mRNA_Ecto-sp13_S_contig61.16768.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig61.16768.1
Unique NamemRNA_Ecto-sp13_S_contig61.16768.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig61.16768.1 vs. uniprot
Match: A0A6H5L4S8_9PHAE (SpoU_sub_bind domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4S8_9PHAE)

HSP 1 Score: 634 bits (1635), Expect = 7.300e-224
Identity = 342/357 (95.80%), Postives = 345/357 (96.64%), Query Frame = 2
Query:  176 MSVAFNSGPSAAPLARMIAAFVASRAGRPPSAGSRDGGGGGIRDRGIRAAAMSSIPNGLWRDRGGTLDITSAQNPKVKLMRSFHKRRTRDDGGKILAEGHRLVCDLIEGGLTPTLVIVSPEALRASPGPRLQAALETLSADIVAVAPAEVVQRCCDTVTSQGVVALVERPVLPLPPTMQTVLICDGIQDPGNLGTLVRTAAGLGADAVVLTGSCVDYWAPKTVRASMGASFRLPSLRLESWQEVVELMRARGIRMYAADGGARLSHFDADWTSPSALVVGAEARGLSDAARLELESGGIAGVSVPLGGGVESLNAAVAGAIVLGEAQRQRLVAERHVGVRGGRGATGDGELSGAVSQ 1246
            MSVAFNSGPSAAPLARMIAAFVASRAGRPPSA SRDG GG IRDRGIRAAAMSS+P GLWRDRGGTLDITSA+NPKVKLMRSFHKRRTRDDGGKILAEGHRLVCDLIEGGLTPTLVI    ALRASPGPRLQAALETLSAD+VAVAPAEVVQRCCDTVTSQGVVALVERPVLPLPPTMQTVLICDGIQDPGNLGTLVRTAAGLGADAVVLTGSCVDYWAPKTVRASMGASFRLPSLRLESWQEVVELMRARGIRMYAADGGARLSHFDADWTSPSALVVGAEARGLSDAARLELESGGIAGVSVPL GGVESLNAAVAGAIVLGEAQRQRLVAERHVGVR G G TGDGELSGAVSQ
Sbjct:    1 MSVAFNSGPSAAPLARMIAAFVASRAGRPPSASSRDGRGG-IRDRGIRAAAMSSLPYGLWRDRGGTLDITSARNPKVKLMRSFHKRRTRDDGGKILAEGHRLVCDLIEGGLTPTLVI----ALRASPGPRLQAALETLSADVVAVAPAEVVQRCCDTVTSQGVVALVERPVLPLPPTMQTVLICDGIQDPGNLGTLVRTAAGLGADAVVLTGSCVDYWAPKTVRASMGASFRLPSLRLESWQEVVELMRARGIRMYAADGGARLSHFDADWTSPSALVVGAEARGLSDAARLELESGGIAGVSVPLEGGVESLNAAVAGAIVLGEAQRQRLVAERHVGVRWGGGMTGDGELSGAVSQ 352          
BLAST of mRNA_Ecto-sp13_S_contig61.16768.1 vs. uniprot
Match: A0A835Z4A7_9STRA (tRNA/rRNA methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4A7_9STRA)

HSP 1 Score: 313 bits (803), Expect = 3.150e-99
Identity = 161/274 (58.76%), Postives = 209/274 (76.28%), Query Frame = 2
Query:  350 LWRDRGG--TLDITSAQNPKVKLMRSFHKRRTRDDGGKILAEGHRLVCDLIEGGLTPTLVIVSPEALRASPGPRLQAALETLSADIVAVAPAEVVQRCCDTVTSQGVVALVERPVLPLPPTMQTVLICDGIQDPGNLGTLVRTAAGLGADAVVLTGSCVDYWAPKTVRASMGASFRLPSLRLESWQEVVELMRARGIRMYAADGGARLSHFDADWTSPSALVVGAEARGLSDAARLELESGGIAGVSVPLGGGVESLNAAVAGAIVLGEAQRQR 1165
            LWR  G    LDITS  NP++K +   HKR++RD  G++L EG RLV D ++ GL+P LV+VSPEAL +  G  L A L+ LS+D+V +A  + V R CDTV+ QGVVA+V RP+LPLP T++  L+ DG+ DPGN+GT+VRTAA LG DAVV+TG+CVD W+PK +RASMGA+FR+PS+   +W+E  EL++ARG+ +YAADGGA  +H++  W+ PSALVVG+EA GLS AAR +L+ G I G+ +PL  GVESLNAAVAGAIVLGEAQRQR
Sbjct:    9 LWRPPGSGDLLDITSPTNPRIKTL---HKRKSRDSEGRVLVEGCRLVTDALKAGLSPDLVLVSPEALASPGGSALSALLQRLSSDVVCLASGDCVARACDTVSPQGVVAVVARPLLPLPETVRLALVLDGVSDPGNMGTMVRTAAALGVDAVVMTGACVDLWSPKALRASMGAAFRVPSVATGTWRETRELLQARGLALYAADGGAATAHWEVPWSKPSALVVGSEAEGLSQAAREDLDRGVITGIRIPLSNGVESLNAAVAGAIVLGEAQRQR 279          
BLAST of mRNA_Ecto-sp13_S_contig61.16768.1 vs. uniprot
