mRNA_Ecto-sp13_S_contig10141.168.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10141.168.1
Unique NamemRNA_Ecto-sp13_S_contig10141.168.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10141.168.1 vs. uniprot
Match: A0A6H5JGV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGV0_9PHAE)

HSP 1 Score: 530 bits (1364), Expect = 8.730e-184
Identity = 283/316 (89.56%), Postives = 290/316 (91.77%), Query Frame = 1 
Query:  214 VMGLSRRVKADVQRAIKVKDDELGEMVAMMDEEELRALADFGPTGKEDINLWKRDRRKRSWRRLSAFGMLRNDPSLYRQWAQQRYQRLASQAEVTNTDRMLGTTCATDAARRPPWSTDLHYSHRCRAQQXXXXXXXXXXXXXRASIADLPVSDESSNATVLGRLSRKCVHTAPSSRHPARAVAKNRPVSAPSGAVERISPRPDQRETTRTPSLARLARVFYQSTVASTASTLGECSSRQQPSSIEYLSGEKPDPAESVCFQASSQPEIYKGEASKDDSHAETTTSVVHGERNGDTIRSSELDGVEKRMESVRLLWA 1161
            VMGLSRRVKADVQRAI+VKD ELG+MVAMMDEEELRAL DFGPTGKEDINLWKRDRRKRSWRRLSAFGM+RNDPSLYRQWAQQRYQRLASQAEVTNTDRMLGTTCATDAARRPPWSTDLHYSHRCRAQQ             RASIADLPVSDESS AT LGRL  KCVHTAPSSRHPARAVAKNRP SAPSGAVER+SPR DQRET RTPSLARLARVFYQSTVASTASTLGECSSRQQPSSIEYLSGE PDPAESVCFQ SSQPE ++GEASKDDSHA+TTTSVVHGERNGDTIRSS LDGVEKRMESVRLLWA
Sbjct:  146 VMGLSRRVKADVQRAIQVKDYELGKMVAMMDEEELRALVDFGPTGKEDINLWKRDRRKRSWRRLSAFGMVRNDPSLYRQWAQQRYQRLASQAEVTNTDRMLGTTCATDAARRPPWSTDLHYSHRCRAQQQQPGIKQQQQRQQRASIADLPVSDESSIATGLGRL--KCVHTAPSSRHPARAVAKNRPASAPSGAVERVSPRQDQRETARTPSLARLARVFYQSTVASTASTLGECSSRQQPSSIEYLSGEIPDPAESVCFQVSSQPEAHEGEASKDDSHAQTTTSVVHGERNGDTIRSSALDGVEKRMESVRLLWA 459
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BLAST of mRNA_Ecto-sp13_S_contig10141.168.1 vs. uniprot
Match: D7G463_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G463_ECTSI)

HSP 1 Score: 467 bits (1202), Expect = 8.150e-156
Identity = 247/275 (89.82%), Postives = 256/275 (93.09%), Query Frame = 1 
Query:    1 ELKERGQKKRKALTTSVKRITKSQRDSFVRKVTGVTKGSGKACTENALSMPAPRARRIQKNLDTTRYARAEVMGLSRRVKADVQRAIKVKDDELGEMVAMMDEEELRALADFGPTGKEDINLWKRDRRKRSWRRLSAFGMLRNDPSLYRQWAQQRYQRLASQAEVTNTDRMLGTTCATDAARRPPWSTDLHYSHRCRAQQXXXXXXXXXXXXXRASIADLPVSDESSNATVLGRLSRKCVHTAPSSRHPARAVAKNRPVSAPSGAVERISPRPDQ 825
            ELKERGQK+RKALTTSVKRI KSQRDSFVRKV+GVTKGSGKACTENALSMP+PRAR+IQKNLDTTRYARAEVMGLSRRVKADVQRAI+VKDDELG+MVAMMDEEELRALADFGPTGKEDINLWKRDRRKRSWRRLSAFGM+RNDPSLYRQWAQQRYQRLASQAE TNTDRMLGTTCATDAARRPPWSTDLHYSHRCRAQQ             RASIADLP+SDESSNA  LGRLSRKCVHTAPSSRHPARAVAKNRP SAPSGA ER+SPRPDQ
Sbjct:  214 ELKERGQKRRKALTTSVKRIPKSQRDSFVRKVSGVTKGSGKACTENALSMPSPRARKIQKNLDTTRYARAEVMGLSRRVKADVQRAIQVKDDELGKMVAMMDEEELRALADFGPTGKEDINLWKRDRRKRSWRRLSAFGMVRNDPSLYRQWAQQRYQRLASQAEGTNTDRMLGTTCATDAARRPPWSTDLHYSHRCRAQQMQPAIKQQQQRQQRASIADLPMSDESSNAKGLGRLSRKCVHTAPSSRHPARAVAKNRPASAPSGAAERVSPRPDQ 488
