mRNA_Ecto-sp13_S_contig6164.16862.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6164.16862.1
Unique NamemRNA_Ecto-sp13_S_contig6164.16862.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6164.16862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6164contigEcto-sp13_S_contig6164:4669..6165 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size813
Hectar predicted targeting categorysignal peptide
Exons4
Cds size342
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6164.16862.1prot_Ecto-sp13_S_contig6164.16862.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6164 5142..6142 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463858.891026-UTR-Ecto-sp13_S_contig6164:4668..47601681463858.891026-UTR-Ecto-sp13_S_contig6164:4668..4760Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6164 4669..4760 -
1681463858.9042025-UTR-Ecto-sp13_S_contig6164:4785..51411681463858.9042025-UTR-Ecto-sp13_S_contig6164:4785..5141Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6164 4786..5141 -
1681463858.9599352-UTR-Ecto-sp13_S_contig6164:6142..61651681463858.9599352-UTR-Ecto-sp13_S_contig6164:6142..6165Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6164 6143..6165 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463858.9144554-CDS-Ecto-sp13_S_contig6164:5141..52701681463858.9144554-CDS-Ecto-sp13_S_contig6164:5141..5270Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6164 5142..5270 -
1681463858.9285722-CDS-Ecto-sp13_S_contig6164:5505..56061681463858.9285722-CDS-Ecto-sp13_S_contig6164:5505..5606Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6164 5506..5606 -
1681463858.9443126-CDS-Ecto-sp13_S_contig6164:6030..61421681463858.9443126-CDS-Ecto-sp13_S_contig6164:6030..6142Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6164 6031..6142 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6164.16862.1

>prot_Ecto-sp13_S_contig6164.16862.1 ID=prot_Ecto-sp13_S_contig6164.16862.1|Name=mRNA_Ecto-sp13_S_contig6164.16862.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=114bp
MDFLVTSIAAALTVASSTATRSSMPAQTKSGNIGLSTGGVCSPGDVGCHG
DTDEAILYAFEYNFDIFVLVVTLRTLWFAGILLGVTATAVLVWVRERRLS
FLAGEYFQFTVLL*
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mRNA from alignment at Ecto-sp13_S_contig6164:4669..6165-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6164.16862.1 ID=mRNA_Ecto-sp13_S_contig6164.16862.1|Name=mRNA_Ecto-sp13_S_contig6164.16862.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1497bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6164:4669..6165- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGCAGTCTTCGCTTTGGCGGCATGGATTTTCTGGTGACTAGCATTGCG
GCGGCTCTCACGGTTGCTTCATCTACCGCCACGAGAAGCAGCATGCCGGC
GCAGACTAAGAGCGGCAACATTGGTCTCAGCACAGGTACGTTTAGGTCCC
TCCAGGCAGATTGAAGCTGTTGATAAGTCAATTTTATCTTGTCTTCGTTC
CATATTCGTCTCGGAGCCCAGCATCTGGTCGTGATGCGAAAGGTACTTCA
TTGAGGCCGACAAATACGTTACTGATCGTCGCCTTCGTCGAACCTTTGTG
TCGCTGCTGTCTAATCCTTCGGTAGAAGAACGAGGTCCCCGATTTCCGAA
GCGCTCTGCAGTGGCAAGGAGCATTGCCACGGCCGGTTGTGAACGTTGTT
GACACTCAAGGCAGTTCTACAAAAAAGAGCATCGAGTGGCACCCCCCGCA
TGATACTCCACGCTCGAGGAGCGGGGGTCTGATGAAATGCGAGTGCCTGT
AGACCAAACCGTTGAGTGAGGTATCGTGGTCTAATTGAACTCGATGATGA
CGCCGCCAGGCGGCGTATGCAGTCCCGGGGATGTCGGCTGCCATGGAGAC
ACGGACGAGGCCATACTCTACGCGTTCGAGTACAACTTCGACATCTTCGT
GCTGGTTGTGGTGAGAGCTCGTCGAATGTGGCGTCCTCGCGCGACCCAGC
CAATGAAACCTTACCGTTTTTGCTGACCTTATCCCATCGTCCACCAGGAC
CTCACTGTGCTTTGTTCGCGCTGTTACACGTTCGTTGGTTTCCATGATCA
TGAATGTTTAGTTTTAACAGCCGTTGTTGACACCGGCCCGAGCAAAAAAA
TCAATTCCCGCTCCCTTTCGCGTGTTCCGTCGCGTTTTCAATCAGACCTT
GCGCACGCTGTGGTTCGCCGGGATCTTGTTGGGAGTGACTGCAACGGCCG
TCCTCGTCTGGGTCAGGGAAAGGAGACTTTCTTTCCTTGCAGGAGAGTAT
TTTCAGTTCACCGTACTGCTGTAGTCTTGGCATTACAGTCAAAACACACG
TAGCTGGAGTAGGACGGATTGTAGCCCTGCCAACCAGTGATGCTGACGTC
AACGAACACCCTCCGACTGGCACAAGATGTGGCATCATTGACGAAACGTG
GAATATTTTGCTCAGTTTCGTTTGAGTCCGGGCATTGTGGAGCTAAATCG
TGTGCTGCCCTATGGCTCAAAAGTTTTGGGATACAGCTGATTGCTCGTCG
ACTTTGCACTCACGACAGCCGACTGTGGCACAGGAGTGACGTAGAAGGCA
CGGAAGCTAAGCCATGCAAATACGAACAATAGATCTCCTGCGATCCTAGG
GGGAGTGTACAAGTAGAGACCGGTCGATGAGTTACGGCTTGACCAGAACA
CAAAGTTTGTCTCTTGTGGCGAAGAGGCGGAAGCATGCTAGCGTAACGTA
GCAGGGGCCAGGAACTCGTGGTTTAAAAAGGTTGGAAGAAAGTGAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6164:4669..6165-

>mRNA_Ecto-sp13_S_contig6164.16862.1 ID=mRNA_Ecto-sp13_S_contig6164.16862.1|Name=mRNA_Ecto-sp13_S_contig6164.16862.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6164:4669..6165- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATTTTCTGGTGACTAGCATTGCGGCGGCTCTCACGGTTGCTTCATC
TACCGCCACGAGAAGCAGCATGCCGGCGCAGACTAAGAGCGGCAACATTG
GTCTCAGCACAGGCGGCGTATGCAGTCCCGGGGATGTCGGCTGCCATGGA
GACACGGACGAGGCCATACTCTACGCGTTCGAGTACAACTTCGACATCTT
CGTGCTGGTTGTGACCTTGCGCACGCTGTGGTTCGCCGGGATCTTGTTGG
GAGTGACTGCAACGGCCGTCCTCGTCTGGGTCAGGGAAAGGAGACTTTCT
TTCCTTGCAGGAGAGTATTTTCAGTTCACCGTACTGCTGTAG
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