mRNA_Ecto-sp13_S_contig62061.16927.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig62061.16927.1
Unique NamemRNA_Ecto-sp13_S_contig62061.16927.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig62061.16927.1 vs. uniprot
Match: D7FL21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL21_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 8.180e-15
Identity = 45/50 (90.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 MESATSLMARTTTLTTTAPSTKLGTRTMTATARMGRTAAAATTLTIASHA 150
            MESATSL+ RTTTLTTT PS KLGTR MTATARMGRTAAAATTLTIASHA
Sbjct:    1 MESATSLVIRTTTLTTTDPSIKLGTRMMTATARMGRTAAAATTLTIASHA 50
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BLAST of mRNA_Ecto-sp13_S_contig62061.16927.1 vs. uniprot
Match: A0A6H5JUG3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUG3_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 8.790e-13
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 3 
Query:    3 GVRDVLDGSDDHIDDNRPIHQVGDTDDDGXXXXXXXXCSRDDSDDSVACL 152
            GVRDVLD SDD I+DNRPIH+VGDTDD+G        CSRDDSDDSVAC+
Sbjct:   26 GVRDVLDDSDDGINDNRPIHRVGDTDDEGDDEDGANGCSRDDSDDSVACM 75
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BLAST of mRNA_Ecto-sp13_S_contig62061.16927.1 vs. uniprot
Match: D7G601_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G601_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 2.870e-10
Identity = 42/50 (84.00%), Postives = 43/50 (86.00%), Query Frame = 3 
Query:    3 GVRDVLDGSDDHIDDNRPIHQVGDTDDDGXXXXXXXXCSRDDSDDSVACL 152
            GVRDV   SDD IDDNRPIHQVGDTD   XXXXXXXXCSRDDSDDSVAC+
Sbjct:   91 GVRDVFGDSDDDIDDNRPIHQVGDTDXXXXXXXXXXXCSRDDSDDSVACV 140
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BLAST of mRNA_Ecto-sp13_S_contig62061.16927.1 vs. uniprot
Match: D7G6L1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L1_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 3.330e-10
Identity = 42/50 (84.00%), Postives = 43/50 (86.00%), Query Frame = 3 
Query:    3 GVRDVLDGSDDHIDDNRPIHQVGDTDDDGXXXXXXXXCSRDDSDDSVACL 152
            GVRDV   SDD IDDNRPIHQVGDTD   XXXXXXXXCSRDDSDDSVAC+
Sbjct:   50 GVRDVFGDSDDDIDDNRPIHQVGDTDXXXXXXXXXXXCSRDDSDDSVACV 99
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig62061.16927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FL21_ECTSI8.180e-1590.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUG3_9PHAE8.790e-1372.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G601_ECTSI2.870e-1084.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G6L1_ECTSI3.330e-1084.00Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig62061contigEcto-sp13_S_contig62061:206..358 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size153
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_002500.1
Cds size153
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463864.5580227-CDS-Ecto-sp13_S_contig62061:205..3581681463864.5580227-CDS-Ecto-sp13_S_contig62061:205..358Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig62061 206..358 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig62061.16927.1prot_Ecto-sp13_S_contig62061.16927.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig62061 206..358 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig62061.16927.1

>prot_Ecto-sp13_S_contig62061.16927.1 ID=prot_Ecto-sp13_S_contig62061.16927.1|Name=mRNA_Ecto-sp13_S_contig62061.16927.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
MESATSLMARTTTLTTTAPSTKLGTRTMTATARMGRTAAAATTLTIASHA
*
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mRNA from alignment at Ecto-sp13_S_contig62061:206..358-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig62061.16927.1 ID=mRNA_Ecto-sp13_S_contig62061.16927.1|Name=mRNA_Ecto-sp13_S_contig62061.16927.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62061:206..358- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGTCCGCGACGTCCTTGATGGCTCGGACGACCACATTGACGACAAC
CGCCCCATCCACCAAGTTGGGGACACGGACGATGACGGCGACGGCGAGGA
TGGGGCGAACGGCTGCAGCCGCGACGACTCTGACGATAGCGTCGCATGCC
TAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig62061:206..358-

>mRNA_Ecto-sp13_S_contig62061.16927.1 ID=mRNA_Ecto-sp13_S_contig62061.16927.1|Name=mRNA_Ecto-sp13_S_contig62061.16927.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62061:206..358- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGTCCGCGACGTCCTTGATGGCTCGGACGACCACATTGACGACAAC
CGCCCCATCCACCAAGTTGGGGACACGGACGATGACGGCGACGGCGAGGA
TGGGGCGAACGGCTGCAGCCGCGACGACTCTGACGATAGCGTCGCATGCC
TAG
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