mRNA_Ecto-sp13_S_contig6232.16959.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6232.16959.1
Unique NamemRNA_Ecto-sp13_S_contig6232.16959.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6232.16959.1 vs. uniprot
Match: A0A6H5KY29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY29_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.220e-7
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 2 
Query:  605 MDAYRRSRVAAAPTRSSAPAEASRSHPCGSSPA 703
            MDAYRRSRVA APTRSSAPAEASR HPCGSSPA
Sbjct:    1 MDAYRRSRVAVAPTRSSAPAEASRLHPCGSSPA 33
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6232.16959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KY29_9PHAE1.220e-793.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6232contigEcto-sp13_S_contig6232:875..6039 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1743
Hectar predicted targeting categoryother localisation
Exons5
Cds size1743
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463867.5670984-CDS-Ecto-sp13_S_contig6232:874..14721681463867.5670984-CDS-Ecto-sp13_S_contig6232:874..1472Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6232 875..1472 +
1681463867.58508-CDS-Ecto-sp13_S_contig6232:1986..26841681463867.58508-CDS-Ecto-sp13_S_contig6232:1986..2684Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6232 1987..2684 +
1681463867.596594-CDS-Ecto-sp13_S_contig6232:3351..35451681463867.596594-CDS-Ecto-sp13_S_contig6232:3351..3545Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6232 3352..3545 +
1681463867.6066196-CDS-Ecto-sp13_S_contig6232:4057..42151681463867.6066196-CDS-Ecto-sp13_S_contig6232:4057..4215Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6232 4058..4215 +
1681463867.616595-CDS-Ecto-sp13_S_contig6232:5944..60391681463867.616595-CDS-Ecto-sp13_S_contig6232:5944..6039Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6232 5945..6039 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6232.16959.1prot_Ecto-sp13_S_contig6232.16959.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6232 875..6039 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6232.16959.1