Match: A0A8J5X903_DIALT (SpoU_sub_bind domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X903_DIALT)

HSP 1 Score: 210 bits (535), Expect = 1.260e-59
Identity = 116/265 (43.77%), Postives = 163/265 (61.51%), Query Frame = 2
Query:  380 ITSAQNPKVKLMRSFHKRRTRDDGGKILAEGHRLVCDLIEGGLTPTLVIVSPEALRASPGPRLQAALETLSADIVAVAPAEVVQRCCDTVTSQGVVALVERPVLP--LPPTMQTVLICDGIQDPGNLGTLVRTAAGLGADAVVLTGSCVDYWAPKTVRASMGASFRLPSLRLESWQEVVELMRARGIRMYAADGGARLSHFDA-DWTSPSALVVGAEARGLSDAARLELESGGIAGVSVPLGGGVESLNAAVAGAIVLGEAQRQR 1165
            ITS +NP VK +R    RR R+  G +L EG RLV D ++ G     V+V+   L   PG  LQ  L  L A +V++A    +   C TV+ QG+VA V  P     LP     VL+ D + DPGN+GTLVR AAG G DAVV  G+C D W+PK +R++MG +FRLP +  + W ++   ++  G+R+ AADGG   S + A DW +P A+V+G+EA GLS+A R +L +G +  V +P+  G++SLNAA+AG ++L E  RQR
Sbjct:   15 ITSGKNPVVKALRRLESRRHRERDGLLLLEGLRLVTDALDAGFCAETVLVAEALLAQQPG--LQRVLAALPAGVVSLADEAALAAACTTVSPQGIVAAVRMPERTGALPDAASLVLVLDNLSDPGNVGTLVRGAAGFGCDAVVALGACADAWSPKALRSAMGGTFRLPIVPAQEWAQLRAQLQRAGLRVLAADGGVAASDYAAVDWRAPLAVVIGSEATGLSEAVRADLAAGSVCAVGIPMAAGLDSLNAAMAGTVLLSECARQR 277          
BLAST of mRNA_Ecto-sp13_S_contig61.16768.1 vs. uniprot
Match: R1BHS4_EMIHU (RNA methyltransferase n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BHS4_EMIHU)

HSP 1 Score: 207 bits (528), Expect = 6.130e-59
Identity = 117/263 (44.49%), Postives = 155/263 (58.94%), Query Frame = 2
Query:  380 ITSAQNPKVKLMRSFHKRRTRDDGGKILAEGHRLVCDLIEGGLTPTLVIVSPEALRASPGPRLQAALETLSADIVAVAPAEVVQRCCDTVTSQGVVALVERPVLPLPPTMQTVLICDGIQDPGNLGTLVRTAAGLGADAVVLTGSCVDYWAPKTVRASMGASFRLPSLRLESWQEVVELMRARGIRMYAADGGARLSHFDADWTSPSALVVGAEARGLSDAARLELESGGIAGVSVPLGGGVESLNAAVAGAIVLGEAQRQRL 1168
            + S  NP++KL +  H RR R+  G IL EG RL+ D ++ GL+   V+VS E LR     RL   L  + A+I A   A + +   DT T  GV+AL ++P+L LPP+   VL+CD I DPGNLGTL+R +A  G D  +L   C D W PK +RA MGA FR+P ++++SW      +   G  + AAD G   +H+D DW   SALVVG+EA G+S     +           P  G +ESLNAAVAGAIVL EAQRQR+
Sbjct:    6 LNSPNNPRLKLAKRLHARRQREKTGLILLEGQRLIADALDAGLSADFVLVSDEQLRDGALDRL---LARVPAEIAASTTAPLFRDVSDTTTPAGVLALFQKPILTLPPSPSLVLVCDSISDPGNLGTLLRASAAAGVDGCLLMAGCADPWGPKALRAGMGAQFRVPMMQVDSWAGAAASLVEWGCAIRAADAGGTSAHYDCDWRDASALVVGSEAHGISREVLAD-----------PRAGDLESLNAAVAGAIVLHEAQRQRM 254          
BLAST of mRNA_Ecto-sp13_S_contig61.16768.1 vs. uniprot
Match: R7QT73_CHOCR (SpoU_sub_bind domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QT73_CHOCR)

HSP 1 Score: 201 bits (511), Expect = 5.580e-56
Identity = 126/281 (44.84%), Postives = 170/281 (60.50%), Query Frame = 2
Query:  341 PNGLWRDRGGTLDITSAQNPKVKLMRSFHKRRTRDDGGKILAEGHRLVCDLIEGGLTPTLVIVSPEALRASPGPRLQAALETLSADI--VAVAP---AEVVQRC-CDTVTSQGVVALVERPVLPLPPTMQTVLICDGIQDPGNLGTLVRTAAGLGADAVVLTGSCVDYWAPKTVRASMGASFRLPSLRLESWQEVVELMRARGIRMYAADGGARLSHFDADWTSPSALVVGAEARGLSDAARLELESGGIAGVSVPLGGGVESLNAAVAGAIVLGEAQRQR 1165
