mRNA_Ecto-sp13_S_contig609.16753.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig609.16753.1
Unique NamemRNA_Ecto-sp13_S_contig609.16753.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig609.16753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig609contigEcto-sp13_S_contig609:19923..20606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size684
Hectar predicted targeting categoryother localisation
Exons1
Cds size381
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463848.3057044-UTR-Ecto-sp13_S_contig609:19922..201171681463848.3057044-UTR-Ecto-sp13_S_contig609:19922..20117Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig609 19923..20117 +
1681463848.332954-UTR-Ecto-sp13_S_contig609:20498..206061681463848.332954-UTR-Ecto-sp13_S_contig609:20498..20606Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig609 20499..20606 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463848.3224201-CDS-Ecto-sp13_S_contig609:20117..204981681463848.3224201-CDS-Ecto-sp13_S_contig609:20117..20498Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig609 20118..20498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig609.16753.1prot_Ecto-sp13_S_contig609.16753.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig609 20118..20498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig609.16753.1

>prot_Ecto-sp13_S_contig609.16753.1 ID=prot_Ecto-sp13_S_contig609.16753.1|Name=mRNA_Ecto-sp13_S_contig609.16753.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp
MRPVGEVLCSKKSDKVSPTKRKLSSTQISRQDRRRGGCSNKVVCIADSRL
DNLFQRTHFRGAVNENARWHAHSVAAGCWRKILLLPSELVCKSGSIPYLA
RSSAVRTVTDSIAIFGGVKYWCEVLV*
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mRNA from alignment at Ecto-sp13_S_contig609:19923..20606+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig609.16753.1 ID=mRNA_Ecto-sp13_S_contig609.16753.1|Name=mRNA_Ecto-sp13_S_contig609.16753.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=684bp|location=Sequence derived from alignment at Ecto-sp13_S_contig609:19923..20606+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGCAGAACAGAAGAAAGAGACTCTACTCAAAGAGATAGTCGAGTTGGGC
TCTGGTTCTTGGCCGATGATAATGTGCAGTTGCATGTACGTACCACATGA
ATGATGCTATGTTTATGTATCTACGTACACCAGCAGCACTTTATAATAGT
CCTCCTTCGATAACCAAGGACACCTAGCAATCACACACGAGACACATGAG
ACCCGTCGGGGAAGTGCTGTGCAGCAAAAAATCCGATAAGGTCTCTCCAA
CCAAGAGAAAACTCTCCTCAACTCAAATTTCAAGACAAGACAGGCGACGC
GGTGGATGTTCAAATAAGGTCGTTTGTATTGCGGATTCTCGACTTGATAA
TCTATTTCAGCGAACACATTTTCGAGGAGCCGTAAATGAAAATGCGCGTT
GGCACGCCCATAGTGTTGCTGCTGGATGCTGGCGAAAGATTCTGCTGCTG
CCGTCGGAACTAGTCTGTAAATCTGGGTCCATACCGTACCTTGCACGATC
CTCTGCAGTACGCACCGTCACAGACTCCATAGCTATTTTTGGTGGTGTGA
AGTACTGGTGCGAAGTACTGGTGTAGACCACCAGTTCGGGGGATTGGGTC
TGTGAAGGTGTATACCGCAGCGGATCGTCAATGGTACGGCCACTCCGATT
CATTTGCGGACTTTTCGGACAGCAGCTGCAGCCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig609:19923..20606+

>mRNA_Ecto-sp13_S_contig609.16753.1 ID=mRNA_Ecto-sp13_S_contig609.16753.1|Name=mRNA_Ecto-sp13_S_contig609.16753.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig609:19923..20606+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGACCCGTCGGGGAAGTGCTGTGCAGCAAAAAATCCGATAAGGTCTC
TCCAACCAAGAGAAAACTCTCCTCAACTCAAATTTCAAGACAAGACAGGC
GACGCGGTGGATGTTCAAATAAGGTCGTTTGTATTGCGGATTCTCGACTT
GATAATCTATTTCAGCGAACACATTTTCGAGGAGCCGTAAATGAAAATGC
GCGTTGGCACGCCCATAGTGTTGCTGCTGGATGCTGGCGAAAGATTCTGC
TGCTGCCGTCGGAACTAGTCTGTAAATCTGGGTCCATACCGTACCTTGCA
CGATCCTCTGCAGTACGCACCGTCACAGACTCCATAGCTATTTTTGGTGG
TGTGAAGTACTGGTGCGAAGTACTGGTGTAG
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