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10141.168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JGV0_9PHAE8.730e-18489.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G463_ECTSI8.150e-15689.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10141contigEcto-sp13_S_contig10141:1..1878 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score478.4
Seed ortholog evalue3.7e-132
Seed eggNOG ortholog2880.D7G463
Preferred nameRPS7
Model size1362
KEGG koko:K02993,ko:K11592
KEGG Pathwayko03010,ko05206,map03010,map05206
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000956,GO:0001838,GO:0001841,GO:0001843,GO:0002009,GO:0002181,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0003730,GO:0003735,GO:0004857,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0007399,GO:0008104,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0014020,GO:0015031,GO:0015833,GO:0015935,GO:0016070,GO:0016071,GO:0016072,GO:0016331,GO:0019222,GO:0019439,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0021915,GO:0022613,GO:0022626,GO:0022627,GO:0023051,GO:0023056,GO:0030097,GO:0030154,GO:0030162,GO:0030234,GO:0030684,GO:0030686,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031647,GO:0031974,GO:0031981,GO:0032040,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035148,GO:0035239,GO:0035295,GO:0042176,GO:0042177,GO:0042254,GO:0042274,GO:0042886,GO:0042981,GO:0043009,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045861,GO:0046483,GO:0046700,GO:0046907,GO:0048027,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048584,GO:0048598,GO:0048646,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0051438,GO:0051444,GO:0051641,GO:0051649,GO:0051726,GO:0055105,GO:0055106,GO:0060255,GO:0060429,GO:0060562,GO:0060606,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072175,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0098772,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901796,GO:1901798,GO:1902253,GO:1902255,GO:1902531,GO:1902533,GO:1903050,GO:1903051,GO:1903320,GO:1903321,GO:1903362,GO:1903363,GO:1904666,GO:1904667,GO:1990904,GO:1990948,GO:2000058,GO:2000059,GO:2001233,GO:2001235,GO:2001242,GO:2001244
Exons3
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsKOG3320@1,KOG3320@2759
Ec32 ortholog descriptionRibosomal protein S7e
Ec32 orthologEc-02_001430.1
Cds size1362
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462510.3731031-CDS-Ecto-sp13_S_contig10141:0..931681462510.3731031-CDS-Ecto-sp13_S_contig10141:0..93Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10141 1..93 +
1681462510.3848953-CDS-Ecto-sp13_S_contig10141:353..4731681462510.3848953-CDS-Ecto-sp13_S_contig10141:353..473Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10141 354..473 +