            P    R    +L++TSA+NP +KL RS  +RR RD    IL EG RL+ D +     P  +  S + LR S      AA+  L AD+     AP   AE + R  C+TV+ QGVVA++ERP LPLP +    L+CD ++DPGN+GTL+R+AAG G DAV++T  C D W  K +RA MGA FRLP    +SW EV++++   G  +  ADGG    +   DW  P+A+VVG EA G  + A  E + G + G+  PL  G+ESLNAAVAG++VL E +RQR
Sbjct:   22 PTRALRTSRASLELTSARNPHLKLARSLLRRRHRDKNNLILLEGQRLIEDALSASFAPHQLFYSDKLLRRS------AAMGALLADVRRSGCAPMLVAEPIMRSLCNTVSPQGVVAVLERPALPLPDSGTLALVCDEVRDPGNVGTLLRSAAGAGVDAVLMTHGCADPWGLKVLRAGMGAHFRLPVQVDQSWDEVMQVVHKWGCEVSVADGGGE-DYAKVDWCGPAAIVVGGEANGPGERAFQEAQ-GRVVGI--PLCSGMESLNAAVAGSVVLFEVRRQR 292          
BLAST of mRNA_Ecto-sp13_S_contig61.16768.1 vs. uniprot
Match: A0A7S2B686_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2B686_9EUKA)

HSP 1 Score: 198 bits (504), Expect = 1.140e-55
Identity = 116/241 (48.13%), Postives = 148/241 (61.41%), Query Frame = 2
Query:  467 EGHRLVCDLIEGGLTPTLVIVSPEALRASPGPRLQAALETLSADIVAVAPAEVVQRCCDTVTSQGVVALVERPVLPLPPTMQTVLICDGIQDPGNLGTLVRTAAGLGADAVVLTGSCVDYWAPKTVRASMGASFRLPSLRLESWQEVVELMRARGIRMYAADGGARLSHFDADWTSPSALVVGAEARGLSDAARLELESGGIAGVSVPLGGGV------ESLNAAVAGAIVLGEAQRQRLV 1171
            EGHRLV D +  GL P  V++   AL +S G RL  AL  L  D V   PA +V++  DT T QGV+A++    LPLPP    VL+CDGI DPGNLGTL+R+AAG G DAV+L   C D W  KT+R+ MGA FR+P   + +W +  +L+        AAD G  L+H + DW   +AL+VG+EA GLSDA R +     +    VPL  G+      ESLNAAVAG++VL EAQRQR V
Sbjct:    1 EGHRLVLDALASGLQPEFVVIHDAALASSIGERLGTALAQLETDRVVRTPAHIVEQLSDTQTPQGVIAVLAHEPLPLPPAPTLVLVCDGISDPGNLGTLLRSAAGSGVDAVLLLPGCSDPWGLKTLRSGMGAQFRVPLQHMGTWADTSDLLADWSCTALAADAGGELAHDEVDWRRGAALIVGSEAHGLSDAVRADPS---VQLCRVPLAEGLGASECLESLNAAVAGSVVLFEAQRQRRV 238          
BLAST of mRNA_Ecto-sp13_S_contig61.16768.1 vs. uniprot
Match: A0A7S0LQQ5_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LQQ5_9EUKA)

HSP 1 Score: 200 bits (508), Expect = 1.430e-55
Identity = 109/263 (41.44%), Postives = 161/263 (61.22%), Query Frame = 2
Query:  380 ITSAQNPKVKLMRSFHKRRTRDDGGKILAEGHRLVCDLIEGGLTPTLVIVSPEALRASPGPRLQAAL-ETLSADIVAVAPAEVVQRCCDTVTSQGVVALVERPVLPLPPTMQTVLICDGIQDPGNLGTLVRTAAGLGADAVVLTGSCVDYWAPKTVRASMGASFRLPSLRLESWQEVVELMRARGIRMYAADGGARLSHFDADWTSPSALVVGAEARGLSDAARLELESGGIAGVSVPLGGGVESLNAAVAGAIVLGEAQRQR 1165
            ++S  NP++KL+R    +R RD  G ++ EGHRL+ D ++ G +   V++S EAL A  G RL  +L E L A+ +A+AP  ++    DT T QGVV ++++P L LP +   VL+ D I DPGNLGTL+R+AAG G ++ +L   C D W  K +RA MGA  RLP + +  + E   ++R  G    AAD      ++  DW  PSALVVG+EA GL++    ++++       +PL  GVESLNAA+AG++++ E  RQR
Sbjct:   33 LSSTSNPRIKLLRKLQAKRARDKSGLMILEGHRLLTDALDAGYSADFVLLSEEALHAPEGARLARSLREVLRAEQLAIAPQSLIAELSDTQTPQGVVGMLQQPRLALPESPSFVLVLDRISDPGNLGTLLRSAAGAGVESALLLSGCTDPWGLKALRAGMGAQLRLPLVEVRGYAEAAGMLRRWGCHGVAADARGETDYWAVDWRQPSALVVGSEAHGLAEEVLSDVDT---QLCRIPLANGVESLNAAIAGSVMMYEVGRQR 292          
BLAST of mRNA_Ecto-sp13_S_contig61.16768.1 vs. uniprot
