGGGAA
CGTAGAGCTGTCGGCGAGTGGTGGAAAGAAATGGCGGTGAACGAACGGGG
GTGACTACAAAAGTTTGATAATCAAATACATTAAACGAACAAAGCTTAAG
CAGAGCAGGGAGTGACGGTGGCGCGATAGAGGTTAGAGGAGCGACACGCG
ATGACAAGGCAACTTTTTTTTTTTCCATGTACAATTTGTGGGTTTTCTAA
GCACGAGCTTCTTAGCTGTCTCCGTACAACAGGTGCTGTGCTGGATTTAT
CGTTTTGCGGGAAAATACGTGCCGTTTCGACACGTGCCGTTCGTTTTTGC
GCTGGCTGTCCTTCGCGGAGCTTGCCCATCCTTCCAATAACGACGACATT
AATGATATGGGGAGTGAAGTGAATCACGTGGTGTGTCATTGCGCCATAGG
CCTGGACGAGTCATGCGTCAATCGTTGCGGCCGATGTCGCCTTCTCTACC
GTTGTTGTTGTTGTTGTTGTTGTCTCGCGCGATCCCGCGTTAGCTCGGTC
TCGATCCCTTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCAGACGCACACACCACCCCCACGCGCCCGCAGCANNNNNNNN
NNTTTTTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTCGCCCGCCCCCCGT
TTAGCTCGGTCTCGATCCCTTTCCCCCCCCCCCCCCCCCCCCCCCCCCCT
CTCATCAACAGGTAGACGCCGATGACGACGACGGAACTCTGCTGGCGCAA
GCCCTGGAGATGTCCATGATGGATGGAGACGAGGCCGAGAACATGCGGGT
GAGTCCTTCCTCAAAGGAAAAAGTGCGCAATTTTGTTCGTTTGCGTCGGA
GAGGAGGCGGTGTACGCCAAAGAGAAATGAGGTCACGTGCATATCGTGGG
AAGGAACGTCCATGTAGGCACCGAGAGAGTTTGTGTCTCTTTCTGTTGGT
GCGTCCAAAACAAACGAACGAACACAAGTTCCGTGTGTTCGTGGCTAGGC
CGACCTCTCCGTCGAAGTCCTTGCCACGCCAAGCGGGAAGCGCCTGGGAG
GTTAGGGGAGGAGAGGCTACGTTTGTTCAGTACTTTTATGTCATCGCGTC
TCCCTCCACCCCCGTCCGCGTTGTTGCGGGAAAAAAGAACAGAAAAGCGT
GGTCAATTGAGATGAAACTGATGTAACACCGCCGCCGTTTGCGACGAAAA
CACCAATGTATTCCGTGTGTACCGGGAATGTAAACACACGACGTGTTGTC
TTGCGGCCCCCAGATCGCCATGGAAATGAGCATGGCGCCGGACACGAGCG
ATCCACCAGTATCATCGACATCGGCAACGACAACGACGGCGGCGGCCGCG
GCGCAACCCCCAGCCCCTACCCCCCCCCCGGCCTCCAGCGGCGCCAGCGC
AAACCCTCCTCCGGCCCCGGCGGGGGGGGACGGAGGAGGAGCGGCAGGGG
CGGGAGAATTTTTCGATCCCTCGTTTGTTCAGTCCCTTTTGGACCAGGTG
AGACAGCTACTTGAGGTTTTTGTCTCGAGGGGGTACGGGAAGTGCATGTA
TGTGTGTGTGTGTGTCTTGACTACTCCGGTAGCGTCGACCCTGTTACATT
ACCGGCTAATCGACGAAATTTTGTAAGTCTCAGTGCGGTTGAACACAGAA
AATGCTTTCTATAGGCTTTGGTCTGGGCCCCCACAAGAGTGTGTGTGTGC
GTGGTGCAGAGGACGTTTTGATGAGTTCTTGACTGACGACCAATTCAACG
TTGATTTTTTTTTCTGGTTTCAAAGAAAAAGAACGCCCAGCGTTCACGCA
CGAGACGCGTTAGCTCTTTACGCCACAGCTCAATGTTCCGACACGATCGC
GGACGAGCGTTTGCGCAATGCAACACAAGCAGGACCTTCTAATGTCAGGG
TCGGCGTTTGTCCTAGACAGATGTTCCTCCCTCTCTGTCTCGGAGATCGC
