prot_Ecto-sp13_S_contig6105.16784.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6105.16784.1
Unique Nameprot_Ecto-sp13_S_contig6105.16784.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length407
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6105.16784.1 vs. uniprot
Match: A0A6H5JMQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMQ8_9PHAE)

HSP 1 Score: 506 bits (1302), Expect = 7.940e-176
Identity = 333/389 (85.60%), Postives = 342/389 (87.92%), Query Frame = 0 
Query:    1 MSGSSGGGSSDHRGTPSKGGRSDTNGTVSHATLQQAGVYSGSYAVPGVFGGQTLTFQYGGGSAPRPPSVSAPTAAPSQPPQAAGSINSTANHMVLDNDPSLHHHSASTSVAWSGATIASPAVLFGQQESVAATSALQFAQLGQELLPQQQLHGCGGIGSSASPAALVPPPQLAGIHPTASLTTTTSVDTAVSTHVVDGGVAGRGAMTSVLQQPTPPPLSDIGGAVVPLPLANSGPTFTFNGXXXXXXGIDPLTRPVFQRGFNPTALQNQQQLAPVFTTPSSTVFPLSAFVGEQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXPMVMPVIQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGTPAASITAAFAPFPPQSFLQLNPGR 389
            MS SSGGGSSDHRGTPSKGGRSDTNGTVSH T QQAGVYSGSYAVPGVFGGQT+T Q+GGGSAPRPPSVSAP AAPSQPPQAAGSI STANHMVLDNDPSL H  A TSVAW GATIASPAVLFGQQES+AATS LQFAQLGQ+LLPQQQLHG  GIGSS +PAALVPP QLAGIHPTASLT+TTSVDTAVSTHVVD GVAG GA+TSVLQQ  PPPLSDIGGAVVPLP+ANSGPT+TFNG  XXXX  DPLTRPVFQ GFNPTALQNQQQ APVFTTPSST FPLSAFVGEQQ XXXXXXXXXXXXXXXXXXXXXXXXXXXPMVMPVIQQ XXXXXXXXXXXXX                 PGTPAASITAAFAPFPPQSFLQLNP R
Sbjct:    1 MSSSSGGGSSDHRGTPSKGGRSDTNGTVSHVTSQQAGVYSGSYAVPGVFGGQTVTSQHGGGSAPRPPSVSAPPAAPSQPPQAAGSIKSTANHMVLDNDPSLDHPPAVTSVAWGGATIASPAVLFGQQESIAATSTLQFAQLGQQLLPQQQLHGFRGIGSSVAPAALVPPAQLAGIHPTASLTSTTSVDTAVSTHVVDCGVAGGGAVTSVLQQHPPPPLSDIGGAVVPLPVANSGPTYTFNGGGXXXXVSDPLTRPVFQPGFNPTALQNQQQPAPVFTTPSSTGFPLSAFVGEQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXPMVMPVIQQQXXXXXXXXXXXXX-----------------PGTPAASITAAFAPFPPQSFLQLNPVR 372
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BLAST of mRNA_Ecto-sp13_S_contig6105.16784.1 vs. uniprot
Match: D7G2K6_ECTSI (P4Hc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K6_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 6.600e-20
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 0 
Query:  129 SVAATSALQFAQLGQELLPQQQLHGCGGIGSSASPAALVPPPQLAGIHPTASLTTTTSVDT 189
            SV ATSALQFAQLGQ+LLP QQLHG GGIGSS +PAALVPP QLAGIHPTASLTT TSVDT
Sbjct:   28 SVPATSALQFAQLGQQLLPHQQLHGFGGIGSSVAPAALVPPAQLAGIHPTASLTTATSVDT 88
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6105.16784.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JMQ8_9PHAE7.940e-17685.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2K6_ECTSI6.600e-2086.89P4Hc domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 328..361

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6105contigEcto-sp13_S_contig6105:5149..7949 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6105.16784.1mRNA_Ecto-sp13_S_contig6105.16784.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6105 5056..8532 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6105.16784.1 ID=prot_Ecto-sp13_S_contig6105.16784.1|Name=mRNA_Ecto-sp13_S_contig6105.16784.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=407bp
MSGSSGGGSSDHRGTPSKGGRSDTNGTVSHATLQQAGVYSGSYAVPGVFG
GQTLTFQYGGGSAPRPPSVSAPTAAPSQPPQAAGSINSTANHMVLDNDPS
LHHHSASTSVAWSGATIASPAVLFGQQESVAATSALQFAQLGQELLPQQQ
LHGCGGIGSSASPAALVPPPQLAGIHPTASLTTTTSVDTAVSTHVVDGGV
AGRGAMTSVLQQPTPPPLSDIGGAVVPLPLANSGPTFTFNGGGGGGGGID
PLTRPVFQRGFNPTALQNQQQLAPVFTTPSSTVFPLSAFVGEQQQQQKAA
PVFTIPPSTGLAPSAFGGEQQQPMVMPVIQQQQQQQQQQQQQQQHEQQQQ
QQQQHEQQQQQQPGTPAASITAAFAPFPPQSFLQLNPGRACTTGVGSEFD
ISTTSG*
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