mRNA_Ecto-sp13_S_contig62451.16974.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig62451.16974.1
Unique Name	mRNA_Ecto-sp13_S_contig62451.16974.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

[Close]

BLAST of mRNA_Ecto-sp13_S_contig62451.16974.1 vs. uniprot
Match: A0A6H5JX42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX42_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 1.730e-58
Identity = 96/105 (91.43%), Postives = 100/105 (95.24%), Query Frame = 3

Query:  363 MQELYKVYVKERKNSVAVELSYPSERYQISRPRGQVLYYIAGWAASKALTHQARHNLSQDWVRVVQHNTRRSSREAIFTNVMLRDFVAGVDQKNDLKNGPGLLYP 677
            + ELYKVYVKERK+SVAVELSYPSERYQISRPRGQVL+ IAGWA SKALTHQARHNLSQDWVRVVQHNTRRSSREA+FTNVMLRDFVAGVD KNDLKNGPG LYP
Sbjct:   11 ISELYKVYVKERKDSVAVELSYPSERYQISRPRGQVLHDIAGWATSKALTHQARHNLSQDWVRVVQHNTRRSSREAMFTNVMLRDFVAGVDHKNDLKNGPGRLYP 115

[Close]

BLAST of mRNA_Ecto-sp13_S_contig62451.16974.1 vs. uniprot
Match: A0A6H5K201_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K201_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 4.810e-47
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 3

Query:  429 PSERYQISRPRGQVLYYIAGWAASKALTHQARHNLSQDWVRVVQHNTRRSSREAIFTNVMLRDFVAGVDQKNDLKNGPGLLYP 677
            PSERYQISRPRGQVLYYIAGWAASKALTHQARHNLSQDWVRVVQHNTRRSSREAIFTNVMLRDFVAGVDQKNDLKNGPGLLYP
Sbjct:  172 PSERYQISRPRGQVLYYIAGWAASKALTHQARHNLSQDWVRVVQHNTRRSSREAIFTNVMLRDFVAGVDQKNDLKNGPGLLYP 254

[Close]

BLAST of mRNA_Ecto-sp13_S_contig62451.16974.1 vs. uniprot
Match: A0A6H5KGF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF3_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.160e-38
Identity = 72/104 (69.23%), Postives = 80/104 (76.92%), Query Frame = 3

Query:  315 PCPRSSLRTAPHPLSIMQELYKVYVKERKNSVAVELSYPSERYQISRPRGQVLYYIAGWAASKALTHQARHNLSQDWVRVVQHNTRRSSREAIFTNVMLRDFVA 626
            P P SSL      + +   +  VY KERK+SVAVELSYPSER+QI++P GQVLYYIAGWAASKA TH  RHNLSQDWVRVVQHNTRRS  EAI T+ MLRDF A
Sbjct:   27 PWPWSSLTRVKXAILLRLHVTAVYAKERKDSVAVELSYPSERHQITKPCGQVLYYIAGWAASKAWTHHRRHNLSQDWVRVVQHNTRRSRGEAICTDSMLRDFAA 130

[Close]

BLAST of mRNA_Ecto-sp13_S_contig62451.16974.1 vs. uniprot
Match: A0A6H5K5B1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5B1_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 1.590e-35
Identity = 73/105 (69.52%), Postives = 79/105 (75.24%), Query Frame = 3

Query:  363 MQELYKVYVKERKNSVAVELSYPSERYQISRPRGQVLYYIAGWAASKALTHQARHNLSQDWVRVVQHNTRRSSREAIFTNVMLRDFVAGVDQKNDLKNGPGLLYP 677
            MQELY+VYVKERK+SVAVELSYPSERYQI++PRG                    HNLSQDWVRVVQHNTRRSS EAI T+ MLRD VA VD KND+KNGPGLLYP
Sbjct:    1 MQELYQVYVKERKDSVAVELSYPSERYQITKPRG--------------------HNLSQDWVRVVQHNTRRSSGEAICTDSMLRDSVAKVDSKNDMKNGPGLLYP 85

[Close]