ACTCCATCCAACATCCCGCAAGGAATGAGTCTCTCCCGATCTGTGTATCC
CCCTGTTCTGTCTACGTCTTCTCCCGCTCGGCCCGTTTTCCAACACCGTC
TTTCTCTGGCACCAAATTCTTATCGTGCGTGTGTGCGTGTGTCTCTCGCA
TCATCGGGATGTATGGCGACAGATCCCAAACTTAGACCCGAAAGACCCTC
GCCTCCAAGCCGGCGGGGGTGACGGGAGCGAGGCCAAGAAGGAAGGGGAG
GAGGACAAGAAGGACGGAGACGACTCGAATAAGTAGGCACAGCTGTGCAA
CGTGTGACAGCCAGCACCAGTATCATCATCATCATCACCAGCAGCAGCAG
CAGCTGCATCATCAGGAGCGAAGAAAAACACACTCAGTGTGCTTGCTGCA
GCAAGAGCAGCAAGAGCAGCAGCAGCAGAGACAAGAGGAGCGCAGTGAAA
TCTACGCCGTGGTTGAAGGAACTGCTGTTGTTGTTTTGTGTTGCACCAGC
GTTGGGAGGGAAGTAAAGCCTTCGCGGGTAGGGGAGGAGGGGAGAGTCTA
ACCTGAGGTTTTGCCACGGTTTCGAGAGGCGGTTTTATTGGCGCGGGAGG
CTGTCCTAGTTGATCTCAAAAAATGACTGTCCCGTGTGTCGGAGGTATCG
CCGTCGAAAGTGCTTTTCGGATGCCCTTCCAAGGGTTCCCCAGCAGCAGC
AGCTGCAGCAGCAGCAGCAGCGTTTGGAATAGTACAACAGCAGAGGAATT
GCGTGCGGTCTAACTTTGCCGACAAAAAAAAAGAAAACGACAAAATGCGG
TGGGTGTTCTGCTGACAGCAGTGCAGCATGTGTTTTGTTTGGTCCTCCCA
TCCTTGTGCGGAGGTGTGCAGAAGTGCATCCGCCCCTGTGTACGCGTGGT
GATGGCGACGAGGTGATTGCTGTCGTGCTTACGACGCAAATGTGTTGCTG
TGATGTTACGATGGTTCTTTGCTGTTGGGAGGACCTGTAGGGCGGCTGGG
GTTCCATGTTTTGTTGTTCGGTGATGATGAGGATGTGGGGGCTGAAAAGG
GCTACAATTTTTTTTGTCGCGATGGACTTATTAACATAACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6247:1857..5447+

>mRNA_Ecto-sp13_S_contig6247.16977.1 ID=mRNA_Ecto-sp13_S_contig6247.16977.1|Name=mRNA_Ecto-sp13_S_contig6247.16977.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=441bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6247:1857..5447+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGGTAGACGCCGATGACGACGACGGAACTCTGCTGGCGCAAGCCCT
GGAGATGTCCATGATGGATGGAGACGAGGCCGAGAACATGCGGATCGCCA
TGGAAATGAGCATGGCGCCGGACACGAGCGATCCACCAGTATCATCGACA
TCGGCAACGACAACGACGGCGGCGGCCGCGGCGCAACCCCCAGCCCCTAC
CCCCCCCCCGGCCTCCAGCGGCGCCAGCGCAAACCCTCCTCCGGCCCCGG
CGGGGGGGGACGGAGGAGGAGCGGCAGGGGCGGGAGAATTTTTCGATCCC
TCGTTTGTTCAGTCCCTTTTGGACCAGATCCCAAACTTAGACCCGAAAGA
CCCTCGCCTCCAAGCCGGCGGGGGTGACGGGAGCGAGGCCAAGAAGGAAG
GGGAGGAGGACAAGAAGGACGGAGACGACTCGAATAAGTAG
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