mRNA_Ecto-sp13_S_contig616.16856.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig616.16856.1
Unique NamemRNA_Ecto-sp13_S_contig616.16856.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig616.16856.1 vs. uniprot
Match: D7FL35_ECTSI (Similar to Rho GTPase activating protein 24 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL35_ECTSI)

HSP 1 Score: 266 bits (680), Expect = 2.240e-77
Identity = 246/305 (80.66%), Postives = 248/305 (81.31%), Query Frame = 1 
Query:    1 LSRPRSSSSIPSPNQLAALEREVEICSARVARTAGYVRFSVAAKAGGSXXXXXXXXXXXXXXFAAVDEXXXXXXXXXXXXXXXXXXXGPDGGGSADATERAIDRDVEKTRATDSPXXXXXXXXXXXXXXXXXXXXXXXEVVACRKSGA-TGRAIDKNGSAPADHPARLRRATTDKTVATAKSAWEKAGEGNGAAAGGVKRRGAGKAAQHLSTSARISPGIQALMANYDAAASYSRPVTPGMKTPLSTTPAKPAGSAAPSKTAACGGGXXXXXXXTSAGAASPEDCESFPAAAAKDAATPTSAVPQ 912
            LSRP SSSSIPSPNQLAALEREVEICSARVARTAGYVRFSVAAKAGGSXXXXXXXXXXXXXX      XXXXXXXXXXXXXXXXXXX                            XXXXXXXXXXXXXXXXXXXXXX EVVA  KSGA TGRA DKNGSAPADHPA LRRA T KTVA AKSAWEKAGEG+ AAAGGVK RGAGK AQHLST ARISPGIQALMANYDAAA   RPVTPGMKTPLSTTPAKPAGSAAPSKTAACGG XXXXXX TSAGAASP+D E FPA AAKDAATPT AVPQ
Sbjct:  682 LSRPWSSSSIPSPNQLAALEREVEICSARVARTAGYVRFSVAAKAGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREVVAGGKSGAATGRATDKNGSAPADHPAPLRRAATGKTVAAAKSAWEKAGEGSAAAAGGVKSRGAGKVAQHLSTLARISPGIQALMANYDAAA---RPVTPGMKTPLSTTPAKPAGSAAPSKTAACGGXXXXXXXATSAGAASPDDREVFPAGAAKDAATPTPAVPQ 981
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BLAST of mRNA_Ecto-sp13_S_contig616.16856.1 vs. uniprot
Match: A0A6H5JEV0_9PHAE (Rho-GAP domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEV0_9PHAE)

HSP 1 Score: 229 bits (585), Expect = 1.550e-64
Identity = 144/167 (86.23%), Postives = 147/167 (88.02%), Query Frame = 1 
Query:  415 EVVACRKSGA-TGRAIDKNGSAPADHPARLRRATTDKTVATAKSAWEKAGEGNGAAAGGVKRRGAGKAAQHLSTSARISPGIQALMANYDAAASYSRPVTPGMKTPLSTTPAKPAGSAAPSKTAACGGGXXXXXXXTSAGAASPEDCESFPAAAAKDAATPTSAVPQ 912
            EVVACRKSGA TGRA DKNG APADHPA LRRA+T K+VA  KSAWEKAGEGNGAAAGGVK RGAGKAAQHLSTSARISPGIQALMANYDAAASYSRPVTPG+KT LSTTPAKPAGSAAPSKT      XXXXXXX SAGAASPED E F A AAKDAATPTSAVPQ
Sbjct:  761 EVVACRKSGAATGRATDKNGPAPADHPAPLRRASTGKSVAAVKSAWEKAGEGNGAAAGGVKSRGAGKAAQHLSTSARISPGIQALMANYDAAASYSRPVTPGIKTTLSTTPAKPAGSAAPSKTXXXXXXXXXXXXXXSAGAASPEDREVFTAVAAKDAATPTSAVPQ 927
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig616.16856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FL35_ECTSI2.240e-7780.66Similar to Rho GTPase activating protein 24 n=1 Ta... [more]
A0A6H5JEV0_9PHAE1.550e-6486.23Rho-GAP domain-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig616contigEcto-sp13_S_contig616:18190..19103 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score273.5
Seed ortholog evalue1.2e-70
Seed eggNOG ortholog2880.D7FL35
Model size915
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0043087,GO:0044424,GO:0044464,GO:0050790,GO:0051336,GO:0065007,GO:0065009
Exons1
EggNOG free text desc.GTPase activator activity
EggNOG OGsKOG4270@1,KOG4270@2759
Cds size912
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463858.2953463-CDS-Ecto-sp13_S_contig616:18189..191011681463858.2953463-CDS-Ecto-sp13_S_contig616:18189..19101Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig616 18190..19101 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig616.16856.1prot_Ecto-sp13_S_contig616.16856.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig616 18190..19101 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig616.16856.1