BLAST of mRNA_Ecto-sp13_S_contig62451.16974.1 vs. uniprot
Match: A0A6H5JQL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQL1_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 1.860e-35
Identity = 70/84 (83.33%), Postives = 76/84 (90.48%), Query Frame = 3

Query:  366 QELY-KVYVKERKNSVAVELSYPSERYQISRPRGQVLYYIAGWAASKALTHQARHNLSQDWVRVVQHNTRRSSREAIFTNVMLR 614
            +ELY KV VKERK+SVAVELSYPSERYQI++ RGQVLYYIAGWAASKA TH+ RHNLSQDWVRVVQHNTRRSS EAI T+ MLR
Sbjct:  132 KELYNKVNVKERKDSVAVELSYPSERYQITKSRGQVLYYIAGWAASKAWTHKRRHNLSQDWVRVVQHNTRRSSGEAICTDSMLR 215

[Close]

BLAST of mRNA_Ecto-sp13_S_contig62451.16974.1 vs. uniprot
Match: A0A6H5KKY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKY9_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 8.830e-30
Identity = 66/105 (62.86%), Postives = 72/105 (68.57%), Query Frame = 3

Query:  363 MQELYKVYVKERKNSVAVELSYPSERYQISRPRGQVLYYIAGWAASKALTHQARHNLSQDWVRVVQHNTRRSSREAIFTNVMLRDFVAGVDQKNDLKNGPGLLYP 677
            MQELYKVYVK+RK+SVAVELSYPS RYQI++PRGQVLYY+AGWAASKA THQ  HNLS      V  NT                  A VD KND+KNG GLLYP
Sbjct:    1 MQELYKVYVKKRKDSVAVELSYPSVRYQITQPRGQVLYYVAGWAASKAWTHQRSHNLS------VSSNT---------------TLAAKVDSKNDMKNGSGLLYP 84

[Close]

BLAST of mRNA_Ecto-sp13_S_contig62451.16974.1 vs. uniprot
Match: A0A6H5JIR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR5_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.180e-29
Identity = 59/106 (55.66%), Postives = 76/106 (71.70%), Query Frame = 3

Query:  360 IMQELYKVYVKERKNSVAVELSYPSERYQISRPRGQVLYYIAGWAASKALTHQARHNLSQDWVRVVQHNTRRSSREAIFTNVMLRDFVAGVDQKNDLKNGPGLLYP 677
            + QELY   V+ERK + A+++ YPS +Y IS+ RGQVLYY+ GW AS+A THQ R NLS DW R+V+HNT +SS  A   + M+  F   VD+KNDLK+GP LLYP
Sbjct:  231 VAQELYNFLVEERKRANAIKVLYPSTQYLISQSRGQVLYYVCGWMASRAWTHQRRRNLSPDWYRIVEHNTYQSSEMAKARDPMIGQFAEVVDRKNDLKHGPRLLYP 336

[Close]

BLAST of mRNA_Ecto-sp13_S_contig62451.16974.1 vs. uniprot
Match: A0A6H5K3B5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3B5_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 5.640e-17
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 3

Query:  363 MQELYKVYVKERKNSVAVELSYPSERYQISRPRGQVLYYIAG 488
            MQELY+VYVKERKNSVAVELSYPSERYQISRPRGQVLYYIAG
Sbjct:    1 MQELYEVYVKERKNSVAVELSYPSERYQISRPRGQVLYYIAG 42

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig62451.16974.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig62451.16974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8


Match Name	E-value	Identity	Description
A0A6H5JX42_9PHAE	1.730e-58	91.43	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K201_9PHAE	4.810e-47	100.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KGF3_9PHAE	1.160e-38	69.23	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K5B1_9PHAE	1.590e-35	69.52	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JQL1_9PHAE	1.860e-35	83.33	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KKY9_9PHAE	8.830e-30	62.86	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JIR5_9PHAE	2.180e-29	55.66	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K3B5_9PHAE	5.640e-17	97.62	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig62451	contig	Ecto-sp13_S_contig62451:48..724 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Model size	679
Hectar predicted targeting category	other localisation
Exons	1
Cds size	315