Match: A0A1X6PKW2_PORUM (SpoU_sub_bind domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PKW2_PORUM)

HSP 1 Score: 198 bits (504), Expect = 3.050e-54
Identity = 124/281 (44.13%), Postives = 169/281 (60.14%), Query Frame = 2
Query:  332 SSIPNGLWRDRGGTLDITSAQNPKVKLMRSFHKRRTRDDGGKILAEGHRLVCDLIEGGLTPTLVIVSPEALRASPGPRLQAALET---LSADIVAVAPAEVVQRCCDTVTSQGVVALVERPVLPLPPTMQTVLICDGIQDPGNLGTLVRTAAGLGADAVVLTGSCVDYWAPKTVRASMGASFRLPSLRLESWQEVVELMRARGIRMYAADGGARLSHFDADWTSPSALVVGAEARGLSDAARLELESGGIAGVSVPLGGGVESLNAAVAGAIVLGEAQRQR 1165
            S +P+ L       +++ S +NP++K +R   +RR R+  G +L EGHRLV D + G   P   + +  A R +   RL  AL T   ++ D + VA  +VV   CDTVT QGVVA+V RP   + P    +L  DG+ DPGN+GTL+R+AA  GAD VVLT  C D W+PK +RA MGA  RLP L     +EVV   R RG+R+  ADG A +++   DW +P+ LVVG EA G S A     +      V++P+ G VESLNAA+AG++VL EA+RQR
Sbjct:   80 SPLPDALQ----DAVEVVSTRNPRIKAVRHLLRRRMREREGLLLLEGHRLVVDAL-GAARPAAPVHTVVATRQAAA-RLWPALSTATGVARDALLVATPDVVASVCDTVTPQGVVAVVGRPSTTVVPGSTLLLALDGVADPGNVGTLLRSAAAAGADGVVLTKGCADVWSPKALRAGMGAQLRLPVLAGLEPEEVVAWARGRGLRLRVADGSAVMAYDGVDWAAPTVLVVGGEAEGPSAALLAAADDV----VAIPMLGEVESLNAAIAGSVVLYEARRQR 350          
BLAST of mRNA_Ecto-sp13_S_contig61.16768.1 vs. uniprot
Match: A0A0P6YEI2_9CHLR (SpoU_sub_bind domain-containing protein n=2 Tax=Ardenticatena maritima TaxID=872965 RepID=A0A0P6YEI2_9CHLR)

HSP 1 Score: 195 bits (495), Expect = 3.200e-54
Identity = 116/265 (43.77%), Postives = 158/265 (59.62%), Query Frame = 2
Query:  380 ITSAQNPKVKLMRSFHKRRTRDDGGKILAEGHRLVCDLIEGGLT-PTLVIVSPEALRASPGPRLQAALETLSADIVAVAPAEVVQRCCDTVTSQGVVALVERPVLPLPPTMQTVLICDGIQDPGNLGTLVRTAAGLGADAVVLTGSCVDYWAPKTVRASMGASFRLPSLRLESWQEVVELMRARGIRMYAADGGARLSHFDADWTSPSALVVGAEARGLSDAARLELESGGIAGVSVPLGGGVESLNAAVAGAIVLGEAQRQRLV 1171
            ITS  NP+VK  R+ H+RR R+  GKIL EG RLV D  + G+    L   S +A       R  A L +           EV+Q   DTVT QG+VA+ ERP L  P +   +LI D ++DPGNLGTL+R AAG G + V+L    VD W+PK +RA MGA FRLP     +W+E+ + +   G+ +Y AD    + +FD DWT+P+ L+VG E  G+ +AAR    +     V++PL   VESLNAA+AG ++L EA+RQRL+
Sbjct:    4 ITSLANPRVKAARALHRRRMREREGKILLEGARLVHDAFQAGVAFEALFYTSDQAAHIPEALRSCAWLVS----------EEVMQALSDTVTPQGIVAVAERPQLAWPTSATLLLIADNVRDPGNLGTLLRAAAGAGVEGVLLPKGTVDVWSPKVLRAGMGAHFRLPVRAGLTWEEIAQAVN--GLTVYVADARGAVRYFDVDWTAPTVLIVGGETEGIGEAARALAHTA----VAIPLAREVESLNAAMAGTVILFEARRQRLM 252          
BLAST of mRNA_Ecto-sp13_S_contig61.16768.1 vs. uniprot
Match: A0A540V9T9_9CHLR (RNA methyltransferase n=1 Tax=Litorilinea aerophila TaxID=1204385 RepID=A0A540V9T9_9CHLR)

HSP 1 Score: 190 bits (483), Expect = 2.120e-52
Identity = 116/263 (44.11%), Postives = 158/263 (60.08%), Query Frame = 2
Query:  380 ITSAQNPKVKLMRSFHKRRTRDDGGKILAEGHRLVCDLIEGGLTPTLVIVSPEALRASP-GPRLQAALETLSADIVAVAPAEVVQRCCDTVTSQGVVALVERPVLPLPPTMQTVLICDGIQDPGNLGTLVRTAAGLGADAVVLTGSCVDYWAPKTVRASMGASFRLPSLRLESWQEVVELMRARGIRMYAADGGARLSHFDADWTSPSALVVGAEARGLSDAARLELESGGIAGVSVPLGGGVESLNAAVAGAIVLGEAQRQR 1165