>prot_Ecto-sp13_S_contig616.16856.1 ID=prot_Ecto-sp13_S_contig616.16856.1|Name=mRNA_Ecto-sp13_S_contig616.16856.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=304bp
LSRPRSSSSIPSPNQLAALEREVEICSARVARTAGYVRFSVAAKAGGSGG
GSGSGSRSGSSVFAAVDEDEEEMDRPPSPPSSGSTGCGPDGGGSADATER
AIDRDVEKTRATDSPTPHNVNVNGSGSGSGNGSGSGNGEVVACRKSGATG
RAIDKNGSAPADHPARLRRATTDKTVATAKSAWEKAGEGNGAAAGGVKRR
GAGKAAQHLSTSARISPGIQALMANYDAAASYSRPVTPGMKTPLSTTPAK
PAGSAAPSKTAACGGGGSGGRGATSAGAASPEDCESFPAAAAKDAATPTS
AVPQ
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mRNA from alignment at Ecto-sp13_S_contig616:18190..19103+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig616.16856.1 ID=mRNA_Ecto-sp13_S_contig616.16856.1|Name=mRNA_Ecto-sp13_S_contig616.16856.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=914bp|location=Sequence derived from alignment at Ecto-sp13_S_contig616:18190..19103+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGTCACGCCCACGGAGCTCTTCCAGCATACCTAGCCCGAATCAGCTTGC
GGCCCTGGAGCGCGAGGTGGAGATTTGCTCTGCCCGCGTCGCCCGTACAG
CCGGGTATGTCCGATTCAGCGTCGCCGCCAAGGCGGGCGGAAGCGGCGGC
GGTAGCGGCAGCGGCAGCCGCAGCGGCAGTAGCGTGTTTGCCGCGGTTGA
CGAGGACGAGGAGGAGATGGACAGGCCGCCTTCACCGCCCTCTAGCGGCT
CCACGGGCTGTGGTCCGGATGGCGGCGGTAGTGCTGATGCTACAGAGAGA
GCGATAGACCGAGATGTCGAGAAGACGAGGGCGACGGATTCGCCCACGCC
TCACAACGTCAACGTTAACGGCAGCGGCAGCGGCAGCGGCAACGGCAGCG
GCAGCGGTAACGGCGAGGTGGTCGCCTGCAGGAAGAGCGGGGCAACGGGA
AGGGCGATCGACAAGAACGGTTCGGCGCCCGCGGATCACCCGGCGCGACT
CCGACGCGCTACCACCGATAAGACCGTCGCCACGGCGAAATCGGCGTGGG
AGAAGGCAGGAGAAGGAAACGGCGCCGCTGCTGGTGGTGTCAAGAGACGG
GGAGCTGGGAAAGCGGCGCAGCACCTGTCTACATCGGCGAGGATCTCGCC
CGGGATCCAGGCGCTGATGGCCAACTACGATGCCGCCGCTAGTTACTCTA
GACCGGTCACCCCGGGAATGAAAACGCCGCTGTCGACCACACCTGCAAAG
CCCGCTGGATCTGCAGCTCCTTCTAAAACTGCCGCCTGCGGCGGCGGCGG
CAGCGGCGGGCGGGGTGCGACAAGCGCAGGAGCAGCATCACCCGAGGACT
GTGAATCGTTTCCGGCTGCGGCTGCAAAGGATGCGGCGACGCCCACGTCG
GCGGTGCCCCAAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig616:18190..19103+

>mRNA_Ecto-sp13_S_contig616.16856.1 ID=mRNA_Ecto-sp13_S_contig616.16856.1|Name=mRNA_Ecto-sp13_S_contig616.16856.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=912bp|location=Sequence derived from alignment at Ecto-sp13_S_contig616:18190..19103+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGTCACGCCCACGGAGCTCTTCCAGCATACCTAGCCCGAATCAGCTTGC
GGCCCTGGAGCGCGAGGTGGAGATTTGCTCTGCCCGCGTCGCCCGTACAG
CCGGGTATGTCCGATTCAGCGTCGCCGCCAAGGCGGGCGGAAGCGGCGGC
GGTAGCGGCAGCGGCAGCCGCAGCGGCAGTAGCGTGTTTGCCGCGGTTGA
CGAGGACGAGGAGGAGATGGACAGGCCGCCTTCACCGCCCTCTAGCGGCT
CCACGGGCTGTGGTCCGGATGGCGGCGGTAGTGCTGATGCTACAGAGAGA
GCGATAGACCGAGATGTCGAGAAGACGAGGGCGACGGATTCGCCCACGCC
TCACAACGTCAACGTTAACGGCAGCGGCAGCGGCAGCGGCAACGGCAGCG
GCAGCGGTAACGGCGAGGTGGTCGCCTGCAGGAAGAGCGGGGCAACGGGA
AGGGCGATCGACAAGAACGGTTCGGCGCCCGCGGATCACCCGGCGCGACT
CCGACGCGCTACCACCGATAAGACCGTCGCCACGGCGAAATCGGCGTGGG
AGAAGGCAGGAGAAGGAAACGGCGCCGCTGCTGGTGGTGTCAAGAGACGG
GGAGCTGGGAAAGCGGCGCAGCACCTGTCTACATCGGCGAGGATCTCGCC
CGGGATCCAGGCGCTGATGGCCAACTACGATGCCGCCGCTAGTTACTCTA
GACCGGTCACCCCGGGAATGAAAACGCCGCTGTCGACCACACCTGCAAAG
CCCGCTGGATCTGCAGCTCCTTCTAAAACTGCCGCCTGCGGCGGCGGCGG
CAGCGGCGGGCGGGGTGCGACAAGCGCAGGAGCAGCATCACCCGAGGACT
GTGAATCGTTTCCGGCTGCGGCTGCAAAGGATGCGGCGACGCCCACGTCG
GCGGTGCCCCAA
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