1681462510.394291-CDS-Ecto-sp13_S_contig10141:729..18781681462510.394291-CDS-Ecto-sp13_S_contig10141:729..1878Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10141 730..1878 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10141.168.1prot_Ecto-sp13_S_contig10141.168.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10141 1..1878 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10141.168.1

>prot_Ecto-sp13_S_contig10141.168.1 ID=prot_Ecto-sp13_S_contig10141.168.1|Name=mRNA_Ecto-sp13_S_contig10141.168.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=454bp
ELKERGQKKRKALTTSVKRITKSQRDSFVRKVTGVTKGSGKACTENALSM
PAPRARRIQKNLDTTRYARAEVMGLSRRVKADVQRAIKVKDDELGEMVAM
MDEEELRALADFGPTGKEDINLWKRDRRKRSWRRLSAFGMLRNDPSLYRQ
WAQQRYQRLASQAEVTNTDRMLGTTCATDAARRPPWSTDLHYSHRCRAQQ
QQPGKKQQQQRQQRASIADLPVSDESSNATVLGRLSRKCVHTAPSSRHPA
RAVAKNRPVSAPSGAVERISPRPDQRETTRTPSLARLARVFYQSTVASTA
STLGECSSRQQPSSIEYLSGEKPDPAESVCFQASSQPEIYKGEASKDDSH
AETTTSVVHGERNGDTIRSSELDGVEKRMESVRLLWAVSQLSTDAVTKKI
MHGYSERQRAREPNRTKWNTPSRRPQPPAGPRNSQVNAHRKERGYNAGRR
IVR*
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mRNA from alignment at Ecto-sp13_S_contig10141:1..1878+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10141.168.1 ID=mRNA_Ecto-sp13_S_contig10141.168.1|Name=mRNA_Ecto-sp13_S_contig10141.168.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1878bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10141:1..1878+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCTGAAGGAACGCGGGCAGAAAAAAAGGAAGGCATTGACAACCTCGGT
CAAGCGCATCACGAAGTCTCAACGAGACAGCTTCGTCCGAAAAGTGATTT
CCAGATGATGTTGATGGAAGCAGGCATCAGCACTGCCCCTTTACCTTTCA
GTCGTAGTCGCAATGAGTACCGCGTGTGTTGCTGACGACGTGCATACGAG
GTTCGATAGAGTGATTTCATTCGCACGGCTTGTCTGCTATGGTGTTTTAC
GCGACACGTTGATCAAGCGTTCGTCACAGCTGCATGTGATACGCACGTTG
CAAAGAACGATGAAAGCCACACGTCACAATTTTACGATGATGCCTATCCT
CAGGTTACTGGCGTTACCAAAGGCAGTGGTAAAGCTTGCACCGAAAACGC
ATTATCGATGCCGGCTCCTAGGGCACGAAGAATACAGAAGAACCTCGATA
CCACGCGATACGCCCGGGCAGAGGTAGGCATGTGCTATGTGCTCGCCCTC
TTGTAGTGCGTGACTTACCGCGGTCTCAGGGCGTGCCCCGTTGTCGTGGT
GAGAACAATTGCACTGTTTCAAATCACTACGCATGCCATCCGAGTGACAC
ACGCCGCACCTGTGCCGTGCCCTTGTCGACAAACAAAGTGGGCCATGTTT
CAGCGAAACGCCCTTGCATGTACCTACCCGCGTCGGCCATCCGAGTGACA
CACGCCATCCTTTTCACGACCCGGAACAGGTGATGGGTTTGAGTAGACGC
GTGAAGGCAGACGTTCAGCGTGCTATTAAGGTCAAAGATGATGAGCTGGG
GGAAATGGTAGCCATGATGGACGAGGAAGAGCTCCGTGCGCTGGCGGACT
TCGGACCTACGGGAAAGGAGGACATCAACCTCTGGAAACGAGATCGTCGA
AAACGGTCATGGCGACGTCTTTCTGCCTTTGGGATGCTTCGAAATGACCC
ATCCCTTTACCGCCAATGGGCCCAGCAGCGATATCAACGCTTGGCATCAC
AAGCTGAGGTCACGAACACCGACCGTATGCTTGGGACTACCTGCGCTACC