            ITS  NP++K +R  H+RR R + G+IL EG RLV D  + G+ P +V+  PEA+       RL   L+    + +A +P EV     DTVT QG++A+V  P  PLP     VLI D ++DPGN GTL+RTA   G D V+L    VD +  K +RA MGA FRLP    ESW+++ + +    I +Y A+  A+  +   DW  P+ALV+G EA G SDAAR    +     +++P+ G VESLNAAVAGA++L EA RQR
Sbjct:    2 ITSTSNPRIKEIRKLHRRRHRHESGRILLEGVRLVEDATQAGVRPEMVLYVPEAVAGQERAARLLQQLQEQGVECLACSP-EVFASVSDTVTPQGILAVVPLPHRPLPSQPTLVLILDQVRDPGNAGTLLRTAEAAGVDLVLLAPGTVDPFNEKVIRAGMGAHFRLPLRICESWEQLAQQLPPEMI-LYRAEAEAQTPYDQVDWRRPAALVIGGEAAGPSDAARQRTHA-----IAIPMQGQVESLNAAVAGAVILFEAARQR 257          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig61.16768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4S8_9PHAE7.300e-22495.80SpoU_sub_bind domain-containing protein n=2 Tax=Ec... [more]
A0A835Z4A7_9STRA3.150e-9958.76tRNA/rRNA methyltransferase n=1 Tax=Tribonema minu... [more]
A0A8J5X903_DIALT1.260e-5943.77SpoU_sub_bind domain-containing protein n=1 Tax=Di... [more]
R1BHS4_EMIHU6.130e-5944.49RNA methyltransferase n=3 Tax=Emiliania huxleyi Ta... [more]
R7QT73_CHOCR5.580e-5644.84SpoU_sub_bind domain-containing protein n=1 Tax=Ch... [more]
A0A7S2B686_9EUKA1.140e-5548.13Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S0LQQ5_9EUKA1.430e-5541.44Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A1X6PKW2_PORUM3.050e-5444.13SpoU_sub_bind domain-containing protein n=1 Tax=Po... [more]
A0A0P6YEI2_9CHLR3.200e-5443.77SpoU_sub_bind domain-containing protein n=2 Tax=Ar... [more]
A0A540V9T9_9CHLR2.120e-5244.11RNA methyltransferase n=1 Tax=Litorilinea aerophil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig61contigEcto-sp13_S_contig61:21528..25674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score639.8
Seed ortholog evalue7.6e-181
Seed eggNOG ortholog2880.D7FLV7
Preferred nameRNMTL1
Model size1906
KEGG rclassRC00004,RC02723,RC02817
KEGG koko:K00140,ko:K03437,ko:K03768,ko:K20095
KEGG ReactionR00705,R00706,R00922,R00935
KEGG Pathwayko00280,ko00410,ko00562,ko00640,ko01100,ko01200,map00280,map00410,map00562,map00640,map01100,map01200
KEGG ModuleM00013
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0000451,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0031974,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070039,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360
Exons7
EggNOG free text desc.RNA methyltransferase activity
EggNOG OGsCOG0566@1,KOG2506@2759
Ec32 ortholog descriptiontRNA/rRNA methyltransferase, SpoU type
Ec32 orthologEc-26_001080.1
EC1.2.1.18,1.2.1.27,5.2.1.8
Cds size1074
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03016,ko03110
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig61.16768.1prot_Ecto-sp13_S_contig61.16768.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig61 21703..25017 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463850.1890519-UTR-Ecto-sp13_S_contig61:21527..217021681463850.1890519-UTR-Ecto-sp13_S_contig61:21527..21702Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig61 21528..21702 +