>prot_Ecto-sp13_S_contig6232.16959.1 ID=prot_Ecto-sp13_S_contig6232.16959.1|Name=mRNA_Ecto-sp13_S_contig6232.16959.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=581bp
RLLSSRWPDRVRVFDSLVEACAAAAAAGGARAGRRERRAEKHTASAAAAT
AAAPAVAVPPVVAAGPAVAESAEPAQVPEPFRAPFQAPFQAPVQALVQAP
VRQPVLAPVPEPVQAPLPEPGGSLLHPFSPQAPPPSQPTPPEAAVAAAAA
ARWSSGRGSSGKGPKGKAVAMVVVLGGTHDAGRGGLRFTGRGMRIVGVSA
ADGRLPTVEGRRCSHAIKCTGRGVSIASLRVVAGASTNTDDDEDRHHAPS
SPTLAPAPATELPAPPPAAAAPPPPPPPTTTTTTVQDGKRAAYDHHHALA
PAPVTARGLPIPKPSSSTTKKTTTAAATVRDGKCATATATAAEGGTPNDT
RYDGDHHHHAPLTSTLAPAPAAAAPRLPSPTPTTATITAARGGTCATATA
GLARKGGGVGGGPGEGARRKRPRLVFDRNAAQQLVRDSTAAAAAASVDSD
KRRRRPRRVSRGKASHFVETRRGLAPAHAISVEGGGSVTISGCDVSSRLP
CACVCAAGGGTLAWLEHTRLSDGLGMGLLVCGKAEASASECDFDGMGAAG
VEARGGSTVSLSACTVSGCGKSGVFAQAFSR
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mRNA from alignment at Ecto-sp13_S_contig6232:875..6039+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6232.16959.1 ID=mRNA_Ecto-sp13_S_contig6232.16959.1|Name=mRNA_Ecto-sp13_S_contig6232.16959.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6232:875..6039+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGTTGCTGTCTTCGCGCTGGCCGGATCGGGTGCGCGTCTTCGACTCCCT
GGTGGAGGCCTGCGCGGCCGCCGCAGCCGCAGGGGGCGCAAGGGCCGGTA
GGAGGGAGAGGCGGGCGGAGAAGCACACGGCGTCAGCAGCAGCAGCAACA
GCAGCAGCACCTGCAGTAGCGGTGCCACCGGTAGTGGCGGCGGGACCAGC
TGTAGCAGAATCAGCAGAACCAGCACAAGTCCCGGAACCGTTCCGAGCAC
CGTTCCAAGCACCGTTCCAAGCACCGGTCCAAGCGCTGGTTCAAGCGCCG
GTTCGACAACCGGTCCTAGCACCAGTCCCAGAACCGGTCCAAGCACCGTT
GCCAGAACCAGGCGGGTCATTACTGCATCCATTCTCACCACAAGCACCAC
CGCCATCCCAACCAACACCGCCAGAAGCAGCAGTAGCAGCAGCAGCAGCA
GCAAGATGGAGCTCAGGGCGAGGGTCAAGCGGGAAAGGACCAAAGGGGAA
GGCGGTGGCGATGGTGGTGGTGCTCGGAGGGACGCACGACGCCGGGAGAG
GAGGTCTGCGTTTTACCGGGAGGGGAATGAGAATTGTCGGCGTCAGCGGT
AAGCAAACAGGAGAGGGGGTTTGTTTTTTTTGTAAAGGGGAGACATGGGT
GTGTCGGGAAGGAAATATTAATGTTATTCCCAAAAACGCCGGCTAACATT
CTTTCCCGTGGAGGTCGAAAAAACGTTTTTCTCCTGGAACAAGTCTATCA
CGGCTGAACCCGTAGATCCGGCCGTATGTTGGATGCCCATCCCGCCCCTG
CCTTCTGTTGTTGTTGTTGCTGCTGCTGCTACTGCTGCTGTTGTTGTTGC
CGCCGCTGCTGCTGCTGTATGTGGTTGTTTTTGCTGTTGCTGTTTTTGTC
GTTGGCGGTCCTTCATGTTACCTTCTATCTCCTTCGCAAAATCTCCGTTT
GATATCTCTTGTTCTTCGTGTCAATTACGAAGTACTTCATACTAGAAGTG