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681463868.7830913-UTR-Ecto-sp13_S_contig62451:47..409	1681463868.7830913-UTR-Ecto-sp13_S_contig62451:47..409	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig62451 48..409 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681463868.7962878-CDS-Ecto-sp13_S_contig62451:409..724	1681463868.7962878-CDS-Ecto-sp13_S_contig62451:409..724	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig62451 410..724 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig62451.16974.1	prot_Ecto-sp13_S_contig62451.16974.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig62451 410..724 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig62451:48..724+
coding sequence from alignment at Ecto-sp13_S_contig62451:48..724+

protein sequence of mRNA_Ecto-sp13_S_contig62451.16974.1

>prot_Ecto-sp13_S_contig62451.16974.1 ID=prot_Ecto-sp13_S_contig62451.16974.1|Name=mRNA_Ecto-sp13_S_contig62451.16974.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
MQELYKVYVKERKNSVAVELSYPSERYQISRPRGQVLYYIAGWAASKALT
HQARHNLSQDWVRVVQHNTRRSSREAIFTNVMLRDFVAGVDQKNDLKNGP
GLLYP

mRNA from alignment at Ecto-sp13_S_contig62451:48..724+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig62451.16974.1 ID=mRNA_Ecto-sp13_S_contig62451.16974.1|Name=mRNA_Ecto-sp13_S_contig62451.16974.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=677bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62451:48..724+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCACTACCTATCCTGCATCATCAACCACGTGGAGGAGGTGGGTCGATAC
GGTAGGAACTAGTAAGCGAGGAATTGGTTTACCGAAGGGTTTGTGTGTCA
TTTCCGCACCCGTGTGTGAAGAAGTCAAACTTCCACTCTCCACGTGTACG
TTCCAGCGATGATTCGAGGTTTGAGAGAGCGCGTCGTGTGTTTGATTCTG
GGAAGGTGGTGTGTTGGAGCAACAACCACCCTTGGCGCTTAGGTTTAGAG
TTTACCTTTCCGATTTTTTTTTATTTCACTTGTATTTCACGGTCATGTAG
CTGAGGTACTCTCCCCGTGCCCGCGCTCCTCTCTTCGAACCGCTCCCCAT
CCCCTCTCGATAATGCAGGAGTTGTACAAGGTGTACGTGAAAGAGCGCAA
GAATTCCGTGGCCGTGGAGCTCTCGTACCCCAGTGAAAGATATCAGATCT
CAAGACCGCGCGGGCAAGTCCTGTACTACATCGCCGGGTGGGCCGCCAGC
AAGGCTTTGACGCATCAAGCAAGACACAATCTTTCCCAGGATTGGGTGCG
TGTCGTCCAACACAACACTCGCCGGTCCAGTCGGGAGGCGATATTTACTA
ATGTCATGCTGAGAGATTTCGTAGCGGGAGTCGATCAGAAGAACGACCTG
AAGAACGGTCCAGGACTTCTTTACCCG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig62451:48..724+

>mRNA_Ecto-sp13_S_contig62451.16974.1 ID=mRNA_Ecto-sp13_S_contig62451.16974.1|Name=mRNA_Ecto-sp13_S_contig62451.16974.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62451:48..724+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGGAGTTGTACAAGGTGTACGTGAAAGAGCGCAAGAATTCCGTGGC
CGTGGAGCTCTCGTACCCCAGTGAAAGATATCAGATCTCAAGACCGCGCG
GGCAAGTCCTGTACTACATCGCCGGGTGGGCCGCCAGCAAGGCTTTGACG
CATCAAGCAAGACACAATCTTTCCCAGGATTGGGTGCGTGTCGTCCAACA
CAACACTCGCCGGTCCAGTCGGGAGGCGATATTTACTAATGTCATGCTGA
GAGATTTCGTAGCGGGAGTCGATCAGAAGAACGACCTGAAGAACGGTCCA
GGACTTCTTTACCCG