1681463850.4028556-UTR-Ecto-sp13_S_contig61:25017..256741681463850.4028556-UTR-Ecto-sp13_S_contig61:25017..25674Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig61 25018..25674 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463850.216066-CDS-Ecto-sp13_S_contig61:21702..219441681463850.216066-CDS-Ecto-sp13_S_contig61:21702..21944Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61 21703..21944 +
1681463850.3331585-CDS-Ecto-sp13_S_contig61:22389..225101681463850.3331585-CDS-Ecto-sp13_S_contig61:22389..22510Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61 22390..22510 +
1681463850.3571472-CDS-Ecto-sp13_S_contig61:22825..230331681463850.3571472-CDS-Ecto-sp13_S_contig61:22825..23033Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61 22826..23033 +
1681463850.367368-CDS-Ecto-sp13_S_contig61:23425..234781681463850.367368-CDS-Ecto-sp13_S_contig61:23425..23478Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61 23426..23478 +
1681463850.3759959-CDS-Ecto-sp13_S_contig61:23701..238131681463850.3759959-CDS-Ecto-sp13_S_contig61:23701..23813Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61 23702..23813 +
1681463850.3850415-CDS-Ecto-sp13_S_contig61:24240..243571681463850.3850415-CDS-Ecto-sp13_S_contig61:24240..24357Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61 24241..24357 +
1681463850.393706-CDS-Ecto-sp13_S_contig61:24796..250171681463850.393706-CDS-Ecto-sp13_S_contig61:24796..25017Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61 24797..25017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig61.16768.1

>prot_Ecto-sp13_S_contig61.16768.1 ID=prot_Ecto-sp13_S_contig61.16768.1|Name=mRNA_Ecto-sp13_S_contig61.16768.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=358bp
MSVAFNSGPSAAPLARMIAAFVASRAGRPPSAGSRDGGGGGIRDRGIRAA
AMSSIPNGLWRDRGGTLDITSAQNPKVKLMRSFHKRRTRDDGGKILAEGH
RLVCDLIEGGLTPTLVIVSPEALRASPGPRLQAALETLSADIVAVAPAEV
VQRCCDTVTSQGVVALVERPVLPLPPTMQTVLICDGIQDPGNLGTLVRTA
AGLGADAVVLTGSCVDYWAPKTVRASMGASFRLPSLRLESWQEVVELMRA
RGIRMYAADGGARLSHFDADWTSPSALVVGAEARGLSDAARLELESGGIA
GVSVPLGGGVESLNAAVAGAIVLGEAQRQRLVAERHVGVRGGRGATGDGE
LSGAVSQ*
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mRNA from alignment at Ecto-sp13_S_contig61:21528..25674+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig61.16768.1 ID=mRNA_Ecto-sp13_S_contig61.16768.1|Name=mRNA_Ecto-sp13_S_contig61.16768.