TATTTTGTGTTCGCTGCTCTAGTAGGATTGTGCTAACGGTGCACTATGGT
CGATGCACTCCCTCTCGCCAAAACCGAAATAAACACTTCTTCGTTTCAAC
CTGCCGCCGCAGCGGCCGATGGACGCCTACCGACGGTCGAGGGTCGCCGC
TGCTCCCACGCGATCAAGTGCACCGGCAGAGGCGTCTCGATCGCATCCCT
GCGGGTCGTCGCCGGCGCCTCCACCAACACCGACGACGACGAGGACCGCC
ATCACGCCCCATCATCGCCAACGCTAGCACCAGCACCGGCAACTGAGCTG
CCAGCACCACCACCAGCAGCAGCAGCACCACCACCACCACCACCACCAAC
AACAACAACAACAACAGTGCAGGACGGGAAACGTGCTGCTTACGACCACC
ATCACGCCCTAGCACCGGCACCGGTAACAGCACGCGGGTTGCCAATACCA
AAACCATCATCATCGACAACGAAGAAGACGACAACAGCAGCAGCAACAGT
CCGGGACGGAAAGTGCGCCACGGCTACAGCTACGGCTGCTGAGGGTGGAA
CCCCGAACGACACCAGGTACGACGGCGACCACCACCATCACGCCCCACTA
ACATCAACGCTAGCGCCAGCACCGGCAGCCGCCGCACCCAGGCTGCCATC
ACCAACACCGACAACCGCGACGATAACTGCAGCCCGGGGCGGGACATGTG
CTACGGCTACAGCTGGCTTGGCAAGGAAAGGAGGCGGCGTTGGCGGCGGA
CCGGGGGAAGGGGCTCGGAGAAAGCGTCCCCGCCTGGTTTTCGATCGTAA
CGCCGCCCAGGTATGTGGAGCTCGAATTGGAAGGGGCATGCGGGAAGGAT
CGGTGAAGGGACGTTGATTAGGGATAAAGAGGGTCGGCGATGAGGTACGC
GACGGAGATGGATTTGTGCTCGGGAGGCGCACATCTCGTACCTTTGACGG
TGTTGCTCGCTTGGCGTCCACACTTTTTTTATTTTCGTGTTATTGGAGCT
GTTCAGTTGGGGCCCAAAGTCATCTTCCGGCCCCTGGTGCAGGAAAGGCC
TTGCGGTGTCCTCGGCCATGATTGGTTCAGATACGTGCTCTGCACGGCTG
TTGTTCCAAAGCAGGGGTGGCCAAGGGTTAGCAGATCAACCATTTTTTTT
GTCTCTTTTTTTTTCGACGATAACAATCTCCGGGGAGAAGCATCATCTTG
GCGATGTCGGGCAGAGGGTGGTGATGCTCGTTTGATTTGTCGCTTTTGCG
GCTCTGCAAGAGACGATCGTCTTGATCCTACCGAAATCAGGAAAGAGATA
AAAAGGAGAAAAAGGGGGAGGGGGGTTGGCAGTCGTACACGGTCCCATTA
CACATACCTCGGCGTGCATGACCACATCACGCCATGTTGCGCTAGAAAAG
GCAACGCGAAAGGCACCACCCACATCGTACCACTGCTGCCGCGTCATGTT
CTTCTCCTAAATACTAATGACCACGAGCAGCTGGTGCGAGACTCCACAGC
GGCGGCAGCGGCGGCATCGGTGGACAGCGACAAGCGACGACGACGACCGC
GGCGGGTATCGAGAGGTAAAGCTTCCCACTTCGTCGAGACTCGCCGAGGT
TTAGCACCGGCGCACGCCATCTCCGTGGAAGGAGGAGGGTCCGTCACCAT
CTCGGGCTGCGATGTTTCCAGGTGCCAGTTAGCCGGCAGGCACGTCGCAT
CGTCTCGTTGTAGTCGGTCTGTGTGGTCACTCCAGTGGCACACTCGGGCC
CAGGGCCTACTGCAACAAGCTGAACACGCGAATGAAGGGCATCCATCCGT
CCTACGCAAGCAAACAAGGGTCTTGAGTAGCAGCCACAGCAGACAAACGC
ACTCCGGTCGTGAAAAAAATGTTGAGGGACCCCCCTTGTTCGTTCTACTC
GAAGCTGACTCCTCTCTTCGCCTGGAGTCGTGCTGTTCAGCCCCTTTTTC
TCGCGGCGGTGGCAATTGCTGCTTGTCCAGCCCATATCAGGTGCTGGTTG
GTGTTAATGCTGGTTGTGAGGCCCGACTCAAGATTTTCGTGTGTCTCCCA
CCACCTCGGGCCTACCGCATATGTATCGCAAGCTGAACACTTTTCCAGTG
