prot_Ecto-sp13_S_contig6125.16811.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6125.16811.1
Unique Nameprot_Ecto-sp13_S_contig6125.16811.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length510
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6125.16811.1 vs. uniprot
Match: D8LDM1_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDM1_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 2.280e-29
Identity = 166/274 (60.58%), Postives = 166/274 (60.58%), Query Frame = 0 
Query:   16 PPGPSEYNTPSIPADGSGGNYGGDAYGGGVGGGYDDYPAERADGXXXXXXXXXXXXXXXXXXXAQNRVASGGGGGGEYNDXXXXXXXXXXXXXXXXDHXXYAANXAGRDAAYGAEYDGVARGXKTXXXXXXXXXXXXXXGDGYRHSGGAYRGGRHSGXXXXXXXXXXDQYAGGADQGRSGGQAATGYGDSRTGDNGGYPAAGGNGYQAETEGSRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----RTGXXXXXPSQAADSGYGTA 284
            PPGPSEYNTPSIPADGSGGNYGGDAYG     GYDDYPAERADGXXXXXXXXXXXXXXXXXXXAQNR ASG     EYND  X XXX         DH  YAAN AGRDAAYGAE       X  XXXXXXXXXXXXXX                  XXXXXXXXXX                 TGYGDSRTGDNGGYPAA GNGYQ ETEGSRGGXXXXXXX                               RTG     PSQAADSGYGTA
Sbjct:  604 PPGPSEYNTPSIPADGSGGNYGGDAYGXXXXXGYDDYPAERADGXXXXXXXXXXXXXXXXXXXAQNRAASGXXXXXEYNDGGXQXXXYGGAGSGA-DHGGYAANGAGRDAAYGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGYGDSRTGDNGGYPAAVGNGYQGETEGSRGGXXXXXXXYGQQGDGGSYRAEGAASSGYDQGYSGNPNNGRTGQQAGGPSQAADSGYGTA 876
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6125.16811.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDM1_ECTSI2.280e-2960.58RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01228EGGSHELLcoord: 172..187
score: 39.84
coord: 86..97
score: 48.96
coord: 202..212
score: 37.5
coord: 230..248
score: 42.11
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..10
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 15..509
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..14
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..15
score: 0.571

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6125contigEcto-sp13_S_contig6125:6623..8152 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6125.16811.1mRNA_Ecto-sp13_S_contig6125.16811.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6125 6623..8152 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6125.16811.1 ID=prot_Ecto-sp13_S_contig6125.16811.1|Name=mRNA_Ecto-sp13_S_contig6125.16811.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=510bp
MLFFLLVLCIGERRGPPGPSEYNTPSIPADGSGGNYGGDAYGGGVGGGYD
DYPAERADGAGGYRDSYNNGAADSRGGYAQNRVASGGGGGGEYNDGGGQG
GGYDRGAGSGADHGGYAANGAGRDAAYGAEYDGVARGGKTGGYDDGYGGA
AADGGDGYRHSGGAYRGGRHSGGGGGTSSGNNDQYAGGADQGRSGGQAAT
GYGDSRTGDNGGYPAAGGNGYQAETEGSRGGGGYGQQGDGGSYRAEGAAS
SGYDQGYSGNTNNGRTGQQGGGPSQAADSGYGTAGGASGSGYDAGPVDSR
YDNGRNGASGGDGYGATGGDTYQTGGTYAQDASSRTPQGSLYGSQQQQQQ
QRQGYDAHGKTGAGGRPQSGDAGTKGGGGYAENNGGGDYNSSAAAGGGGQ
YRGGYADQQSSGGAGQQSSGYGGGQADGAYDAPTAGGAAGGSSGYAAQGS
YAQGGAEGDAEFWARGGGAGGSGGGYTDGGPHAASTGQYAAPETPGRGGG
GGGQGSYAW*
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