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4147bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61:21528..25674+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGTCTACTCTGGTCTACTCATCGAGTGCAACCTGGGGGGTCCGCGGAA TAGATTGCCCCATATGGCGTGTTCGAGCTATCAGATCACTGCGCAGCTGC TGCTGCACAGCAACTGAGCTGAGCTCGCCAAACTGCCGTTGTGCTCTCCG GCACTCTCACACTGCCCTCCGAGTCATGTCTGTTGCTTTCAACTCAGGAC CGTCAGCCGCGCCACTGGCGAGGATGATAGCAGCCTTCGTTGCGTCACGC GCGGGCCGACCGCCGTCAGCCGGCAGCCGAGATGGCGGCGGCGGCGGCAT CAGAGATCGCGGCATCAGAGCAGCTGCGATGTCGTCGATACCGAACGGCC TTTGGCGCGACAGAGGCGGAACACTTGACATCACGAGTGCGCAAAACCCT AAGGTCAAGCTCATGAGGTTCGTGCGTGCGTTGGAGCGTGTCTGTTTGAG TAGCTATGCTGAAGTGTCACAGAAGACAGCAGTGTGGAAGGTGTGATGTC ATGTTTGACGAGCTCGTTGAACCTTTACCTCGCAGAACGTTGTCTTGAGT CTTGTGTTGCTGCCAGTGGGTTGAACGCAGAACAAAATAGAGCCCTACCT TACCAATGGCATCCCTCTAGGTATCACATTAGTAGGTGCGAAGCGTCGCA AGCTATTAGGTGACAATGTGACAATTACACCAAACCGGCCGCAACTTGAT TTTGAATTCCCCGCAGAAGATCACCTCTCACAAGATCACTCGTGTTGCAC TTGGAGTGCACAGTTGTGCATCGCGCCCGCAGTCGGTTTATCAACCACCG TTGGGTGACTTCGCTCGACACACCACATACCGCTGTAACGCTGTCGCGCG AACACGACCCAGGTCCTTCCACAAGCGACGGACTCGCGACGACGGTGGGA AAATCTTGGCCGAAGGCCACCGGCTAGTGTGCGACCTCATCGAAGGCGGC CTCACTCCGACCCTCGTCATCGTGTCCCCTGAGGCGAGTTCGACTTTTTC TCTCTCTCTCGAGCTTAGAAGTACTCGACCAAACGTTGGCAAAGTGATTG CATTTCTAGTCCTAACCCTAAGTATGGATCGTCTGGGGAACCAAGGCGAT GTGCTCGTCCTCCGCCCCTCGTGTTTAGGTCATAGTTGTCGCTTCAGTTG TCGTCGCGATTGTCGTGACCTTCGTCTTTTCCGTAGTCGGTGTTGCAGTT TCGTTAGAGTCGCCGGCGTCGCCTATTGCTGTTGCCGGTGGCACAGCACC GCGTACCTTGACCCCCACACCTCCTCCTCCTCCGACGGTTTGCAATAGGC CCTGCGCGCGTCCCCGGGCCCCCGGCTGCAGGCCGCGTTGGAAACCCTCT CGGCAGACATCGTCGCCGTCGCCCCCGCGGAAGTCGTCCAGCGGTGCTGC GACACGGTCACGTCGCAGGGGGTGGTGGCGCTCGTCGAGAGGCCGGTGCT ACCCCTACCCCCGACCATGCAGACGGTATTGATTTGCGACGGCATTCAAG ACCCAGGTGCGGGGCGAAGGATCAGCGGATACAATGTGGTTACCTGTAGG GAGGAGAAGGAGTTGTTTGTGGTATCTTCGTAGGTTGAGGTAAATGAATG TGGCTACCTTCCAACGGAAGTTCCAACGGAAGAAATTGTTTGTGTTACTT CGAAAGGTGAGGTATATCTGCGGGTAGGTAGCGTTGTCGCGGACGGGTGC CGGGCGGCAAGTCATTAGCGCGGGCGTCTCCGCGTATAGTTGCCCGACCG GTTTGTCGCAGGATCGTGGGAACACTGAAACATCGTCAGAAGTTCTACTG CTCAGACCGAAACACGATGCCCAATAACGGCAGTGCCTCCCCCCCCCCCC CCCCCCCCTGCCTGTGCCCATGTGCGGTCCCCTCCGACACGGCGAAAGGC AACCTTGGGACCCTCGTTCGGACGGCGGCGGGCTTGGGAGCAGACGCCGT GGTGAGCAATGCATCGACTTAAAGCTGGACGCTGATGGGTCAACGTTGGG CATCGGCTTGTTCCGAAACAGTGCTTTGTAGCACGAAAAAGTAGCATGTG CTCCTGTTCTTGTGGGAACTCCCTGTTCGACGCGGGTATCTTTAACCGGT GATTACCCTCCCTCCCGCTGCGCGACCACGCTGTACTAAACGCATCTGAA AACTGGAACGTTCCATCGGTTTAGGTGCTGACGGGTTCGTGCGTAGACTA TTGGGCGCCAAAGACCGTTCGTGCCTCTATGGGGGCTTCGTTCCGACTGC CATCCCTGAGGCTGGAGTCTTGGCAAGAGGTCGTAGGTAAGAGTCGTCAA GACTTGGTAGGTGACAGGTCGTCGCTGCAGCGGCGGCGGCGACGGTGGTG GCGGCTTCTGTCTGCGGAGGCCTCCGCATCAAATCTCTTTCTGTAGGTTG TGATACGATACCACACCGCTTGGACCGATTTTGGAAGCCTGTATTACTCC ACAACGGAGAGGACGCCGAAATTAAATGATGCGTTGTCGGAAACCTCTAG ATGAGGCGGTTCCAATGCCGCTTCAATTTTATGCTACAGAACATTCGAGC TTTGAAAACCGGTCAAGAGGGGTGTGTTATCTTGCGTCACCTACGGTGTT ACCCTCTGGACACGTGGAAGAGGTCGTGTCTGACCACGGGATGGCCCGCT CTCTCCCAAATCCCCCTTGACCCACCACTTCTTTCCCCCCCCGAACGCTC GCGGAACAAACAGAGTTGATGCGGGCGCGTGGCATCCGCATGTACGCAGC TGATGGGGGCGCGAGACTATCGCACTTCGACGCCGACTGGACCTCTCCAA GCGCGCTCGTCGTCGGCGCGGAGGCAAGGGGTAAGCCAGATAAGAGCGCA