mRNA_Ecto-sp13_S_contig62176.16942.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig62176.16942.1
Unique NamemRNA_Ecto-sp13_S_contig62176.16942.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig62176.16942.1 vs. uniprot
Match: A0A6H5K0L4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0L4_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 2.600e-26
Identity = 63/80 (78.75%), Postives = 68/80 (85.00%), Query Frame = 1 
Query:   19 VDVVEDIVPPAGVEAVVPSPTVSDETKDAHILAKRDTAGVVDDSADPADAEGADSPEPSPVVPDEKQDPADAGTVVPQAV 258
            VDV E++ P AG+EA V SPTVSDET+DAHILA+RDTA VVD SA P DAEGADSPE  PVVPDEKQDPADAGT VPQAV
Sbjct: 6830 VDVGENVAPTAGLEAAVSSPTVSDETRDAHILAERDTADVVDVSAPPVDAEGADSPESFPVVPDEKQDPADAGTGVPQAV 6909
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BLAST of mRNA_Ecto-sp13_S_contig62176.16942.1 vs. uniprot
Match: D8LIY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY5_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 9.020e-21
Identity = 61/88 (69.32%), Postives = 66/88 (75.00%), Query Frame = 1 
Query:    1 PVKEDTVDVVEDIVPPAGVEAVVPSPTVSDETKDAHILAKRDTAGV--VDDSADPADAEGADSPEPSPVVPDEKQDPADAGTVVPQAV 258
            PV+EDTVD VE    PA +EA V SPTVSDETKDAHILA++DTAGV  VDDSA PA+AE  DS  PSPVVPDEKQ  AD  T V  AV
Sbjct: 4054 PVEEDTVDGVESSAAPADLEAAVSSPTVSDETKDAHILAEQDTAGVHVVDDSATPANAEVTDSWVPSPVVPDEKQGAADGATEVTPAV 4141
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig62176.16942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K0L4_9PHAE2.600e-2678.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIY5_ECTSI9.020e-2169.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig62176contigEcto-sp13_S_contig62176:469..727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size259
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-20_002030.1
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463865.7148929-CDS-Ecto-sp13_S_contig62176:468..7261681463865.7148929-CDS-Ecto-sp13_S_contig62176:468..726Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig62176 469..726 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig62176.16942.1prot_Ecto-sp13_S_contig62176.16942.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig62176 469..726 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig62176.16942.1

>prot_Ecto-sp13_S_contig62176.16942.1 ID=prot_Ecto-sp13_S_contig62176.16942.1|Name=mRNA_Ecto-sp13_S_contig62176.16942.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp
PVKEDTVDVVEDIVPPAGVEAVVPSPTVSDETKDAHILAKRDTAGVVDDS
ADPADAEGADSPEPSPVVPDEKQDPADAGTVVPQAV
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mRNA from alignment at Ecto-sp13_S_contig62176:469..727+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig62176.16942.1 ID=mRNA_Ecto-sp13_S_contig62176.16942.1|Name=mRNA_Ecto-sp13_S_contig62176.16942.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=259bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62176:469..727+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCAGTCAAGGAGGACACCGTGGATGTAGTGGAGGACATCGTACCTCCCGC
CGGTGTCGAAGCAGTGGTGCCATCCCCTACCGTGTCCGACGAGACCAAAG
ATGCCCATATACTCGCCAAGAGAGACACAGCAGGTGTAGTCGACGACAGC
GCAGATCCCGCCGATGCTGAAGGAGCCGACTCTCCGGAACCTTCCCCCGT
GGTGCCCGACGAGAAACAGGATCCCGCCGATGCCGGGACGGTGGTGCCAC
AAGCGGTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig62176:469..727+

>mRNA_Ecto-sp13_S_contig62176.16942.1 ID=mRNA_Ecto-sp13_S_contig62176.16942.1|Name=mRNA_Ecto-sp13_S_contig62176.16942.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62176:469..727+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCAGTCAAGGAGGACACCGTGGATGTAGTGGAGGACATCGTACCTCCCGC
CGGTGTCGAAGCAGTGGTGCCATCCCCTACCGTGTCCGACGAGACCAAAG
ATGCCCATATACTCGCCAAGAGAGACACAGCAGGTGTAGTCGACGACAGC
GCAGATCCCGCCGATGCTGAAGGAGCCGACTCTCCGGAACCTTCCCCCGT
GGTGCCCGACGAGAAACAGGATCCCGCCGATGCCGGGACGGTGGTGCCAC
AAGCGGTG
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