AACTCTTAGACTAGTCAGCGCTGACTCGTCCAATGGTTTGATTTCGTTCT
AAACCCCCCCCAACTGCTCGCTTCGCTTTCCAGCCGCCTTCCCTGCGCTT
GCGTTTGTGCGGCCGGCGGTGGAACCCTCGCTTGGCTGGAGCACACGCGG
CTGTCCGACGGTCTTGGCATGGGGCTGTTGGTTTGCGGAAAGGCGGAGGC
GTCGGCATCGGAGTGCGACTTTGACGGGATGGGGGCCGCGGGTGAGAGAC
GAGGAGGGAGGGGAGGAGGGGTACTCATAGTCGTCCATGCCGTAGTCGCT
TGACCATTAACCTCGCATCCCTACAAAGCTGGGACGGAGCACGTCGGGGG
GGGTGTACTCATAAAGTCGTGCATGCCGTAGTCATTAGGCCATTGACCTC
GCATCCCTACAAAGCTGGGACGGAGCACGCCGGGTTCTCACCGGACCAGG
CTTTCACATCACCAAGCGCGAAGCGCCGTGAGGTATGCGGCGATCCGCAT
GAAGGGTGCGCTGCGTCCTGCTAAGGGTGTTCGGCATCTAGTGCTTACTT
CCTTGTGCACGGATGACAGCTGCGTATGACCTAATTTATTCTCTAGTGCT
TTCACTTCCAGAAACAGTTGTAAGCACTGTGAAACTGTCTCGAGGGTGGT
TGGCCAATGTAACACGACGTGGTGCGAGTATCCCCTTTGCGCGGAGTGAG
GGTTCTCGACCCCGCACAACATAATCTACCGACCACCATTCATGGTTACC
GCAATAAAAAAAACAAAGGCAAACACAAAGCGGCAACCTGGCTACCGAGC
TCACTCAGTGATCGGCTTGTTTTGCAACATCTCTGCCAAGCGACGAAAAC
CCAACCCCGATGGTAAACACCGGGGGGGGGGGAGAGAGGTGAAATATTTT
TACCAACAGACGGGCATGTACATAATACGGAGACAGACACGAGCAGGCGG
GGAGACGTAGATGAGGGGAGGGGAGAGAAAATAGATAGGGCAAACAGAAG
GACATGGTACAGAGACAGAAACGGATAAGAAGACGTCCAGATCGAGAAGA
GGTGAATCAAGCAGCAACAGCCAACAGCGAAAGCGCGAAAATATGTAATG
ATGTGGGTGCGTGGGGATGGCGGCGTGAGAGACGGTGGGAATGTTAACCC
TCTGTCCCACGCGGTTGTTCGCCACCCGTGACCCCTCGAATCACACCAAG
AAGATAACCTCGGCTTTTTTTCCGTCACGCACGGAGAGAAAGAGAAAGAC
AGCGCCACGACTCGCGAAGACATTAAAACTGGGTGCGTTCTGTATGCGTG
TATGCAGAAGGTGCCTGCCTAGTGTGGAACTTCCACGGCGGCAGCTCACA
TTCTCCTCCGCGTATCTGCCGATATCGGGATTTCTTGTTACAACAGGTGT
CCCGATATAGTGCCGGCATGTGCCCAGAGGTTTGATTGGCGCCATAACGG
GCACCGGTACTGTTCAACCAGCACTGTATCGGGACACCTACTGTCGTGGT
ACTTTGGGCGCGAAACCGATTTCACGCTCTTGAGCAAGAACCTGGATTTG
TTTGTTTTCGGCAGCTGTGCGAGCACTCCTTCTCTGTGTATGCTGTAGTC
CTCTCTGATGTTGTGTTGTGTCTTTATTGTAAGCGTCGACCGAGTTGGCC
GACTGACCAGTGAAAATACGTCATTAGTCACAGCAGTGCCGCTGAACAAG
AAAAAAAACGCTCCCAAAAAAGATCATAACGTATGGCCTGGGACGGACAT
GTATCGATGTTGATGCTATCCAGGTGGCATTCTGGGTTTAGGCTAAGTAG
GGTCAGGGTTAGGGTTAGGCTAACCCTAATCCAAATGAATATCAGCCGCG
CGTGCGACAGAAATAGCTGCCTTCCCTCTACAGTGTGACCTCTTTCAAAT
AGCTTCCTTTGGTCCTCTGTAGTGTGACGTCTTTCTAAGTAATAGCTCCT
TTTTTTGTGTGTGGTGGCAGGGGTCGAGGCGAGAGGAGGGTCGACGGTGT
CCCTGTCGGCCTGCACTGTTTCGGGGTGCGGCAAGAGCGGCGTGTTCGCG
CAAGCCTTCTCCAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6232:875..6039+