GTGGTAGGGGTACAGCGGGGGGGCTACTCACGTTTAGCATGCCGTTGTTA ATTGACCAGCGTGGCGCTGTGATACCCATCTTTTCTCGTACAATGCATAT GCACGTGGCGGCCCTCTGAACTGTAAAATTTGCCTGAAGGGCACGGGCGT GTCTTGATAGTTAAGTGCGCCCAGTGCTGTGAAATACGGTAATCTGCGTA AGATTGCCCCCCCGCCGGTCTCTTTTCGATTCGAGCTTAGCCCCCCCCCC TCCGCGGCCATTCGTTCGCAGATTTCGGTGTTGAGGTGTGTTCGGGGATA AGGGTTTGTCGCTGACCCGATCTCCGTTGGCGATATGCAGAGGTCTGCTG CATGACATAGGAACCTGACGAAGTGGTCTCCTCCCACTTCGCTGCTGTCA ATCCTTTGTGTTGCCCCAGGCCTCAGCGACGCCGCGAGGCTAGAGCTGGA GAGCGGGGGCATCGCGGGGGTCAGTGTACCCCTGGGCGGGGGGGTGGAAT CGTTGAACGCGGCGGTGGCGGGTGCTATTGTACTAGGCGAGGCGCAGCGG CAGCGTTTGGTGGCGGAGAGGCACGTTGGGGTTCGGGGGGGGAGAGGGGC GACGGGAGATGGCGAGTTGTCGGGGGCAGTCTCGCAATGATGACGCCACC GTTTCGCGGCCCGGAATATATCATCGTTTTTTTGTTGTCGTTGACCGAGG ACTTTTGAAAACGTGGTCCCTCAATCCGTTGTGGTTGGTTCTTGGATGGT TTTGACCTTTCCGTGATGCGTAACCGGTGCGAGCACCAGAGAGGTAGATT GAGGAAGAGAGAGAGAGACAGACGGACAGACAGAGCAAGTGCCGCCAGAT ATTCTACTCGGCCAATGAGCAGTTTGCTGGCCGGAGTGCAACGTGCCGAA AGTTGTTGGTGCTCGCGGTTGCGACCACGTCACGGAAACAAACGCGTTTG CGTGGGCGAGGAGCAGCTCATTACTTGGAAGTCGGCGAAGCAGCCTCGAA TCGTGGGTGTGTCAAGGCCCCATCGCCCACGATCATGTGGTTGAGTCCGT GCGGTACCACGCTTGTTCTTTTATTTCCTACATCACTCCGAATCTTTTTA TCAGCGCTCAGAGCTAAGTATTCCGAGGATGAACTCCGATCCGTTGTGCC CCGTGCACGATAGGGTCTTGAAATGTCTGTTGACATGTGCGATGATTTCT TGTGCTAGTGGTTGCTTTGAAAGTGAGCACGAACCTTTTTCGACTGTTGT GGTGCCATCATCAGCGCTGTTATTTCGAGGTCTTTCACTCTATGGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig61:21528..25674+

>mRNA_Ecto-sp13_S_contig61.16768.1 ID=mRNA_Ecto-sp13_S_contig61.16768.1|Name=mRNA_Ecto-sp13_S_contig61.16768.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1074bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61:21528..25674+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTGTTGCTTTCAACTCAGGACCGTCAGCCGCGCCACTGGCGAGGAT
GATAGCAGCCTTCGTTGCGTCACGCGCGGGCCGACCGCCGTCAGCCGGCA
GCCGAGATGGCGGCGGCGGCGGCATCAGAGATCGCGGCATCAGAGCAGCT
GCGATGTCGTCGATACCGAACGGCCTTTGGCGCGACAGAGGCGGAACACT
TGACATCACGAGTGCGCAAAACCCTAAGGTCAAGCTCATGAGGTCCTTCC
ACAAGCGACGGACTCGCGACGACGGTGGGAAAATCTTGGCCGAAGGCCAC
CGGCTAGTGTGCGACCTCATCGAAGGCGGCCTCACTCCGACCCTCGTCAT
CGTGTCCCCTGAGGCCCTGCGCGCGTCCCCGGGCCCCCGGCTGCAGGCCG
CGTTGGAAACCCTCTCGGCAGACATCGTCGCCGTCGCCCCCGCGGAAGTC
GTCCAGCGGTGCTGCGACACGGTCACGTCGCAGGGGGTGGTGGCGCTCGT
CGAGAGGCCGGTGCTACCCCTACCCCCGACCATGCAGACGGTATTGATTT
GCGACGGCATTCAAGACCCAGGCAACCTTGGGACCCTCGTTCGGACGGCG
GCGGGCTTGGGAGCAGACGCCGTGGTGCTGACGGGTTCGTGCGTAGACTA
TTGGGCGCCAAAGACCGTTCGTGCCTCTATGGGGGCTTCGTTCCGACTGC
CATCCCTGAGGCTGGAGTCTTGGCAAGAGGTCGTAGAGTTGATGCGGGCG
CGTGGCATCCGCATGTACGCAGCTGATGGGGGCGCGAGACTATCGCACTT
CGACGCCGACTGGACCTCTCCAAGCGCGCTCGTCGTCGGCGCGGAGGCAA
GGGGCCTCAGCGACGCCGCGAGGCTAGAGCTGGAGAGCGGGGGCATCGCG
GGGGTCAGTGTACCCCTGGGCGGGGGGGTGGAATCGTTGAACGCGGCGGT
GGCGGGTGCTATTGTACTAGGCGAGGCGCAGCGGCAGCGTTTGGTGGCGG
AGAGGCACGTTGGGGTTCGGGGGGGGAGAGGGGCGACGGGAGATGGCGAG
TTGTCGGGGGCAGTCTCGCAATGA
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