GATGCCGCCCGCCGGCCACCTTGGTCGACGGACCTCCATTACTCGCACAG
ATGTCGCGCACAGCAACAGCAACCCGGAAAAAAGCAGCAGCAACAGCGAC
AGCAACGCGCCTCCATTGCAGACCTGCCCGTGTCTGACGAGAGCTCGAAT
GCTACAGTTCTGGGGCGACTGTCTCGAAAATGTGTCCACACGGCCCCTTC
CTCGAGACATCCGGCAAGGGCGGTCGCGAAAAATCGACCGGTTTCGGCGC
CTTCGGGGGCGGTAGAAAGGATATCACCCCGGCCAGACCAACGTGAGACC
ACAAGGACCCCAAGTTTGGCGAGACTTGCAAGGGTTTTCTACCAGTCGAC
CGTGGCGTCAACCGCTTCTACGCTCGGGGAATGTTCGAGTCGGCAGCAGC
CTTCAAGTATTGAGTACCTTTCAGGAGAAAAACCAGACCCCGCTGAAAGC
GTGTGTTTCCAAGCTTCCTCTCAGCCGGAAATATACAAAGGCGAGGCGAG
CAAGGACGACAGCCATGCTGAAACAACGACTAGCGTAGTGCACGGAGAAC
GGAACGGTGACACAATTCGTTCATCAGAGCTGGACGGTGTTGAGAAGCGC
ATGGAGAGCGTGCGCTTGCTGTGGGCGGTGTCACAGCTTTCGACCGACGC
CGTAACCAAGAAAATTATGCATGGGTACTCAGAGCGACAGCGAGCCAGAG
AGCCGAACAGGACAAAGTGGAACACGCCGTCCCGTAGGCCTCAGCCACCA
GCGGGTCCCCGTAACTCCCAGGTCAACGCCCATAGAAAAGAACGAGGTTA
TAACGCGGGCAGGCGTATCGTTCGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10141:1..1878+

>mRNA_Ecto-sp13_S_contig10141.168.1 ID=mRNA_Ecto-sp13_S_contig10141.168.1|Name=mRNA_Ecto-sp13_S_contig10141.168.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1362bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10141:1..1878+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCTGAAGGAACGCGGGCAGAAAAAAAGGAAGGCATTGACAACCTCGGT
CAAGCGCATCACGAAGTCTCAACGAGACAGCTTCGTCCGAAAAGTTACTG
GCGTTACCAAAGGCAGTGGTAAAGCTTGCACCGAAAACGCATTATCGATG
CCGGCTCCTAGGGCACGAAGAATACAGAAGAACCTCGATACCACGCGATA
CGCCCGGGCAGAGGTGATGGGTTTGAGTAGACGCGTGAAGGCAGACGTTC
AGCGTGCTATTAAGGTCAAAGATGATGAGCTGGGGGAAATGGTAGCCATG
ATGGACGAGGAAGAGCTCCGTGCGCTGGCGGACTTCGGACCTACGGGAAA
GGAGGACATCAACCTCTGGAAACGAGATCGTCGAAAACGGTCATGGCGAC
GTCTTTCTGCCTTTGGGATGCTTCGAAATGACCCATCCCTTTACCGCCAA
TGGGCCCAGCAGCGATATCAACGCTTGGCATCACAAGCTGAGGTCACGAA
CACCGACCGTATGCTTGGGACTACCTGCGCTACCGATGCCGCCCGCCGGC
CACCTTGGTCGACGGACCTCCATTACTCGCACAGATGTCGCGCACAGCAA
CAGCAACCCGGAAAAAAGCAGCAGCAACAGCGACAGCAACGCGCCTCCAT
TGCAGACCTGCCCGTGTCTGACGAGAGCTCGAATGCTACAGTTCTGGGGC
GACTGTCTCGAAAATGTGTCCACACGGCCCCTTCCTCGAGACATCCGGCA
AGGGCGGTCGCGAAAAATCGACCGGTTTCGGCGCCTTCGGGGGCGGTAGA
AAGGATATCACCCCGGCCAGACCAACGTGAGACCACAAGGACCCCAAGTT
TGGCGAGACTTGCAAGGGTTTTCTACCAGTCGACCGTGGCGTCAACCGCT
TCTACGCTCGGGGAATGTTCGAGTCGGCAGCAGCCTTCAAGTATTGAGTA
CCTTTCAGGAGAAAAACCAGACCCCGCTGAAAGCGTGTGTTTCCAAGCTT
CCTCTCAGCCGGAAATATACAAAGGCGAGGCGAGCAAGGACGACAGCCAT
GCTGAAACAACGACTAGCGTAGTGCACGGAGAACGGAACGGTGACACAAT
TCGTTCATCAGAGCTGGACGGTGTTGAGAAGCGCATGGAGAGCGTGCGCT
TGCTGTGGGCGGTGTCACAGCTTTCGACCGACGCCGTAACCAAGAAAATT
ATGCATGGGTACTCAGAGCGACAGCGAGCCAGAGAGCCGAACAGGACAAA
GTGGAACACGCCGTCCCGTAGGCCTCAGCCACCAGCGGGTCCCCGTAACT
CCCAGGTCAACGCCCATAGAAAAGAACGAGGTTATAACGCGGGCAGGCGT
ATCGTTCGCTGA
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