>mRNA_Ecto-sp13_S_contig6232.16959.1 ID=mRNA_Ecto-sp13_S_contig6232.16959.1|Name=mRNA_Ecto-sp13_S_contig6232.16959.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1743bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6232:875..6039+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGTTGCTGTCTTCGCGCTGGCCGGATCGGGTGCGCGTCTTCGACTCCCT
GGTGGAGGCCTGCGCGGCCGCCGCAGCCGCAGGGGGCGCAAGGGCCGGTA
GGAGGGAGAGGCGGGCGGAGAAGCACACGGCGTCAGCAGCAGCAGCAACA
GCAGCAGCACCTGCAGTAGCGGTGCCACCGGTAGTGGCGGCGGGACCAGC
TGTAGCAGAATCAGCAGAACCAGCACAAGTCCCGGAACCGTTCCGAGCAC
CGTTCCAAGCACCGTTCCAAGCACCGGTCCAAGCGCTGGTTCAAGCGCCG
GTTCGACAACCGGTCCTAGCACCAGTCCCAGAACCGGTCCAAGCACCGTT
GCCAGAACCAGGCGGGTCATTACTGCATCCATTCTCACCACAAGCACCAC
CGCCATCCCAACCAACACCGCCAGAAGCAGCAGTAGCAGCAGCAGCAGCA
GCAAGATGGAGCTCAGGGCGAGGGTCAAGCGGGAAAGGACCAAAGGGGAA
GGCGGTGGCGATGGTGGTGGTGCTCGGAGGGACGCACGACGCCGGGAGAG
GAGGTCTGCGTTTTACCGGGAGGGGAATGAGAATTGTCGGCGTCAGCGCG
GCCGATGGACGCCTACCGACGGTCGAGGGTCGCCGCTGCTCCCACGCGAT
CAAGTGCACCGGCAGAGGCGTCTCGATCGCATCCCTGCGGGTCGTCGCCG
GCGCCTCCACCAACACCGACGACGACGAGGACCGCCATCACGCCCCATCA
TCGCCAACGCTAGCACCAGCACCGGCAACTGAGCTGCCAGCACCACCACC
AGCAGCAGCAGCACCACCACCACCACCACCACCAACAACAACAACAACAA
CAGTGCAGGACGGGAAACGTGCTGCTTACGACCACCATCACGCCCTAGCA
CCGGCACCGGTAACAGCACGCGGGTTGCCAATACCAAAACCATCATCATC
GACAACGAAGAAGACGACAACAGCAGCAGCAACAGTCCGGGACGGAAAGT
GCGCCACGGCTACAGCTACGGCTGCTGAGGGTGGAACCCCGAACGACACC
AGGTACGACGGCGACCACCACCATCACGCCCCACTAACATCAACGCTAGC
GCCAGCACCGGCAGCCGCCGCACCCAGGCTGCCATCACCAACACCGACAA
CCGCGACGATAACTGCAGCCCGGGGCGGGACATGTGCTACGGCTACAGCT
GGCTTGGCAAGGAAAGGAGGCGGCGTTGGCGGCGGACCGGGGGAAGGGGC
TCGGAGAAAGCGTCCCCGCCTGGTTTTCGATCGTAACGCCGCCCAGCAGC
TGGTGCGAGACTCCACAGCGGCGGCAGCGGCGGCATCGGTGGACAGCGAC
AAGCGACGACGACGACCGCGGCGGGTATCGAGAGGTAAAGCTTCCCACTT
CGTCGAGACTCGCCGAGGTTTAGCACCGGCGCACGCCATCTCCGTGGAAG
GAGGAGGGTCCGTCACCATCTCGGGCTGCGATGTTTCCAGCCGCCTTCCC
TGCGCTTGCGTTTGTGCGGCCGGCGGTGGAACCCTCGCTTGGCTGGAGCA
CACGCGGCTGTCCGACGGTCTTGGCATGGGGCTGTTGGTTTGCGGAAAGG
CGGAGGCGTCGGCATCGGAGTGCGACTTTGACGGGATGGGGGCCGCGGGG
GTCGAGGCGAGAGGAGGGTCGACGGTGTCCCTGTCGGCCTGCACTGTTTC
GGGGTGCGGCAAGAGCGGCGTGTTCGCGCAAGCCTTCTCCAGG
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